Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

4289912 .. 4291390

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010779

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGACAGAAACCAGTTGCGACGCCAGGTTGCCCACATGAGAAGTTCTCTCATTGAGCAGCATTACTTGGATCAGCAGCAATTTGTCCAGCTGGAGGATTTGGAAGACGATAGTAACCCAAACTTTGTGGAGGAAATTGTGACATTGTTCTACAAAGACTCAACTAGACTCTTCCAAAAGATTGATCAAGCACTGCATAGTGTACCTATGGATTTTGCCAGGCTGGATGATTACATGCACCAGTTCAAGGGTAGTAGCTCAAGCATTGGAGCTATAAAGGTGAAGAATGAATGCACACAATTCAAAGAATTTTGTCTGGCAGGAAATGCTGAAGGATGCTTCAGGGCTTTCCAGAGAGTAAAACATGAGCATGAGGCATTGAAGAGGCAGCTTGAAACTTATTTCCAGTTGAGAAGACAAGCTGGAATGGCACAAAGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

148

Amino Acids

17.37

Weight (kDa)

6.59

Isoelectric Point (pI)

59.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 129	5.6e-11	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	2 cut(s)	325, 351
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	94, 247
AgsI	TTSAA	4 cut(s)	247, 304, 382, 395
AjnI	CCWGG	2 cut(s)	24, 218
AluBI	AGCT	5 cut(s)	91, 258, 272, 391, 422
AluI	AGCT	5 cut(s)	91, 258, 272, 391, 422
AlwI	GGATC	1 cut(s)	78
ApeKI	GCWGC	3 cut(s)	58, 76, 388
ApoI	RAATTY	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	111, 421
BbvI	GCAGC	3 cut(s)	70, 88, 400
BciT130I	CCWGG	2 cut(s)	26, 220
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	3 cut(s)	59, 77, 389
BlsI	GCNGC	3 cut(s)	60, 78, 390
Bme1390I	CCNGG	2 cut(s)	26, 220
BmrFI	CCNGG	2 cut(s)	26, 220
BmsI	GCATC	1 cut(s)	326
BpiI	GAAGAC	2 cut(s)	111, 421
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 247
Bse1I	ACTGG	3 cut(s)	13, 241, 406
BseBI	CCWGG	2 cut(s)	26, 220
BseGI	GGATG	2 cut(s)	232, 341
BseLI	CCNNNNNNNGG	2 cut(s)	94, 247
BseNI	ACTGG	3 cut(s)	13, 241, 406
BseXI	GCAGC	3 cut(s)	70, 88, 400
BslI	CCNNNNNNNGG	2 cut(s)	94, 247
BsmI	GAATGC	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	70, 184
BspPI	GGATC	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	13, 241, 406
BssMI	GATC	2 cut(s)	70, 184
BssNI	GRCGYC	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	26, 220
Bst6I	CTCTTC	2 cut(s)	176, 377
BstACI	GRCGYC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	232, 341
BstKTI	GATC	2 cut(s)	73, 187
BstMBI	GATC	2 cut(s)	70, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 428
BstNI	CCWGG	2 cut(s)	26, 220
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	24, 218
BstV1I	GCAGC	3 cut(s)	70, 88, 400
BstV2I	GAAGAC	2 cut(s)	111, 421
BtsCI	GGATG	2 cut(s)	232, 341
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	191
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	4 cut(s)	37, 235, 365, 371
CviJI	RGCY	7 cut(s)	91, 223, 258, 272, 347, 391, 422
CviKI_1	RGCY	7 cut(s)	91, 223, 258, 272, 347, 391, 422
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	2 cut(s)	72, 186
DpnII	GATC	2 cut(s)	70, 184
Eam1104I	CTCTTC	2 cut(s)	176, 377
EarI	CTCTTC	2 cut(s)	176, 377
Eco57I	CTGAAG	2 cut(s)	325, 351
EcoRII	CCWGG	2 cut(s)	24, 218
FaeI	CATG	4 cut(s)	40, 238, 368, 374
FaiI	YATR	7 cut(s)	38, 198, 209, 236, 275, 366, 372
FatI	CATG	4 cut(s)	36, 234, 364, 370
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	59, 77, 389
FokI	GGATG	2 cut(s)	239, 348
Fsp4HI	GCNGC	3 cut(s)	59, 77, 389
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	3 cut(s)	59, 77, 389
GsuI	CTGGAG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	40, 238, 368, 374
HinfI	GANTC	2 cut(s)	158, 168
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	352, 441
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	196, 238, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 428
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	40, 238, 368, 374
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	70, 184
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	3 cut(s)	70, 88, 400
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	113, 139
MalI	GATC	2 cut(s)	72, 186
MboI	GATC	2 cut(s)	70, 184
MboII	GAAGA	5 cut(s)	116, 163, 295, 394, 426
MluCI	AATT	4 cut(s)	80, 135, 299, 308
MlyI	GAGTC	2 cut(s)	152, 162
MnlI	CCTC	4 cut(s)	88, 124, 367, 378
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	26, 220
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	26, 220
MwoI	GCNNNNNNNGC	2 cut(s)	326, 428
NdeII	GATC	2 cut(s)	70, 184
NlaIII	CATG	4 cut(s)	40, 238, 368, 374
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	238
PctI	GAATGC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	60, 78, 390
PleI	GAGTC	2 cut(s)	152, 162
PpsI	GAGTC	2 cut(s)	152, 162
Psp6I	CCWGG	2 cut(s)	24, 218
PspGI	CCWGG	2 cut(s)	24, 218
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	369
SatI	GCNGC	3 cut(s)	59, 77, 389
Sau3AI	GATC	2 cut(s)	70, 184
SchI	GAGTC	2 cut(s)	152, 162
ScrFI	CCNGG	2 cut(s)	26, 220
SetI	ASST	9 cut(s)	30, 93, 208, 260, 274, 282, 393, 424, 440
SfaNI	GCATC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	4 cut(s)	80, 135, 299, 308
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	24, 218
TasI	AATT	4 cut(s)	80, 135, 299, 308
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	58, 76, 388
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.