Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

43001677 .. 43003538

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGAGCTCTTCCTCTCTAGTCGATGTGGATATAGTATTGTTGGTCATGAGTTCACTAAAATGGGTTGGGGATTTGCCTTTTCGAGGGACTCCCCATTGGCAATCGACATGTCGACCGCCATATTGAAGCTATCGGAGAACGGAAACCTCCAACAGATCCATGACAAGTGGCTAATGAAAAGTGCTTGCGGTGCGAAGGAGCGAAGCAAGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

71

Amino Acids

8.01

Weight (kDa)

9.14

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	3 cut(s)	117, 189, 211
AclWI	GGATC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	2 cut(s)	7, 130
AluI	AGCT	2 cut(s)	7, 130
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	3 cut(s)	117, 189, 211
BspHI	TCATGA	1 cut(s)	46
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	14
BssMI	GATC	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	187, 209
BstENI	CCTNNNNNAGG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 208
BstNSI	RCATGY	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	187, 209
CciI	TCATGA	1 cut(s)	46
CviAII	CATG	3 cut(s)	47, 109, 161
CviJI	RGCY	3 cut(s)	7, 130, 172
CviKI_1	RGCY	3 cut(s)	7, 130, 172
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	3 cut(s)	50, 112, 164
FaiI	YATR	5 cut(s)	33, 48, 110, 122, 162
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	3 cut(s)	46, 108, 160
FblI	GTMKAC	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	18
Hin1II	CATG	3 cut(s)	50, 112, 164
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	54, 114
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	54, 114
HpyAV	CCTTC	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 208
Hsp92II	CATG	3 cut(s)	50, 112, 164
Kzo9I	GATC	1 cut(s)	156
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	4, 199
MaeI	CTAG	1 cut(s)	18
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	23, 78, 158
MslI	CAYNNNNRTG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	191, 208
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	3 cut(s)	50, 112, 164
NspI	RCATGY	1 cut(s)	112
PagI	TCATGA	1 cut(s)	46
PciI	ACATGT	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PscI	ACATGT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	112
SapI	GCTCTTC	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	3 cut(s)	9, 132, 150
SgeI	CNNG	7 cut(s)	30, 59, 96, 121, 173, 178, 198
SmiMI	CAYNNNNRTG	1 cut(s)	59
SsiI	CCGC	3 cut(s)	117, 189, 211
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	9
TaqI	TCGA	4 cut(s)	22, 83, 105, 113
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	156
XagI	CCTNNNNNAGG	1 cut(s)	82
XceI	RCATGY	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.