Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Forward (+)

19100676 .. 19104844

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGAAGTGGTTTCTGCTTATGCTCATCATCTGCAATGCTGTTCCTTTACAAGGACTCACCAAAATTGTCTCTGCGAGACCCCAAGTTGTGAACATCGGTTCGGTTTTCACATTTAATTCTCTCATTGGTAAAGTCATCAAAGTTGCTATGGATGCTGCTGTTGAAGACGTCAATGCTAGCCCCAGCATTCTTAACACCACTACACTTAGGATCATCATGCATGACACCAAATACAATGGATTCATGAGCATCATGGAACCTCTGCAGTTCATGGAATCTGAGACAGTGGCCATAATTGGCCCTCAGAGATCTACGACCGCCCGTGTAGTAGCTCATGTTGCAACAGAACTAAAAATTCCTATACTATCCTTCTCTGCCACAGACCCTACTATGTCTCCTCTGCAGTTCCCTTTCTTCATCAGAACTTCACAAAATGATCTCTTTCAGATGGCCGCCATAGCAGATATTGTTCAATTCTATGGTTGGAGAGAGGTGGTAGCAATATACGGCGATGATGATTATGGCCGAAATGGGGTAGCTGCCTTGGGAGACAGGTTATCAGAGAAGCGCTGCAGAATCTCATACAAAGCAGCTTTGCCCCCCGCACCTACCAGAGAGAATATCACCGATTTGCTGATTAAGGTAGCTTTGAGTGAGTCAAGGATTATCGTCGTTCACGCTTCTTTCATCTGGGGCCTAGAGTTGTTCAATGTGGCTCGGAATCTTGGTATGATGAGCACTGGTTATGTGTGGATTGCTACCAACTGGCTTTCTACAATTATAGACACAGACTCTCCTCTCCCATTGGACACCATAAATAACATTCAAGGGGTCATTACACTGCGCCTGCACACTCCCAACTCTATCATGAAGCAGAACTTCGTTCAAAGGTGGCATAACTTAACTCATGTTGGACTTAGCACTTATGCACTGTATGCTTATGACACTGTCTGGCTGCTTGCTCAGGCGATTGATGATTTCTTCAAAAAAGGTGGAAACGTTTCCTTTTCGAAGAATCCGATTATATCTGAGCTTGGGGGTGGAAACTTGCACCTTGATGCTCTGAAAGTCTTTGATGGAGGAAAGATATTTCTTGAGAGCATCTTACAGGTTGATAGAATTGGCTTAACCGGTAGGATGAAGTTTACTAGTGACAGAAACCTTGTAAATCCAGCATTTGATGTGCTTAATGTCATTGGCACTGGTTACACGACTATTGGTTACTGGTTTAATCATTCAGGCTTGTCTGTGATGCCGGCTGACGAGATGGAGAACACATCTTTTTCGGGACAGAAGCTTCATAGTGTTGTCTGGCCAGGACATTCAATAAAAATACCACGTGGCTGGGTGTTCTCGAACAATGGAAGGCATTTGAGGATTGGAGTTCCAAATCGTTACAGGTTCGAAGAGGTAGTCTCAGTTAAAAGCAATGGGATGATCACTGGCTTCTGTGTGGATGTCTTCATTGCCGCTATTAACTTATTACCTTACGCAGTCCCATTTGAGCTTGTAGCTTTTGGGAATGGTCATGACAACCCAAGTAACTCTGAGCTTGTGCGCTTGATAACGACTGGGGTCTATGATGCAGGTGTTGGTGATATCACCATCATAACAGAGAGAACCAAAATGGCAGATTTTACTCAGCCGTATGTGGAGTCAGGGCTAGTGGTGGTGGCTCCTGTTCGGAAGTTGGGCTCCAGTGCTATGGCGTTCTTGAGGCCGTTCACACCCCAGATGTGGCTTATTGCAGCTGCGTCTTTCCTCATAGTCGGTGCTGTCATTTGGTGTCTTGAGCACAAACACAATGACGAGTTTCGAGGCCCTCCTCGTAGACAAGTGATCACTACTTTCTGGTTTAGCTTTTCAACTCTTTTCTTCTCTCATAGAGAGACTACCACCAGCAACCTAGGAAGAATAGTGCTGATAATATGGCTATTCGTAGTTCTCATAATTAACTCTAGTTATACCGCAAGCCTCACGTCAATCCTCACAGTTCATCAGCTGTCTTCACCAATTAAAGGCATAGAAACTTTGCAAACAAACCATGATCCTATTGGGTATCCACAAGGCTCCTTTGTCAGAGACTATCTGATCCACGAACTCAATATCCATGTGTCAAGACTTGTCCCTCTCCGGTCTCCAGAGGAATATGATAAGGCCTTGAGAGATGGTCCTGGGAAAGGTGGTGTTGCGGCTGTTGTTGATGAACGTGCTTACATAGAGCTTTTCCTCTCAAACAGATGTGAGTTCGGCATAGTTGGTCAAGAGTTCACGAAAAACGGATGGGGATTTGCATTTCCGCGTAACTCGCCATTGGCTGTGGACGTCTCCGCTGCAATTTTGCAGCTATCAGAAAATGGAGATATGCAGAGAATTCGGGACAAATGGTTGCTTAGAAAAGCTTGCTCTCTGCAAGGCGCAGAGATAGAAGTGGATAGGCTGGAGCTTAAGAGCTTTTGGGGATTATTTGTGGTGTGTGGAGTGGCATGTGTTCTTGCTCTTGCAGTGTATACAGTGTTGATGATACGTCAGTTTGGACAGCAATGCCCTGAAGAAGCAGAAGGGTCGATCAGGAGAAGAAGCTCACCATCCGCGCGTATCCACTCCTTTCTCTCCTTTGTAAAAGAGAAAGAAGAAGACGCCAAGGCTAGGTCCTCTAGGGAAAGGCAGCTTGAAGATATCTCTGCAAATGGTTCAAGTCGCTGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009606 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009628 GO:0009629 GO:0009630 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

903

Amino Acids

100.53

Weight (kDa)

7.64

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	41 - 325	2e-13	Periplasmic binding protein
ANF_receptor	PF01094	47 - 400	3.4e-95	Receptor family ligand binding region
SBP_bac_3	PF00497	473 - 797	1.8e-09	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	473 - 559	2.6e-07	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	578 - 830	3.8e-37	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1577
AatII	GACGTC	2 cut(s)	171, 2328
Acc36I	ACCTGC	1 cut(s)	1577
AccI	GTMKAC	2 cut(s)	1831, 2510
AccII	CGCG	3 cut(s)	2302, 2594, 2596
AciI	CCGC	9 cut(s)	318, 453, 603, 1470, 1968, 2192, 2300, 2331, 2592
AclI	AACGTT	1 cut(s)	999
AclWI	GGATC	3 cut(s)	218, 2042, 2086
AcoI	YGGCCR	4 cut(s)	288, 450, 523, 1313
AcsI	RAATTY	2 cut(s)	354, 2373
AcuI	CTGAAG	1 cut(s)	2571
AcvI	CACGTG	1 cut(s)	1340
AcyI	GRCGYC	3 cut(s)	168, 2325, 2640
AfeI	AGCGCT	1 cut(s)	569
AfiI	CCNNNNNNNGG	6 cut(s)	50, 532, 1737, 2018, 2180, 2649
AflII	CTTAAG	1 cut(s)	2447
AgeI	ACCGGT	1 cut(s)	1130
AhlI	ACTAGT	1 cut(s)	1148
AjiI	CACGTC	1 cut(s)	1980
AjnI	CCWGG	2 cut(s)	1315, 2173
AloI	GAACNNNNNNTCC	2 cut(s)	2091, 2123
Alw21I	GWGCWC	2 cut(s)	740, 1797
AlwI	GGATC	3 cut(s)	218, 2042, 2086
Aor51HI	AGCGCT	1 cut(s)	569
AoxI	GGCC	9 cut(s)	288, 298, 450, 523, 694, 1313, 1718, 1819, 2157
ApoI	RAATTY	2 cut(s)	354, 2373
ArsI	GACNNNNNNTTYG	2 cut(s)	1398, 1430
AsiGI	ACCGGT	1 cut(s)	1130
Asp700I	GAANNNNTTC	1 cut(s)	1000
AspA2I	CCTAGG	1 cut(s)	1906
AspLEI	GCGC	5 cut(s)	570, 846, 1560, 2420, 2596
AspS9I	GGNCC	5 cut(s)	299, 694, 1820, 2171, 2652
AsuHPI	GGTGA	6 cut(s)	49, 616, 1594, 1607, 2001, 2577
AsuII	TTCGAA	2 cut(s)	1010, 1404
AsuNHI	GCTAGC	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	2171, 2652
AvrII	CCTAGG	1 cut(s)	1906
BaeI	ACNNNNGTAYC	2 cut(s)	2516, 2549
BalI	TGGCCA	2 cut(s)	290, 1315
BanII	GRGCYC	1 cut(s)	1697
BbrPI	CACGTG	1 cut(s)	1340
BbsI	GAAGAC	4 cut(s)	171, 1453, 1998, 2643
Bbv12I	GWGCWC	2 cut(s)	740, 1797
BccI	CCATC	7 cut(s)	442, 1070, 1261, 1613, 2162, 2277, 2596
BceAI	ACGGC	3 cut(s)	523, 1630, 1705
BcgI	CGANNNNNNTGC	4 cut(s)	2357, 2391, 2547, 2581
BciT130I	CCWGG	2 cut(s)	1317, 2175
BciVI	GTATCC	2 cut(s)	2070, 2609
BclI	TGATCA	2 cut(s)	1437, 1839
BcuI	ACTAGT	1 cut(s)	1148
BfaI	CTAG	8 cut(s)	177, 698, 1149, 1664, 1907, 1959, 2649, 2658
BfmI	CTRYAG	3 cut(s)	263, 401, 571
BfoI	RGCGCY	1 cut(s)	571
BfrI	CTTAAG	1 cut(s)	2447
BfuAI	ACCTGC	1 cut(s)	1577
BfuI	GTATCC	2 cut(s)	2070, 2609
BglII	AGATCT	1 cut(s)	308
BlnI	CCTAGG	1 cut(s)	1906
Bme1390I	CCNGG	2 cut(s)	1317, 2175
Bme18I	GGWCC	2 cut(s)	2171, 2652
BmgBI	CACGTC	1 cut(s)	1980
BmgT120I	GGNCC	5 cut(s)	299, 694, 1820, 2171, 2652
BmiI	GGNNCC	5 cut(s)	258, 695, 1677, 1696, 2071
BmrFI	CCNGG	2 cut(s)	1317, 2175
BmrI	ACTGGG	1 cut(s)	1581
BmsI	GCATC	6 cut(s)	142, 258, 1048, 1110, 1242, 1573
BmtI	GCTAGC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	1581
BoxI	GACNNNNGTC	1 cut(s)	1574
BpiI	GAAGAC	4 cut(s)	171, 1453, 1998, 2643
BplI	GAGNNNNNCTC	2 cut(s)	1400, 1432
BpmI	CTGGAG	3 cut(s)	1681, 2124, 2462
Bpu10I	CCTNAGC	1 cut(s)	963
Bpu14I	TTCGAA	2 cut(s)	1010, 1404
BpuEI	CTTGAG	4 cut(s)	1115, 1735, 1811, 2182
BsaAI	YACGTR	1 cut(s)	1340
BsaHI	GRCGYC	3 cut(s)	168, 2325, 2640
BsaI	GGTCTC	2 cut(s)	70, 2142
BsaJI	CCNNGG	4 cut(s)	543, 1906, 2174, 2643
BsaWI	WCCGGW	2 cut(s)	1130, 2133
BsaXI	ACNNNNNCTCC	4 cut(s)	379, 409, 778, 808
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 532, 1737, 2018, 2180, 2649
Bse118I	RCCGGY	2 cut(s)	1130, 1255
Bse1I	ACTGG	7 cut(s)	745, 770, 1207, 1229, 1447, 1576, 1698
Bse3DI	GCAATG	4 cut(s)	40, 1435, 1464, 2549
BseBI	CCWGG	2 cut(s)	1317, 2175
BseDI	CCNNGG	4 cut(s)	543, 1906, 2174, 2643
BseGI	GGATG	6 cut(s)	157, 1143, 1440, 1462, 2288, 2588
BseLI	CCNNNNNNNGG	6 cut(s)	50, 532, 1737, 2018, 2180, 2649
BseMI	GCAATG	4 cut(s)	40, 1435, 1464, 2549
BseMII	CTCAG	7 cut(s)	270, 317, 977, 1020, 1431, 1539, 1655
BseNI	ACTGG	7 cut(s)	745, 770, 1207, 1229, 1447, 1576, 1698
BseRI	GAGGAG	3 cut(s)	387, 786, 1815
BseYI	CCCAGC	2 cut(s)	182, 1344
BsgI	GTGCAG	1 cut(s)	833
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	9 cut(s)	290, 300, 452, 525, 696, 1315, 1720, 1821, 2159
BshTI	ACCGGT	1 cut(s)	1130
BsiEI	CGRYCG	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	740, 1797
BsiSI	CCGG	3 cut(s)	1131, 1256, 2134
BslFI	GGGAC	4 cut(s)	1302, 1481, 2111, 2393
BslI	CCNNNNNNNGG	6 cut(s)	50, 532, 1737, 2018, 2180, 2649
BsmBI	CGTCTC	1 cut(s)	2332
BsmFI	GGGAC	4 cut(s)	1302, 1481, 2111, 2393
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	9 cut(s)	290, 300, 452, 525, 696, 1315, 1720, 1821, 2159
Bso31I	GGTCTC	2 cut(s)	70, 2142
Bsp119I	TTCGAA	2 cut(s)	1010, 1404
Bsp1286I	GDGCHC	3 cut(s)	740, 1697, 1797
Bsp143I	GATC	8 cut(s)	210, 308, 436, 1437, 1839, 2047, 2091, 2568
BspACI	CCGC	9 cut(s)	318, 453, 603, 1470, 1968, 2192, 2300, 2331, 2592
BspANI	GGCC	9 cut(s)	290, 300, 452, 525, 696, 1315, 1720, 1821, 2159
BspCNI	CTCAG	7 cut(s)	271, 316, 976, 1021, 1430, 1540, 1654
BspFNI	CGCG	3 cut(s)	2302, 2594, 2596
BspHI	TCATGA	3 cut(s)	243, 867, 1528
BspLI	GGNNCC	5 cut(s)	258, 695, 1677, 1696, 2071
BspMAI	CTGCAG	3 cut(s)	267, 405, 575
BspMI	ACCTGC	1 cut(s)	1577
BspOI	GCTAGC	1 cut(s)	180
BspPI	GGATC	3 cut(s)	218, 2042, 2086
BspT104I	TTCGAA	2 cut(s)	1010, 1404
BspTI	CTTAAG	1 cut(s)	2447
BspTNI	GGTCTC	2 cut(s)	70, 2142
BsrDI	GCAATG	4 cut(s)	40, 1435, 1464, 2549
BsrFI	RCCGGY	2 cut(s)	1130, 1255
BsrI	ACTGG	7 cut(s)	745, 770, 1207, 1229, 1447, 1576, 1698
BssAI	RCCGGY	2 cut(s)	1130, 1255
BssECI	CCNNGG	4 cut(s)	543, 1906, 2174, 2643
BssMI	GATC	8 cut(s)	210, 308, 436, 1437, 1839, 2047, 2091, 2568
BssNAI	GTATAC	1 cut(s)	2511
BssNI	GRCGYC	3 cut(s)	168, 2325, 2640
BssT1I	CCWWGG	3 cut(s)	543, 1906, 2643
Bst1107I	GTATAC	1 cut(s)	2511
Bst2UI	CCWGG	2 cut(s)	1317, 2175
Bst4CI	ACNGT	5 cut(s)	286, 933, 949, 1993, 2515
Bst6I	CTCTTC	1 cut(s)	1401
BstACI	GRCGYC	3 cut(s)	168, 2325, 2640
BstAFI	CTTAAG	1 cut(s)	2447
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstBAI	YACGTR	1 cut(s)	1340
BstBI	TTCGAA	2 cut(s)	1010, 1404
BstC8I	GCNNGC	6 cut(s)	178, 848, 960, 1257, 1972, 2404
BstENI	CCTNNNNNAGG	2 cut(s)	48, 2178
BstF5I	GGATG	6 cut(s)	157, 1143, 1440, 1462, 2288, 2588
BstFNI	CGCG	3 cut(s)	2302, 2594, 2596
BstH2I	RGCGCY	1 cut(s)	571
BstHHI	GCGC	5 cut(s)	570, 846, 1560, 2420, 2596
BstKTI	GATC	8 cut(s)	213, 311, 439, 1440, 1842, 2050, 2094, 2571
BstMBI	GATC	8 cut(s)	210, 308, 436, 1437, 1839, 2047, 2091, 2568
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 338, 458, 935, 2308
BstNI	CCWGG	2 cut(s)	1317, 2175
BstNSI	RCATGY	1 cut(s)	2490
BstPAI	GACNNNNGTC	1 cut(s)	1574
BstSCI	CCNGG	2 cut(s)	1315, 2173
BstSFI	CTRYAG	3 cut(s)	263, 401, 571
BstUI	CGCG	3 cut(s)	2302, 2594, 2596
BstV2I	GAAGAC	4 cut(s)	171, 1453, 1998, 2643
BstX2I	RGATCY	1 cut(s)	308
BstXI	CCANNNNNNTGG	2 cut(s)	1344, 1705
BstYI	RGATCY	1 cut(s)	308
BstZ17I	GTATAC	1 cut(s)	2511
BsuI	GTATCC	2 cut(s)	2070, 2609
BsuRI	GGCC	9 cut(s)	290, 300, 452, 525, 696, 1315, 1720, 1821, 2159
BtgZI	GCGATG	1 cut(s)	525
BtrI	CACGTC	1 cut(s)	1980
BtsCI	GGATG	6 cut(s)	157, 1143, 1440, 1462, 2288, 2588
BtsI	GCAGTG	2 cut(s)	839, 2511
BveI	ACCTGC	1 cut(s)	1577
Cac8I	GCNNGC	6 cut(s)	178, 848, 960, 1257, 1972, 2404
CciI	TCATGA	3 cut(s)	243, 867, 1528
CfoI	GCGC	5 cut(s)	570, 846, 1560, 2420, 2596
Cfr10I	RCCGGY	2 cut(s)	1130, 1255
Cfr13I	GGNCC	5 cut(s)	299, 694, 1820, 2171, 2652
CseI	GACGC	2 cut(s)	1743, 2648
CspAI	ACCGGT	1 cut(s)	1130
CspCI	CAANNNNNGTGG	2 cut(s)	973, 1008
DdeI	CTNAG	5 cut(s)	206, 279, 303, 917, 963
DpnI	GATC	8 cut(s)	212, 310, 438, 1439, 1841, 2049, 2093, 2570
DpnII	GATC	8 cut(s)	210, 308, 436, 1437, 1839, 2047, 2091, 2568
EaeI	YGGCCR	4 cut(s)	288, 450, 523, 1313
Eam1104I	CTCTTC	1 cut(s)	1401
EarI	CTCTTC	1 cut(s)	1401
Eco130I	CCWWGG	3 cut(s)	543, 1906, 2643
Eco147I	AGGCCT	1 cut(s)	2159
Eco24I	GRGCYC	1 cut(s)	1697
Eco31I	GGTCTC	2 cut(s)	70, 2142
Eco32I	GATATC	2 cut(s)	1600, 2680
Eco47I	GGWCC	2 cut(s)	2171, 2652
Eco47III	AGCGCT	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	2571
Eco72I	CACGTG	1 cut(s)	1340
EcoNI	CCTNNNNNAGG	2 cut(s)	48, 2178
EcoO109I	RGGNCCY	3 cut(s)	694, 1820, 2652
EcoRI	GAATTC	1 cut(s)	2373
EcoRII	CCWGG	2 cut(s)	1315, 2173
EcoRV	GATATC	2 cut(s)	1600, 2680
EcoT14I	CCWWGG	3 cut(s)	543, 1906, 2643
EcoT22I	ATGCAT	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	1697
ErhI	CCWWGG	3 cut(s)	543, 1906, 2643
Esp3I	CGTCTC	1 cut(s)	2332
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FaqI	GGGAC	4 cut(s)	1302, 1481, 2111, 2393
FauI	CCCGC	1 cut(s)	610
FbaI	TGATCA	2 cut(s)	1437, 1839
FblI	GTMKAC	2 cut(s)	1831, 2510
FokI	GGATG	6 cut(s)	164, 1150, 1447, 1469, 2295, 2575
FriOI	GRGCYC	1 cut(s)	1697
FspBI	CTAG	8 cut(s)	177, 698, 1149, 1664, 1907, 1959, 2649, 2658
GlaI	GCGC	5 cut(s)	569, 845, 1559, 2419, 2595
GsaI	CCCAGC	2 cut(s)	186, 1348
GsuI	CTGGAG	3 cut(s)	1681, 2124, 2462
HaeII	RGCGCY	1 cut(s)	571
HaeIII	GGCC	9 cut(s)	290, 300, 452, 525, 696, 1315, 1720, 1821, 2159
HapII	CCGG	3 cut(s)	1131, 1256, 2134
HgaI	GACGC	2 cut(s)	1743, 2648
HhaI	GCGC	5 cut(s)	570, 846, 1560, 2420, 2596
Hin1I	GRCGYC	3 cut(s)	168, 2325, 2640
Hin6I	GCGC	5 cut(s)	568, 844, 1558, 2418, 2594
HinP1I	GCGC	5 cut(s)	568, 844, 1558, 2418, 2594
HindIII	AAGCTT	2 cut(s)	1295, 2400
HinfI	GANTC	9 cut(s)	54, 240, 275, 576, 656, 721, 791, 1015, 1655
HpaII	CCGG	3 cut(s)	1131, 1256, 2134
HphI	GGTGA	6 cut(s)	49, 616, 1594, 1607, 2001, 2577
Hpy166II	GTNNAC	8 cut(s)	91, 676, 1146, 1725, 1832, 2271, 2323, 2511
Hpy8I	GTNNAC	8 cut(s)	91, 676, 1146, 1725, 1832, 2271, 2323, 2511
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	3 cut(s)	379, 1359, 2555
HpyCH4III	ACNGT	5 cut(s)	286, 933, 949, 1993, 2515
HpyCH4IV	ACGT	7 cut(s)	168, 999, 1339, 1979, 2209, 2325, 2527
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 338, 458, 935, 2308
HpySE526I	ACGT	7 cut(s)	168, 999, 1339, 1979, 2209, 2325, 2527
Hsp92I	GRCGYC	3 cut(s)	168, 2325, 2640
HspAI	GCGC	5 cut(s)	568, 844, 1558, 2418, 2594
KroI	GCCGGC	1 cut(s)	1255
KroNI	GCCGGC	1 cut(s)	1257
Ksp22I	TGATCA	2 cut(s)	1437, 1839
Kzo9I	GATC	8 cut(s)	210, 308, 436, 1437, 1839, 2047, 2091, 2568
LmnI	GCTCC	4 cut(s)	1681, 1700, 2075, 2443
LweI	GCATC	6 cut(s)	142, 258, 1048, 1110, 1242, 1573
MaeI	CTAG	8 cut(s)	177, 698, 1149, 1664, 1907, 1959, 2649, 2658
MaeII	ACGT	7 cut(s)	168, 999, 1339, 1979, 2209, 2325, 2527
MaeIII	GTNAC	6 cut(s)	1151, 1205, 1220, 1394, 1541, 2303
MalI	GATC	8 cut(s)	212, 310, 438, 1439, 1841, 2049, 2093, 2570
MboI	GATC	8 cut(s)	210, 308, 436, 1437, 1839, 2047, 2091, 2568
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	3 cut(s)	740, 1697, 1797
MlsI	TGGCCA	2 cut(s)	290, 1315
MluNI	TGGCCA	2 cut(s)	290, 1315
MlyI	GAGTC	4 cut(s)	48, 665, 785, 1664
MmeI	TCCRAC	2 cut(s)	464, 892
Mox20I	TGGCCA	2 cut(s)	290, 1315
Mph1103I	ATGCAT	1 cut(s)	222
MroNI	GCCGGC	1 cut(s)	1255
MroXI	GAANNNNTTC	1 cut(s)	1000
MscI	TGGCCA	2 cut(s)	290, 1315
MslI	CAYNNNNRTG	1 cut(s)	1056
Msp20I	TGGCCA	2 cut(s)	290, 1315
MspA1I	CMGCKG	3 cut(s)	1751, 2002, 2333
MspCI	CTTAAG	1 cut(s)	2447
MspI	CCGG	3 cut(s)	1131, 1256, 2134
MspR9I	CCNGG	2 cut(s)	1317, 2175
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	2 cut(s)	1317, 2175
MvnI	CGCG	3 cut(s)	2302, 2594, 2596
MwoI	GCNNNNNNNGC	5 cut(s)	152, 338, 458, 935, 2308
NaeI	GCCGGC	1 cut(s)	1257
NdeII	GATC	8 cut(s)	210, 308, 436, 1437, 1839, 2047, 2091, 2568
NgoMIV	GCCGGC	1 cut(s)	1255
NheI	GCTAGC	1 cut(s)	176
NlaIV	GGNNCC	5 cut(s)	258, 695, 1677, 1696, 2071
NmuCI	GTSAC	1 cut(s)	1151
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	1 cut(s)	2490
NspV	TTCGAA	2 cut(s)	1010, 1404
PagI	TCATGA	3 cut(s)	243, 867, 1528
PaqCI	CACCTGC	1 cut(s)	1577
PceI	AGGCCT	1 cut(s)	2159
PcsI	WCGNNNNNNNCGW	1 cut(s)	1016
PctI	GAATGC	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	1257
PdmI	GAANNNNTTC	1 cut(s)	1000
PfeI	GAWTC	5 cut(s)	240, 275, 576, 721, 1015
PflFI	GACNNNGTC	1 cut(s)	947
PinAI	ACCGGT	1 cut(s)	1130
PleI	GAGTC	4 cut(s)	48, 664, 785, 1663
PmaCI	CACGTG	1 cut(s)	1340
PmlI	CACGTG	1 cut(s)	1340
PpsI	GAGTC	4 cut(s)	48, 664, 785, 1663
Ppu21I	YACGTR	1 cut(s)	1340
PpuMI	RGGWCCY	1 cut(s)	2652
PshAI	GACNNNNGTC	1 cut(s)	1574
Psp1406I	AACGTT	1 cut(s)	999
Psp5II	RGGWCCY	1 cut(s)	2652
Psp6I	CCWGG	2 cut(s)	1315, 2173
PspCI	CACGTG	1 cut(s)	1340
PspFI	CCCAGC	2 cut(s)	182, 1344
PspGI	CCWGG	2 cut(s)	1315, 2173
PspN4I	GGNNCC	5 cut(s)	258, 695, 1677, 1696, 2071
PspPI	GGNCC	5 cut(s)	299, 694, 1820, 2171, 2652
PspPPI	RGGWCCY	1 cut(s)	2652
PstI	CTGCAG	3 cut(s)	267, 405, 575
PsuI	RGATCY	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	947
PvuII	CAGCTG	2 cut(s)	1751, 2002
RseI	CAYNNNNRTG	1 cut(s)	1056
Sau3AI	GATC	8 cut(s)	210, 308, 436, 1437, 1839, 2047, 2091, 2568
Sau96I	GGNCC	5 cut(s)	299, 694, 1820, 2171, 2652
SchI	GAGTC	4 cut(s)	48, 665, 785, 1664
ScrFI	CCNGG	2 cut(s)	1317, 2175
SduI	GDGCHC	3 cut(s)	740, 1697, 1797
SfaNI	GCATC	6 cut(s)	142, 258, 1048, 1110, 1242, 1573
SfcI	CTRYAG	3 cut(s)	263, 401, 571
SfuI	TTCGAA	2 cut(s)	1010, 1404
SinI	GGWCC	2 cut(s)	2171, 2652
SmiMI	CAYNNNNRTG	1 cut(s)	1056
SmlI	CTYRAG	5 cut(s)	1094, 1714, 1790, 2161, 2447
SmoI	CTYRAG	5 cut(s)	1094, 1714, 1790, 2161, 2447
SpeI	ACTAGT	1 cut(s)	1148
SseBI	AGGCCT	1 cut(s)	2159
SsiI	CCGC	9 cut(s)	318, 453, 603, 1470, 1968, 2192, 2300, 2331, 2592
SspMI	CTAG	8 cut(s)	177, 698, 1149, 1664, 1907, 1959, 2649, 2658
StuI	AGGCCT	1 cut(s)	2159
StyD4I	CCNGG	2 cut(s)	1315, 2173
StyI	CCWWGG	3 cut(s)	543, 1906, 2643
TaaI	ACNGT	5 cut(s)	286, 933, 949, 1993, 2515
TaiI	ACGT	7 cut(s)	171, 1002, 1342, 1982, 2212, 2328, 2530
TaqI	TCGA	5 cut(s)	1010, 1355, 1404, 1816, 2567
TauI	GCSGC	3 cut(s)	455, 1472, 2195
TfiI	GAWTC	5 cut(s)	240, 275, 576, 721, 1015
TseFI	GTSAC	1 cut(s)	1151
Tsp45I	GTSAC	1 cut(s)	1151
TspGWI	ACGGA	1 cut(s)	2295
Tth111I	GACNNNGTC	1 cut(s)	947
Vha464I	CTTAAG	1 cut(s)	2447
VpaK11BI	GGWCC	2 cut(s)	2171, 2652
XagI	CCTNNNNNAGG	2 cut(s)	48, 2178
XapI	RAATTY	2 cut(s)	354, 2373
XceI	RCATGY	1 cut(s)	2490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2051
XmaJI	CCTAGG	1 cut(s)	1906
XmiI	GTMKAC	2 cut(s)	1831, 2510
XmnI	GAANNNNTTC	1 cut(s)	1000
XspI	CTAG	8 cut(s)	177, 698, 1149, 1664, 1907, 1959, 2649, 2658
ZraI	GACGTC	2 cut(s)	169, 2326
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.