Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

8616227 .. 8620019

Gene Structure 3793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G008580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2763 bp

ATGAATATAGCCTTGCTTCTGCTTTTTTTGGTTTTCTGTAAGGGTTCTCATACTAGTGGACTAAATACTAATGTCACTACAAGACCTGATATACTGAACATTGGTTCGATGTTCACTTTCGATTCTGTCATTGGGAAAATTGCAAAACTTGCCATAACACTTGCGGTTGAAGATGTCAATTCCAATCCCAACATTCTCAAGGGCACAAAGCTCTCACTCAAAATGCATGACACCAAATCGAGTGACTTCCTCGGAATCGTTGAAGCTTTGCAGTTTATGGAGAATGACACAGTGGCCATAATTGGCCCCCAATTCTCAGCTACAGCTCATGTTATCTCACACATAGCAAATGAGCTCCAAGTGCCTTTGTTATCTTTCGCAGCAACAGACCCTACTCTATCTCCTGTTCAGTTCCCTTTCTTTGTTCGAACAACACGAAGCGATCTCTTTCAGATGACAGCAGTGGTAGACCTTGTTGTTCACTACGAGTGGAGAGATGTCATAGCAATATATGTAGATGACGATTTTGGAAGAAATGCTATTGCTTCCTTGGGTGATAAGCTAGCCGAAAAGCGCTGCAAGATTTCATACAAAGTGCCTTTGACTCCCACAGCAACAAAAGATGAGATCAGAAAGGCACTGATCAGTGTGTCTACAATGGAGTCTAGGATTCTGATCCTGCACATTTATACTAGTTGGGGTCTGCAAGTACTTGAAGAAGCGCAGGAGCAGAAGATGATGGATAGTGGATATGTGTGGATTGCTACTGATTGGTTCTCCACCATTTTAGATACAGATCCTTCTCTCCCTCTAGTGCAAACAAACAACATCCAAGGCGTTCTCACATTGCGAATGTACACACCCGATTCACAACTCAAGACGGAATTCAAGTCGAGATGGAGCAACTTGACTAAGGCAAGAAGATTACTTAATAACACTTCTTTTGGTTTAAATACATATGGCCTATACGCGTATGATTCGGTGTTGCTTCTTGCTCAAGCAATTGAATCATTTTTCGCTAATGGGTGGAACATTTCCTTTTCAAATGACACAAATTTGAGGGAGTTAAGTGGTGGGAAGTTGAATCTTGATGCTTTGAACATTTTCAATGGAGGCAGGCAATTGCTCAAAAGCATTTTAGAGGTTAACACAACTGGCTTGACAGGACCGATTAAGTTTGATGCTGATGGGAACTTACTCAATCCTGCATTTGAAGTCATCAATGTGATTGGCACAGGGACTAGAACTATTGGCTATTGGTCGAACTCCTCGGGCTTAAATGTTCTTCCTCCAGAAAAGCTCCAAATGAAGATGCAGACTAATGGCTCCAGCCCCGGTGCTCAAAATCTGTACAGTGTGATCTGGCCTGGACAAACAACTGAGAAGCCTCGCGGATGGGTTTTCCCTTACAATGGCAGAAAGCTCAAGATTGGAGTCCCTCGTCGAGTCAGCTACCGTGAGTTTGTGGGTATACAAGGCACTGATTTCACTGGTTACTGCATTGAGGTCTTTCAAGCTGCACTAAATGAGTTACCATATGGGGTACCATACAAGTATGTCCCTTTTGGAGATGGTATCAAAAACCCAGGAAACAATGACCTTCTGCACAGAATCCAAATTGGGGAGTTTGATGGTGTAGTAGGAGATATTACAATCACTACTAACAGAACAAAGATGGTGGATTTTACTCAACCTTATATTGAGTCTGGGCTAGTTGTGGTTGCTCCAATAAGGAAGATGAACTCAAGTGCTTGGGCTTTTCTGAGACCCTTTACTCCAATGATGTGGGGTGTTACTGGTGTTTTCTTCCTAGTTGTGGGAGCAGTTATTTGGATTTTGGAGCGCAGGACTAATGAGGATTTTAGGGGGCATCCAAGAAGACAATTTGTGACAATTGTTTGGTTTAGCTTTTCAACTTTGTTCTTCTCCCAGAAAGAGAAAACTGGCAGCACACTTGGTCGCTTTGTGCTGATCATATGGCTATTTGTGGTACTAATACTCAACTCCAGCTACACTGCAAGCTTGACTTCGATCCTCACAGTGGAGCAACTTTCGTCACCTGTGAAAGGGATTGAAAGTTTAGCAACAGGCACTGAGCCCATTGGTTATCTAAGGGGTTCCTTTGCTGAAGCTTACTTAACCGACGAGCTGAACATACATCATAACCGACTCTTTCCCCTTAACTCACCGGAAGAGTATGAGAAGGCCTTGAAGAAAGGTCCTAGTGCAGGTGGTGTTGCTGCAGTGATTGATGAGCGTGCTTACATGGAGCTCTTCCTCTCTAGTCGATGTGGATATAGTATTGTTGGTCAAGAGTTCACTAAAATGGGTTGGGGATTTGCCTTTCCAAGGGACTCGCCGTTGGCAATCGACATGTCGACCGCCATATTGAAGCTATCGGAGAACGGAAACCTGCAAAAGATTCATGACAAGTGGCTAATGAAAAGTGCTTGCAGTGCAGAAGGAGCAAAGCAAGCAGTAGACCGCCTTCAGCTAAAGAGCTTTTGGGGCCTCTTTCTACTAAGCGGCATTGCTTGCTTTCTTGCTCTTCTTCTTCATGTTCTTCGCATGGTTCAACAGTACTACCGGCATGCAGATTCCGACATCGAGAGCTCGCAATATACAGGACGACTGAAGTCGTTTGTTTCGTTTGTAAATAAGAGGGAACAAGAAGTGAAAAGCAGTTCCAAGAGTAAAGCCTCAAATAAGATAGCGCATGATCAAGAATGCAGTAGCGATGGTTTCGATGAAAGTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

920

Amino Acids

102.53

Weight (kDa)

7.22

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	45 - 337	1.4e-14	Periplasmic binding protein
ANF_receptor	PF01094	49 - 411	1.2e-92	Receptor family ligand binding region
SBP_bac_3	PF00497	492 - 814	8.9e-12	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	494 - 575	1.3e-07	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	595 - 846	3.3e-35	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2219
Acc36I	ACCTGC	2 cut(s)	2219, 2421
Acc65I	GGTACC	1 cut(s)	1543
AccB1I	GGYRCC	1 cut(s)	1543
AccI	GTMKAC	5 cut(s)	468, 653, 1471, 2378, 2481
AccII	CGCG	2 cut(s)	971, 1392
AciI	CCGC	5 cut(s)	164, 1392, 2382, 2485, 2526
AclWI	GGATC	3 cut(s)	670, 791, 2026
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	884, 1054
AcuI	CTGAAG	3 cut(s)	2148, 2474, 2654
AfaI	GTAC	6 cut(s)	711, 857, 1352, 1545, 1992, 2582
AfeI	AGCGCT	1 cut(s)	575
AfiI	CCNNNNNNNGG	7 cut(s)	1412, 1621, 1816, 2041, 2066, 2228, 2349
AflIII	ACRYGT	2 cut(s)	969, 2373
AhlI	ACTAGT	2 cut(s)	53, 692
AjnI	CCWGG	2 cut(s)	1366, 1585
Alw21I	GWGCWC	4 cut(s)	357, 1342, 2274, 2615
Alw26I	GTCTC	1 cut(s)	1759
AlwI	GGATC	3 cut(s)	670, 791, 2026
AlwNI	CAGNNNCTG	1 cut(s)	2093
Ama87I	CYCGRG	1 cut(s)	1270
Aor51HI	AGCGCT	1 cut(s)	575
AoxI	GGCC	6 cut(s)	294, 304, 961, 1364, 2205, 2509
ApeKI	GCWGC	5 cut(s)	380, 576, 1517, 1947, 2240
ApoI	RAATTY	2 cut(s)	884, 1054
Asp700I	GAANNNNTTC	1 cut(s)	1103
Asp718I	GGTACC	1 cut(s)	1543
AspLEI	GCGC	4 cut(s)	576, 724, 1845, 2716
AspS9I	GGNCC	4 cut(s)	305, 1166, 2219, 2509
AsuC2I	CCSGG	1 cut(s)	1335
AsuHPI	GGTGA	3 cut(s)	566, 2049, 2178
AsuII	TTCGAA	1 cut(s)	427
AsuNHI	GCTAGC	1 cut(s)	562
AvaI	CYCGRG	1 cut(s)	1270
AvaII	GGWCC	2 cut(s)	1166, 2219
BaeGI	GKGCMC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	1543
BanII	GRGCYC	4 cut(s)	357, 2100, 2274, 2615
BarI	GAAGNNNNNNTAC	2 cut(s)	2472, 2504
BbsI	GAAGAC	1 cut(s)	1885
Bbv12I	GWGCWC	4 cut(s)	357, 1342, 2274, 2615
BbvI	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
BccI	CCATC	8 cut(s)	733, 891, 1181, 1389, 1565, 1625, 1669, 2732
BceAI	ACGGC	1 cut(s)	2344
BciT130I	CCWGG	2 cut(s)	1368, 1587
BclI	TGATCA	3 cut(s)	642, 1971, 2719
BcnI	CCSGG	1 cut(s)	1335
BcoDI	GTCTC	1 cut(s)	1759
BcuI	ACTAGT	2 cut(s)	53, 692
BfmI	CTRYAG	2 cut(s)	321, 2241
BfoI	RGCGCY	1 cut(s)	577
BfuAI	ACCTGC	2 cut(s)	2219, 2421
BisI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
BlsI	GCNGC	6 cut(s)	382, 578, 1519, 1949, 2242, 2528
BmcAI	AGTACT	2 cut(s)	711, 2582
Bme1390I	CCNGG	3 cut(s)	1335, 1368, 1587
Bme18I	GGWCC	2 cut(s)	1166, 2219
BmeT110I	CYCGRG	1 cut(s)	1270
BmgT120I	GGNCC	4 cut(s)	305, 1166, 2219, 2509
BmiI	GGNNCC	5 cut(s)	307, 1327, 1545, 2119, 2510
BmrFI	CCNGG	3 cut(s)	1335, 1368, 1587
BmsI	GCATC	4 cut(s)	1081, 1171, 1302, 1879
BmtI	GCTAGC	1 cut(s)	566
BoxI	GACNNNNGTC	1 cut(s)	2635
BpiI	GAAGAC	1 cut(s)	1885
BpmI	CTGGAG	3 cut(s)	1275, 1312, 1990
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	5 cut(s)	182, 860, 981, 1409, 1729
BpuMI	CCSGG	1 cut(s)	1335
BsaBI	GATNNNNATC	2 cut(s)	674, 795
BsaI	GGTCTC	1 cut(s)	1759
BsaJI	CCNNGG	7 cut(s)	250, 549, 832, 1269, 1333, 1585, 2348
BsaWI	WCCGGW	1 cut(s)	2188
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	7 cut(s)	1412, 1621, 1816, 2041, 2066, 2228, 2349
Bse118I	RCCGGY	1 cut(s)	2586
Bse1I	ACTGG	4 cut(s)	1159, 1495, 1801, 1948
Bse3DI	GCAATG	2 cut(s)	845, 2529
Bse8I	GATNNNNATC	2 cut(s)	674, 795
BseBI	CCWGG	2 cut(s)	1368, 1587
BseDI	CCNNGG	7 cut(s)	250, 549, 832, 1269, 1333, 1585, 2348
BseGI	GGATG	3 cut(s)	828, 1400, 1870
BseJI	GATNNNNATC	2 cut(s)	674, 795
BseLI	CCNNNNNNNGG	7 cut(s)	1412, 1621, 1816, 2041, 2066, 2228, 2349
BseMI	GCAATG	2 cut(s)	845, 2529
BseMII	CTCAG	4 cut(s)	330, 1371, 1754, 2085
BseNI	ACTGG	4 cut(s)	1159, 1495, 1801, 1948
BseRI	GAGGAG	1 cut(s)	1258
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
BsgI	GTGCAG	5 cut(s)	665, 1503, 1589, 2247, 2478
Bsh1236I	CGCG	2 cut(s)	971, 1392
Bsh1285I	CGRYCG	1 cut(s)	2382
BshFI	GGCC	6 cut(s)	296, 306, 963, 1366, 2207, 2511
BshNI	GGYRCC	1 cut(s)	1543
BsiEI	CGRYCG	1 cut(s)	2382
BsiHKAI	GWGCWC	4 cut(s)	357, 1342, 2274, 2615
BsiHKCI	CYCGRG	1 cut(s)	1270
BsiSI	CCGG	3 cut(s)	1335, 2189, 2587
BslFI	GGGAC	4 cut(s)	1252, 1421, 1544, 2366
BslI	CCNNNNNNNGG	7 cut(s)	1412, 1621, 1816, 2041, 2066, 2228, 2349
BsmAI	GTCTC	1 cut(s)	1759
BsmFI	GGGAC	4 cut(s)	1252, 1421, 1544, 2366
BsmI	GAATGC	1 cut(s)	2732
BsnI	GGCC	6 cut(s)	296, 306, 963, 1366, 2207, 2511
Bso31I	GGTCTC	1 cut(s)	1759
BsoBI	CYCGRG	1 cut(s)	1270
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	6 cut(s)	206, 357, 1342, 2100, 2274, 2615
Bsp1407I	TGTACA	2 cut(s)	855, 1350
Bsp143I	GATC	9 cut(s)	442, 627, 642, 675, 796, 1359, 1971, 2031, 2719
BspACI	CCGC	5 cut(s)	164, 1392, 2382, 2485, 2526
BspANI	GGCC	6 cut(s)	296, 306, 963, 1366, 2207, 2511
BspCNI	CTCAG	4 cut(s)	329, 1372, 1755, 2086
BspFNI	CGCG	2 cut(s)	971, 1392
BspHI	TCATGA	1 cut(s)	2425
BspLI	GGNNCC	5 cut(s)	307, 1327, 1545, 2119, 2510
BspMAI	CTGCAG	1 cut(s)	2245
BspMI	ACCTGC	2 cut(s)	2219, 2421
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	3 cut(s)	670, 791, 2026
BspQI	GCTCTTC	2 cut(s)	2279, 2553
BspT104I	TTCGAA	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	1543
BspTNI	GGTCTC	1 cut(s)	1759
BsrDI	GCAATG	2 cut(s)	845, 2529
BsrFI	RCCGGY	1 cut(s)	2586
BsrGI	TGTACA	2 cut(s)	855, 1350
BsrI	ACTGG	4 cut(s)	1159, 1495, 1801, 1948
BssAI	RCCGGY	1 cut(s)	2586
BssECI	CCNNGG	7 cut(s)	250, 549, 832, 1269, 1333, 1585, 2348
BssMI	GATC	9 cut(s)	442, 627, 642, 675, 796, 1359, 1971, 2031, 2719
BssNAI	GTATAC	1 cut(s)	1472
BssT1I	CCWWGG	3 cut(s)	549, 832, 2348
Bst1107I	GTATAC	1 cut(s)	1472
Bst2UI	CCWGG	2 cut(s)	1368, 1587
Bst4CI	ACNGT	5 cut(s)	292, 1355, 1457, 2041, 2580
Bst6I	CTCTTC	3 cut(s)	2187, 2279, 2553
BstAPI	GCANNNNNTGC	2 cut(s)	149, 2535
BstAUI	TGTACA	2 cut(s)	855, 1350
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	9 cut(s)	564, 1118, 2020, 2259, 2452, 2475, 2536, 2592, 2615
BstDEI	CTNAG	7 cut(s)	316, 912, 1380, 1763, 2094, 2111, 2522
BstENI	CCTNNNNNAGG	3 cut(s)	2064, 2226, 2347
BstF5I	GGATG	3 cut(s)	828, 1400, 1870
BstFNI	CGCG	2 cut(s)	971, 1392
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	4 cut(s)	576, 724, 1845, 2716
BstKTI	GATC	9 cut(s)	445, 630, 645, 678, 799, 1362, 1974, 2034, 2722
BstMAI	GTCTC	1 cut(s)	1759
BstMBI	GATC	9 cut(s)	442, 627, 642, 675, 796, 1359, 1971, 2031, 2719
BstMCI	CGRYCG	1 cut(s)	2382
BstMWI	GCNNNNNNNGC	7 cut(s)	149, 361, 2456, 2465, 2474, 2508, 2535
BstNI	CCWGG	2 cut(s)	1368, 1587
BstNSI	RCATGY	2 cut(s)	2377, 2594
BstPAI	GACNNNNGTC	1 cut(s)	2635
BstSCI	CCNGG	3 cut(s)	1333, 1366, 1585
BstSFI	CTRYAG	2 cut(s)	321, 2241
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	2 cut(s)	971, 1392
BstV1I	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
BstV2I	GAAGAC	1 cut(s)	1885
BstX2I	RGATCY	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	1785
BstYI	RGATCY	1 cut(s)	796
BstZ17I	GTATAC	1 cut(s)	1472
BsuRI	GGCC	6 cut(s)	296, 306, 963, 1366, 2207, 2511
BtgZI	GCGATG	1 cut(s)	2751
BtsCI	GGATG	3 cut(s)	828, 1400, 1870
BtsI	GCAGTG	4 cut(s)	468, 2013, 2250, 2461
BveI	ACCTGC	2 cut(s)	2219, 2421
Cac8I	GCNNGC	9 cut(s)	564, 1118, 2020, 2259, 2452, 2475, 2536, 2592, 2615
CaiI	CAGNNNCTG	1 cut(s)	2093
CciI	TCATGA	1 cut(s)	2425
CfoI	GCGC	4 cut(s)	576, 724, 1845, 2716
Cfr10I	RCCGGY	1 cut(s)	2586
Cfr13I	GGNCC	4 cut(s)	305, 1166, 2219, 2509
Csp6I	GTAC	6 cut(s)	710, 856, 1351, 1544, 1991, 2581
CspCI	CAANNNNNGTGG	2 cut(s)	1659, 1694
CviAII	CATG	9 cut(s)	227, 329, 2266, 2374, 2426, 2558, 2569, 2591, 2717
CviQI	GTAC	6 cut(s)	710, 856, 1351, 1544, 1991, 2581
DdeI	CTNAG	7 cut(s)	316, 912, 1380, 1763, 2094, 2111, 2522
DpnI	GATC	9 cut(s)	444, 629, 644, 677, 798, 1361, 1973, 2033, 2721
DpnII	GATC	9 cut(s)	442, 627, 642, 675, 796, 1359, 1971, 2031, 2719
DraI	TTTAAA	1 cut(s)	951
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	3 cut(s)	2187, 2279, 2553
EarI	CTCTTC	3 cut(s)	2187, 2279, 2553
Ecl136II	GAGCTC	3 cut(s)	355, 2272, 2613
Eco130I	CCWWGG	3 cut(s)	549, 832, 2348
Eco147I	AGGCCT	1 cut(s)	2207
Eco24I	GRGCYC	4 cut(s)	357, 2100, 2274, 2615
Eco31I	GGTCTC	1 cut(s)	1759
Eco47I	GGWCC	2 cut(s)	1166, 2219
Eco47III	AGCGCT	1 cut(s)	575
Eco53kI	GAGCTC	3 cut(s)	355, 2272, 2613
Eco57I	CTGAAG	3 cut(s)	2148, 2474, 2654
Eco88I	CYCGRG	1 cut(s)	1270
EcoICRI	GAGCTC	3 cut(s)	355, 2272, 2613
EcoNI	CCTNNNNNAGG	3 cut(s)	2064, 2226, 2347
EcoO109I	RGGNCCY	2 cut(s)	2219, 2509
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	1366, 1585
EcoT14I	CCWWGG	3 cut(s)	549, 832, 2348
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	4 cut(s)	357, 2100, 2274, 2615
ErhI	CCWWGG	3 cut(s)	549, 832, 2348
FaeI	CATG	9 cut(s)	230, 332, 2269, 2377, 2429, 2561, 2572, 2594, 2720
FalI	AAGNNNNNCTT	3 cut(s)	2011, 2043, 2743
FaqI	GGGAC	4 cut(s)	1252, 1421, 1544, 2366
FatI	CATG	9 cut(s)	226, 328, 2265, 2373, 2425, 2557, 2568, 2590, 2716
FauNDI	CATATG	3 cut(s)	958, 1537, 1976
FbaI	TGATCA	3 cut(s)	642, 1971, 2719
FblI	GTMKAC	5 cut(s)	468, 653, 1471, 2378, 2481
Fnu4HI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
FokI	GGATG	3 cut(s)	815, 1407, 1857
FriOI	GRGCYC	4 cut(s)	357, 2100, 2274, 2615
Fsp4HI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
GlaI	GCGC	4 cut(s)	575, 723, 1844, 2715
GluI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
GsuI	CTGGAG	3 cut(s)	1275, 1312, 1990
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	6 cut(s)	296, 306, 963, 1366, 2207, 2511
HapII	CCGG	3 cut(s)	1335, 2189, 2587
HhaI	GCGC	4 cut(s)	576, 724, 1845, 2716
Hin1II	CATG	9 cut(s)	230, 332, 2269, 2377, 2429, 2561, 2572, 2594, 2720
Hin6I	GCGC	4 cut(s)	574, 722, 1843, 2714
HinP1I	GCGC	4 cut(s)	574, 722, 1843, 2714
HincII	GTYRAC	2 cut(s)	1147, 2379
HindII	GTYRAC	2 cut(s)	1147, 2379
HindIII	AAGCTT	4 cut(s)	264, 2020, 2130, 2757
HpaI	GTTAAC	1 cut(s)	1147
HpaII	CCGG	3 cut(s)	1335, 2189, 2587
HphI	GGTGA	3 cut(s)	566, 2049, 2178
Hpy188I	TCNGA	7 cut(s)	254, 453, 632, 675, 1764, 2401, 2602
Hpy188III	TCNNGA	9 cut(s)	877, 894, 1088, 1292, 1426, 2312, 2426, 2608, 2723
Hpy99I	CGWCG	2 cut(s)	1446, 2147
HpyAV	CCTTC	5 cut(s)	810, 1610, 2197, 2456, 2498
HpyCH4III	ACNGT	5 cut(s)	292, 1355, 1457, 2041, 2580
HpyF10VI	GCNNNNNNNGC	7 cut(s)	149, 361, 2456, 2465, 2474, 2508, 2535
HpyF3I	CTNAG	7 cut(s)	316, 912, 1380, 1763, 2094, 2111, 2522
Hsp92II	CATG	9 cut(s)	230, 332, 2269, 2377, 2429, 2561, 2572, 2594, 2720
HspAI	GCGC	4 cut(s)	574, 722, 1843, 2714
KpnI	GGTACC	1 cut(s)	1547
Ksp22I	TGATCA	3 cut(s)	642, 1971, 2719
KspAI	GTTAAC	1 cut(s)	1147
Kzo9I	GATC	9 cut(s)	442, 627, 642, 675, 796, 1359, 1971, 2031, 2719
LguI	GCTCTTC	2 cut(s)	2279, 2553
Lsp1109I	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
LweI	GCATC	4 cut(s)	1081, 1171, 1302, 1879
MaeIII	GTNAC	7 cut(s)	73, 242, 1493, 1530, 1792, 1888, 2055
MalI	GATC	9 cut(s)	444, 629, 644, 677, 798, 1361, 1973, 2033, 2721
MboI	GATC	9 cut(s)	442, 627, 642, 675, 796, 1359, 1971, 2031, 2719
MfeI	CAATTG	3 cut(s)	1002, 1121, 1893
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	6 cut(s)	206, 357, 1342, 2100, 2274, 2615
MlsI	TGGCCA	1 cut(s)	296
MluI	ACGCGT	1 cut(s)	969
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	7 cut(s)	598, 671, 1443, 1455, 1712, 2163, 2348
MmeI	TCCRAC	1 cut(s)	2625
Mox20I	TGGCCA	1 cut(s)	296
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	1103
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	8 cut(s)	930, 950, 1067, 1146, 1173, 1277, 2138, 2181
MslI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	3 cut(s)	1335, 2189, 2587
MspR9I	CCNGG	3 cut(s)	1335, 1368, 1587
MunI	CAATTG	3 cut(s)	1002, 1121, 1893
Mva1269I	GAATGC	1 cut(s)	2732
MvaI	CCWGG	2 cut(s)	1368, 1587
MvnI	CGCG	2 cut(s)	971, 1392
MwoI	GCNNNNNNNGC	7 cut(s)	149, 361, 2456, 2465, 2474, 2508, 2535
NciI	CCSGG	1 cut(s)	1335
NdeI	CATATG	3 cut(s)	958, 1537, 1976
NdeII	GATC	9 cut(s)	442, 627, 642, 675, 796, 1359, 1971, 2031, 2719
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	9 cut(s)	230, 332, 2269, 2377, 2429, 2561, 2572, 2594, 2720
NlaIV	GGNNCC	5 cut(s)	307, 1327, 1545, 2119, 2510
NmuCI	GTSAC	4 cut(s)	73, 242, 1888, 2055
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	2 cut(s)	2377, 2594
NspV	TTCGAA	1 cut(s)	427
PaeI	GCATGC	1 cut(s)	2594
PagI	TCATGA	1 cut(s)	2425
PaqCI	CACCTGC	1 cut(s)	2219
PceI	AGGCCT	1 cut(s)	2207
PciI	ACATGT	1 cut(s)	2373
PciSI	GCTCTTC	2 cut(s)	2279, 2553
PcsI	WCGNNNNNNNCGW	2 cut(s)	433, 2645
PctI	GAATGC	1 cut(s)	2732
PdmI	GAANNNNTTC	1 cut(s)	1103
PkrI	GCNGC	6 cut(s)	382, 578, 1519, 1949, 2242, 2528
PleI	GAGTC	7 cut(s)	598, 670, 1442, 1454, 1711, 2163, 2348
PpsI	GAGTC	7 cut(s)	598, 670, 1442, 1454, 1711, 2163, 2348
PpuMI	RGGWCCY	1 cut(s)	2219
PscI	ACATGT	1 cut(s)	2373
PshAI	GACNNNNGTC	1 cut(s)	2635
Psp124BI	GAGCTC	3 cut(s)	357, 2274, 2615
Psp5II	RGGWCCY	1 cut(s)	2219
Psp6I	CCWGG	2 cut(s)	1366, 1585
PspGI	CCWGG	2 cut(s)	1366, 1585
PspN4I	GGNNCC	5 cut(s)	307, 1327, 1545, 2119, 2510
PspPI	GGNCC	4 cut(s)	305, 1166, 2219, 2509
PspPPI	RGGWCCY	1 cut(s)	2219
PstI	CTGCAG	1 cut(s)	2245
PstNI	CAGNNNCTG	1 cut(s)	2093
PsuI	RGATCY	1 cut(s)	796
RsaI	GTAC	6 cut(s)	711, 857, 1352, 1545, 1992, 2582
RsaNI	GTAC	6 cut(s)	710, 856, 1351, 1544, 1991, 2581
RseI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
SacI	GAGCTC	3 cut(s)	357, 2274, 2615
SalI	GTCGAC	1 cut(s)	2377
SapI	GCTCTTC	2 cut(s)	2279, 2553
SaqAI	TTAA	8 cut(s)	930, 950, 1067, 1146, 1173, 1277, 2138, 2181
SatI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
Sau3AI	GATC	9 cut(s)	442, 627, 642, 675, 796, 1359, 1971, 2031, 2719
Sau96I	GGNCC	4 cut(s)	305, 1166, 2219, 2509
ScaI	AGTACT	2 cut(s)	711, 2582
SchI	GAGTC	7 cut(s)	598, 671, 1443, 1455, 1712, 2163, 2348
ScrFI	CCNGG	3 cut(s)	1335, 1368, 1587
SduI	GDGCHC	6 cut(s)	206, 357, 1342, 2100, 2274, 2615
SfaNI	GCATC	4 cut(s)	1081, 1171, 1302, 1879
SfcI	CTRYAG	2 cut(s)	321, 2241
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	2 cut(s)	1166, 2219
SmiMI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
SmlI	CTYRAG	5 cut(s)	197, 875, 996, 1424, 1744
SmoI	CTYRAG	5 cut(s)	197, 875, 996, 1424, 1744
SpeI	ACTAGT	2 cut(s)	53, 692
SphI	GCATGC	1 cut(s)	2594
SseBI	AGGCCT	1 cut(s)	2207
SsiI	CCGC	5 cut(s)	164, 1392, 2382, 2485, 2526
SstI	GAGCTC	3 cut(s)	357, 2274, 2615
StuI	AGGCCT	1 cut(s)	2207
StyD4I	CCNGG	3 cut(s)	1333, 1366, 1585
StyI	CCWWGG	3 cut(s)	549, 832, 2348
TaaI	ACNGT	5 cut(s)	292, 1355, 1457, 2041, 2580
TaqII	GACCGA	1 cut(s)	1183
TatI	WGTACW	4 cut(s)	709, 855, 1350, 2580
TauI	GCSGC	1 cut(s)	2529
Tru1I	TTAA	8 cut(s)	930, 950, 1067, 1146, 1173, 1277, 2138, 2181
Tru9I	TTAA	8 cut(s)	930, 950, 1067, 1146, 1173, 1277, 2138, 2181
TseFI	GTSAC	4 cut(s)	73, 242, 1888, 2055
TseI	GCWGC	5 cut(s)	380, 576, 1517, 1947, 2240
Tsp45I	GTSAC	4 cut(s)	73, 242, 1888, 2055
TspDTI	ATGAA	8 cut(s)	17, 576, 1322, 1754, 2414, 2456, 2546, 2763
TspGWI	ACGGA	2 cut(s)	896, 2421
VpaK11BI	GGWCC	2 cut(s)	1166, 2219
XagI	CCTNNNNNAGG	3 cut(s)	2064, 2226, 2347
XapI	RAATTY	2 cut(s)	884, 1054
XceI	RCATGY	2 cut(s)	2377, 2594
XmiI	GTMKAC	5 cut(s)	468, 653, 1471, 2378, 2481
XmnI	GAANNNNTTC	1 cut(s)	1103
ZrmI	AGTACT	2 cut(s)	711, 2582
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.