Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

3227929 .. 3229423

Gene Structure 1495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAGACAACAACACCTTGAGAGCACAAATTTCCTCCTTGAGGCAATCTTTCTTCGATGAGGGAATGCTTGACGATCACTATGTCCAACTCGAAGAGTTGGAAGCGGAGGACAATCCTCACTTCTGTGAAGAAGTCATGACAATGTTTCTCAGGGACTGTACTAAATTGATTGCTACACTGGAGCGTTCTGTGCATGAACCAGAATTTGATCCCCAACAGATAGATCAGTATCTCCATCAGCTCAAGGGTAGCAGCTCCAGTGTTGGTGCTGCTAAGGTGTGGAGTGAAGTTAACATACTCAGAGAAATTCTGAAAGCAGACGGCGACTATGCAAGGTTTAGGGATCATTTGGCTCAACTCAAAGTTGAGCATCAAAAGTTGGAAGCTAACCTTGAACCTTACTTCCAGATGCTCAGGCAACTTGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

Hpt

Protein Analysis

145

Amino Acids

16.8

Weight (kDa)

4.73

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 129	2.5e-09	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	3 cut(s)	206, 354, 422
AcsI	RAATTY	3 cut(s)	30, 206, 309
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	398
AleI	CACNNNNGTG	1 cut(s)	126
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	3 cut(s)	244, 258, 389
AluI	AGCT	3 cut(s)	244, 258, 389
Alw21I	GWGCWC	1 cut(s)	28
AlwI	GGATC	3 cut(s)	206, 354, 422
AlwNI	CAGNNNCTG	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	255, 272
ApoI	RAATTY	3 cut(s)	30, 206, 309
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	259, 267
BccI	CCATC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	340
BisI	GCNGC	2 cut(s)	256, 273
BlsI	GCNGC	2 cut(s)	257, 274
BmsI	GCATC	2 cut(s)	382, 402
BpmI	CTGGAG	2 cut(s)	203, 244
Bpu10I	CCTNAGC	2 cut(s)	276, 416
BpuEI	CTTGAG	3 cut(s)	40, 61, 230
BsaBI	GATNNNNATC	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	186, 261
Bse8I	GATNNNNATC	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	166, 316, 430
BseNI	ACTGG	2 cut(s)	186, 261
BseXI	GCAGC	2 cut(s)	259, 267
BsiHKAI	GWGCWC	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	5 cut(s)	76, 211, 226, 346, 427
BspACI	CCGC	1 cut(s)	107
BspCNI	CTCAG	3 cut(s)	165, 315, 429
BspHI	TCATGA	1 cut(s)	138
BspPI	GGATC	3 cut(s)	206, 354, 422
BsrI	ACTGG	2 cut(s)	186, 261
BssMI	GATC	5 cut(s)	76, 211, 226, 346, 427
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	90
BstDEI	CTNAG	4 cut(s)	152, 276, 302, 416
BstENI	CCTNNNNNAGG	1 cut(s)	40
BstKTI	GATC	5 cut(s)	79, 214, 229, 349, 430
BstMBI	GATC	5 cut(s)	76, 211, 226, 346, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	259, 267
BtsIMutI	CAGTG	2 cut(s)	179, 268
CaiI	CAGNNNCTG	1 cut(s)	159
CciI	TCATGA	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	139, 197
CviJI	RGCY	4 cut(s)	244, 258, 356, 389
CviKI_1	RGCY	4 cut(s)	244, 258, 356, 389
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	4 cut(s)	152, 276, 302, 416
DpnI	GATC	5 cut(s)	78, 213, 228, 348, 429
DpnII	GATC	5 cut(s)	76, 211, 226, 346, 427
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	142, 200
FaiI	YATR	5 cut(s)	84, 140, 198, 299, 333
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	138, 196
Fnu4HI	GCNGC	2 cut(s)	256, 273
Fsp4HI	GCNGC	2 cut(s)	256, 273
GluI	GCNGC	2 cut(s)	256, 273
GsuI	CTGGAG	2 cut(s)	203, 244
Hin1II	CATG	2 cut(s)	142, 200
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HpaI	GTTAAC	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	305, 315
Hpy188III	TCNNGA	2 cut(s)	139, 409
Hpy8I	GTNNAC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	196, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	4 cut(s)	152, 276, 302, 416
Hsp92II	CATG	2 cut(s)	142, 200
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	76, 211, 226, 346, 427
LmnI	GCTCC	2 cut(s)	184, 263
LpnPI	CCDG	6 cut(s)	139, 167, 216, 274, 403, 422
Lsp1109I	GCAGC	2 cut(s)	259, 267
LweI	GCATC	2 cut(s)	382, 402
MalI	GATC	5 cut(s)	78, 213, 228, 348, 429
MboI	GATC	5 cut(s)	76, 211, 226, 346, 427
MboII	GAAGA	3 cut(s)	46, 107, 143
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	4 cut(s)	30, 167, 206, 309
MmeI	TCCRAC	3 cut(s)	81, 112, 363
MnlI	CCTC	5 cut(s)	36, 46, 55, 103, 129
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	2 cut(s)	126, 143
Mva1269I	GAATGC	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	5 cut(s)	76, 211, 226, 346, 427
NlaIII	CATG	2 cut(s)	142, 200
OliI	CACNNNNGTG	1 cut(s)	126
PagI	TCATGA	1 cut(s)	138
PctI	GAATGC	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	257, 274
PstNI	CAGNNNCTG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	2 cut(s)	126, 143
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	256, 273
Sau3AI	GATC	5 cut(s)	76, 211, 226, 346, 427
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	8 cut(s)	20, 246, 260, 282, 341, 391, 396, 403
SfaNI	GCATC	2 cut(s)	382, 402
SmiMI	CAYNNNNRTG	2 cut(s)	126, 143
SmlI	CTYRAG	3 cut(s)	19, 40, 245
SmoI	CTYRAG	3 cut(s)	19, 40, 245
Sse9I	AATT	4 cut(s)	30, 167, 206, 309
SsiI	CCGC	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	57, 93
TasI	AATT	4 cut(s)	30, 167, 206, 309
TatI	WGTACW	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	186, 268
TseI	GCWGC	2 cut(s)	255, 272
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	186, 268
XagI	CCTNNNNNAGG	1 cut(s)	40
XapI	RAATTY	3 cut(s)	30, 206, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.