Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Forward (+)

82929048 .. 82929780

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACGGCGGTGGTAGACCTTGTTGTTCACTACGAGTGGAGAGATGTCATAGCAATATATGTAGATGATGATTTTGGAAGAAATGCTATTGCTTCCTTGGGTGATAAGCTAGCCGAAAAGCGCTGCAAGATTTCTTACAAAGTGCCTTTGACTCCCACACAACAAAAGATGAGATCGAAAGGCACCGATCGTGCAAACAAACAACATCCAAGGCGTTCTCACATTGCGAATGTACACACCGATTCACAACTAAAGACCGAGTTCAAGTCGAGATGGAGCAACTTGACTAGGGCAAGAAGATTACTTAATAACACTTCTTTTGGGTTAAATACATATGGCCTATACGCATATGATTCGGTGTTGCTTCTTGCTCATGCAATTGAATCATTTTTCGCTAATGGGTGGAATATTTCCTTTTCAAATGACACAAATTTGAGGGAGTTAAGTGGTGGGAAGTTGAATCTTGATGCTTTGAACATTTTCAATGGAGGCAGGCAATTACTCAAAAGCATTTTAGAGGTTAACACAACCGGCTTAACGGGCCAATTAAGTTTGATGCGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

188

Amino Acids

21.26

Weight (kDa)

9.75

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 85	1.7e-11	Receptor family ligand binding region
ANF_receptor	PF01094	96 - 185	5.4e-10	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	2 cut(s)	8, 559
AcsI	RAATTY	1 cut(s)	430
AfaI	GTAC	1 cut(s)	234
AfeI	AGCGCT	1 cut(s)	122
AgsI	TTSAA	6 cut(s)	265, 383, 420, 460, 475, 484
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	2 cut(s)	337, 541
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	113
AsuNHI	GCTAGC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	21
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BfaI	CTAG	2 cut(s)	110, 288
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	2 cut(s)	457, 546
BmtI	GCTAGC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	96, 209
Bse118I	RCCGGY	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	96, 209
BseGI	GGATG	2 cut(s)	205, 567
BseMI	GCAATG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	339, 543
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	531
BsnI	GGCC	2 cut(s)	339, 543
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	173, 187
BspACI	CCGC	2 cut(s)	8, 559
BspANI	GGCC	2 cut(s)	339, 543
BspLI	GGNNCC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	2 cut(s)	96, 209
BssMI	GATC	2 cut(s)	173, 187
BssT1I	CCWWGG	2 cut(s)	96, 209
BstAUI	TGTACA	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	111, 494
BstF5I	GGATG	2 cut(s)	205, 567
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	176, 190
BstMBI	GATC	2 cut(s)	173, 187
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstV1I	GCAGC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	339, 543
BtsCI	GGATG	2 cut(s)	205, 567
Cac8I	GCNNGC	2 cut(s)	111, 494
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	541
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	5 cut(s)	109, 113, 339, 534, 543
CviKI_1	RGCY	5 cut(s)	109, 113, 339, 534, 543
CviQI	GTAC	1 cut(s)	233
DpnI	GATC	2 cut(s)	175, 189
DpnII	GATC	2 cut(s)	173, 187
Eco130I	CCWWGG	2 cut(s)	96, 209
Eco47III	AGCGCT	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	96, 209
ErhI	CCWWGG	2 cut(s)	96, 209
FaeI	CATG	1 cut(s)	377
FaiI	YATR	9 cut(s)	50, 58, 60, 334, 336, 343, 349, 351, 375
FatI	CATG	1 cut(s)	373
FauNDI	CATATG	2 cut(s)	334, 349
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	2 cut(s)	110, 288
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	339, 543
HapII	CCGG	1 cut(s)	531
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	5 cut(s)	151, 242, 353, 383, 460
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	4 cut(s)	16, 28, 235, 523
Hpy188III	TCNNGA	2 cut(s)	270, 464
Hpy8I	GTNNAC	4 cut(s)	16, 28, 235, 523
HpyCH4V	TGCA	3 cut(s)	126, 194, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	1 cut(s)	121
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	173, 187
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	2 cut(s)	478, 544
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	457, 546
MaeI	CTAG	2 cut(s)	110, 288
MalI	GATC	2 cut(s)	175, 189
MboI	GATC	2 cut(s)	173, 187
MboII	GAAGA	2 cut(s)	90, 309
MfeI	CAATTG	1 cut(s)	378
MluCI	AATT	4 cut(s)	378, 430, 497, 545
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	429, 482, 511
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	6 cut(s)	306, 326, 443, 522, 536, 548
MspI	CCGG	1 cut(s)	531
MunI	CAATTG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	540
NdeI	CATATG	2 cut(s)	334, 349
NdeII	GATC	2 cut(s)	173, 187
NheI	GCTAGC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	4 cut(s)	242, 353, 383, 460
PkrI	GCNGC	1 cut(s)	125
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	541
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	6 cut(s)	306, 326, 443, 522, 536, 548
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	2 cut(s)	173, 187
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	1 cut(s)	145
SetI	ASST	3 cut(s)	21, 111, 522
SfaNI	GCATC	2 cut(s)	457, 546
Sse9I	AATT	4 cut(s)	378, 430, 497, 545
SsiI	CCGC	2 cut(s)	8, 559
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	2 cut(s)	110, 288
StyI	CCWWGG	2 cut(s)	96, 209
TaqI	TCGA	2 cut(s)	176, 269
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	4 cut(s)	378, 430, 497, 545
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	4 cut(s)	242, 353, 383, 460
Tru1I	TTAA	6 cut(s)	306, 326, 443, 522, 536, 548
Tru9I	TTAA	6 cut(s)	306, 326, 443, 522, 536, 548
TseI	GCWGC	1 cut(s)	123
XapI	RAATTY	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	2 cut(s)	110, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.