MD12G1046900.v1.1

protein histidine kinase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0001440
Physical Location & Seq
Reverse (-)
5381422 .. 5381628
207 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1046900.v1.1.491

Sequence Viewer

Length: 207 bp
ATGCGTTTTCACCACCAAAAAACAGCGGTTAATGATTATGATCACCTAGAGCAGGCACTACAGAGGAACCCTTGTGATTTTAATAAGTTGGACAACTATATGCAGCAGTTCAAGGGAAGTAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCTGACTGCCAACAGTTTAGGGAATATTGTAATGCAGGAAACGCAGAAGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007231 GO:0007234 GO:0007346 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009893 GO:0009927 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010389 GO:0010562 GO:0010564 GO:0010604 GO:0010646 GO:0010647 GO:0010948 GO:0010972 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032870 GO:0032872 GO:0032874 GO:0033554 GO:0034599 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043410 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0045930 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051716 GO:0051726 GO:0060089 GO:0060255 GO:0065007 GO:0070302 GO:0070304 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071470 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0140096 GO:1901564 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902531 GO:1902533 GO:1902749 GO:1902750
KEGG Pathways
Metabolic & Signaling
ko02020 ko04011 ko04075 map02020 map04011 map04075
Pfam Domains
Protein Families
Hpt

Protein Analysis

69

Amino Acids

7.89

Weight (kDa)

6.81

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hpt PF01627 11 - 66 1e-07 Hpt domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 2 cut(s) 123, 152
AluI AGCT 2 cut(s) 123, 152
ApeKI GCWGC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 35, 157
BbvI GCAGC 1 cut(s) 115
BclI TGATCA 1 cut(s) 40
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmiI GGNNCC 2 cut(s) 68, 136
BmsI GCATC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 52
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 68, 136
BssMI GATC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 54
BstENI CCTNNNNNAGG 1 cut(s) 50
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 54
CviJI RGCY 3 cut(s) 123, 137, 152
CviKI_1 RGCY 3 cut(s) 123, 137, 152
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EcoNI CCTNNNNNAGG 1 cut(s) 50
FaiI YATR 3 cut(s) 39, 99, 101
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 104
HphI GGTGA 2 cut(s) 35, 157
Hpy188I TCNGA 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 103, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 2 cut(s) 38, 171
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 138
MaeI CTAG 1 cut(s) 47
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 1 cut(s) 57
MseI TTAA 2 cut(s) 30, 81
MspA1I CMGCKG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 68, 136
PkrI GCNGC 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 68, 136
SaqAI TTAA 2 cut(s) 30, 81
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 40
SetI ASST 4 cut(s) 48, 125, 147, 154
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 59
SgeI CNNG 6 cut(s) 59, 65, 84, 124, 138, 198
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SsiI CCGC 1 cut(s) 26
SspI AATATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 165
Tru1I TTAA 2 cut(s) 30, 81
Tru9I TTAA 2 cut(s) 30, 81
TseI GCWGC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 50
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.