Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

59757907 .. 59767896

Gene Structure 9990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG424100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAAAGAAACAATATTCGTAGGCAGGTTGCTCTGATGAGGCAGTCCCTCTTTACTCAGGGATATCTGGATGAACAGTTTGTTCAGTTGGAGGAGCTGCAAGATGATACTAATCCAAATTTTGTGGAGGAAATTGCTACATTGTACTACCGTGATTCATGCAGATCACTCCAAACCATAGAGAAGTCATTAGAGAAAACCCCTCACGATTTCAATAAGTTGGACAATCATATGCATCAATTCAAGGGAAGTAGCTCAAGTTTTGGAATTCAACCTGAGTTGGGTTTCATGACACAGGAAATGAGGGAAGTCATCATGCCTACGGTAATGCGCCCAAGGGTGGTCAAGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

117

Amino Acids

13.9

Weight (kDa)

5.91

Isoelectric Point (pI)

63.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 91	4.6e-06	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AciI	CCGC	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	118, 267
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	281, 340
AgsI	TTSAA	3 cut(s)	214, 244, 272
AluBI	AGCT	2 cut(s)	97, 255
AluI	AGCT	2 cut(s)	97, 255
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	2 cut(s)	118, 267
AspLEI	GCGC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 340
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	281, 340
BseMII	CTCAG	2 cut(s)	71, 267
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	281, 340
BsmFI	GGGAC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	349
BspCNI	CTCAG	2 cut(s)	70, 268
BspHI	TCATGA	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	3 cut(s)	78, 152, 325
BstDEI	CTNAG	2 cut(s)	57, 276
BstF5I	GGATG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	16
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	3 cut(s)	159, 289, 316
CviJI	RGCY	2 cut(s)	97, 255
CviKI_1	RGCY	2 cut(s)	97, 255
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	57, 276
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	335
Eco32I	GATATC	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	3 cut(s)	162, 292, 319
FaiI	YATR	6 cut(s)	160, 179, 231, 233, 290, 317
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	158, 288, 315
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	98
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	162, 292, 319
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	3 cut(s)	68, 206, 289
HpyCH4III	ACNGT	3 cut(s)	78, 152, 325
HpyCH4V	TGCA	3 cut(s)	100, 162, 235
HpyF3I	CTNAG	2 cut(s)	57, 276
Hsp92II	CATG	3 cut(s)	162, 292, 319
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	11, 44, 53, 281, 288
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	1 cut(s)	244
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MluCI	AATT	4 cut(s)	118, 132, 239, 267
MmeI	TCCRAC	2 cut(s)	69, 201
MnlI	CCTC	6 cut(s)	33, 59, 85, 121, 213, 297
Mph1103I	ATGCAT	1 cut(s)	237
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	162, 292, 319
NsiI	ATGCAT	1 cut(s)	237
PagI	TCATGA	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	164
SetI	ASST	4 cut(s)	30, 99, 257, 277
SfaNI	GCATC	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	4 cut(s)	118, 132, 239, 267
SsiI	CCGC	1 cut(s)	349
SspI	AATATT	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	3 cut(s)	78, 152, 325
TasI	AATT	4 cut(s)	118, 132, 239, 267
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	3 cut(s)	87, 147, 277
XapI	RAATTY	2 cut(s)	118, 267
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.