Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

9076695 .. 9080544

Gene Structure 3850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2553 bp

ATGAATATAGCCTTGCTTCTGCTTTTTTTGGTTTTCTTCAAGGATACTAGTGGACTCATTACTAATGTCACTACAAGACCTGATGTATTGAACATTGGTTCGATGTTCACTTTCGATTCTGTCATTGGGAAAATTGCAAAACTTGCCATAACACTTGCGGTTGAAGATGTCAATTCCAATCCCAACATTCTCAATGGCACAAAGCTCTCACTCAAAATGCATAACACCAAATCGAGTGACTTCCTCGGAATCATTGAAGCTTTGCAGTTTATGGAGAATGACACAGTGGCCATAATCGGCCCCCAATTCTCAGCTACAGCTCACGTTATCTCACACATAGCAAATGAGCTCCAAGTGCCTTTGTTATCATTTGCAGCAACAGATCCTACTCTATCTCCTGTTCAGTTCCCTTTCTTGGTTCGAACAACGCAAAGCGATCTCTTTCAGATGACAGCAGTGGTAGACCTTGTTGTTCACTACGAGTGGAGAGATGTCATAGCAATATATGTAGATGACGATTTTGGAAGAAATGCTATTGCTTCCTTGGGTGATAAGCTAGTCGAAAAGCGCTGCAAGATTTCATACAAAGTTCCATTGACTCCCACAGCAACAAAAGATGAGATCAGAAAGGCACTAATCAGTGTGTCTACAATGGAGTCTAGGATTCTGATCCTGCACATTTATACTAGTTGGGGTCTTCAAGTACTTGAAGAAGCGCAAGAGCAGAAGATGATGGATAGTGGATATGTGTGGATTGCTACTGATTGGTTCTCCACCATTTTAGATACAGATTCTTCTCTCCGTGTAGTGCAAACAAGCAGCATCCAAGGCGTTCTCACATTGCGAATGTACACACCCGATTCACATCTCAAGACTGAATTCAAGTCGAGATGGAGCAACTTGACTAGGGCAAGAAGATTACTTAATAACACTTCTTTTGGGTTAAATACATATGGCCTATACGCGTATGATTCGGTGTTGCTTCTTGCTCAAGCAATAGAATCATTTTTCGCTAATGGGTGGAATATTTCCTTTTCAAATGACACAAATTTGAGGGAGTTAAGTGGTGGGAAGTTTAATCTTGATGCTTTGAACATTTTCAATGGAGGCAGGCAATTGCTCAAAAGCATTTTAGAGGTTAACACAACTGGCTTAACGGGGCCAATTAAGTTTGATGCAGATGGGAACTTACTCAATCCTGCATTTGAAGTCATCAATGTGATTGGCACAGGGACTAGAACTATTGGCTATTGGTCTAACTCCTCGGGTTTAAATGTTCTTCCTCCAGAAAAGTTCCAAATGAAGATGCAGACTAATGGCTCCAGCGCCGGTACTCAAAAACTGTACAGTGTGATCTGGCCTGGACAAACAACTGAGAAGCCTCGCGGATGGGTTTTCCCTTACAATGGCAGAAAGCTCAGGATTGGAGTCCCCCGTCGAGTTAGCTCCCCCGAGTTTGTGGGTATAAAAGGCACTGATTTCAGTGGTTACTGCATTGAGGTCTTTCAGGCTGCACTAAATGAGTTACCATATGGTGTACCATACAAGTATGTCCCTTTTGGAGATGGTATCAAAAACCCAGAAACCAATGACCTTCTCCACAGAGTCCAAATTGGGGTCGGTATAAATAGTTTTGTAAGCTTGAATCTATCTAATTTTTTTTTTCTTTTGGGGTTTCGCAGGTTTAGCTTTTCGACTTTGTTCTTCTCCCAGAAAGAGAAAACCGGCAGCACACTTGGTCGCTTTGTGGTAATCATATGGCTATTTGTGGTACTAATACTCAACTCCAGCTACACTGCAAGCTTGACTTCAATCCTCACAGTGGAGCAACTTTCTTCACCTGTGAAAGGGATTGAAAGTTTAGTGACAGGCACTGAGCCCATTGGTTATCTAAGGGGTTCCTTTGCTGAAGCTTACTTAACCGACGAGCTAAACATACATCATAGCAGACTTGTTGCCCTTAACTCGCCGGAAGATTATGAGAAGGCCTTGAAGAAAGGTCCTAGAGCAGGTGGTGTTGCTGCGGTGATTGATAAGCGTGCTTACATGGAGCTCTTCCTCTCTGGTCGATGTGGATATAGTATTGTTGGTCAAGAGTTCACTAAAATGGGTTGGGGATTTGCCTTTTCGAGAGACTCCCCATTGGCAATTGACATGTCGACCGCCATATTGAAGCTATCGGAGAACGGAAACCTCCAAAAGATCCATGACAAGTGGCTAATGAAAAGTGCTTGCAGTGCAGAAGGAGCAAAGCAAGCAGTAGACCGACTTCCGCTAAAGAGCTTTTGGGGCCTCTTTCTACTAAGCGGCATTGCTTGCTTTCTTGCTCTTCTTCTCTATGTACTTCGCATGGTTCGACAGTACTACCGGCATGCATATTCCGACATCGAGTGCTCACAATCAACAGGACGACTGAAGTCGTTTGTTTCGTTTGTAAATAAGAGGGAACAAGAAGTGAAAAGCAGTTCCAAGAGAAGAAGGACTGATAACAAAGCCTCAAATAAGATAGTGCATCATCAAGAATGCAGTGGCGATGGTTTGGATGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

851

Amino Acids

94.65

Weight (kDa)

8.8

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	43 - 335	2.8e-12	Periplasmic binding protein
ANF_receptor	PF01094	47 - 409	2.5e-90	Receptor family ligand binding region
Lig_chan	PF00060	559 - 773	7.4e-23	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2000
Acc36I	ACCTGC	2 cut(s)	1671, 2000
AccI	GTMKAC	4 cut(s)	462, 647, 2159, 2262
AccII	CGCG	2 cut(s)	965, 1386
AciI	CCGC	6 cut(s)	158, 1386, 2024, 2163, 2273, 2307
AclWI	GGATC	3 cut(s)	377, 664, 2197
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	878, 1048
AcuI	CTGAAG	2 cut(s)	1929, 2435
AfaI	GTAC	8 cut(s)	705, 851, 1333, 1346, 1539, 1773, 2343, 2363
AfeI	AGCGCT	1 cut(s)	569
AfiI	CCNNNNNNNGG	6 cut(s)	415, 1406, 1615, 1822, 1847, 2009
AflIII	ACRYGT	2 cut(s)	963, 2154
AhlI	ACTAGT	2 cut(s)	47, 686
AjnI	CCWGG	1 cut(s)	1360
Alw21I	GWGCWC	3 cut(s)	351, 2055, 2396
Alw26I	GTCTC	1 cut(s)	2127
AlwI	GGATC	3 cut(s)	377, 664, 2197
AlwNI	CAGNNNCTG	1 cut(s)	1874
Ama87I	CYCGRG	2 cut(s)	1264, 1451
Aor51HI	AGCGCT	1 cut(s)	569
AoxI	GGCC	7 cut(s)	288, 298, 955, 1160, 1358, 1986, 2290
ApeKI	GCWGC	6 cut(s)	374, 570, 819, 1511, 1728, 2021
ApoI	RAATTY	2 cut(s)	878, 1048
Asp700I	GAANNNNTTC	1 cut(s)	1097
AspLEI	GCGC	3 cut(s)	570, 718, 1328
AspS9I	GGNCC	4 cut(s)	299, 1160, 2000, 2290
AsuHPI	GGTGA	3 cut(s)	560, 1830, 2038
AsuII	TTCGAA	1 cut(s)	421
AvaI	CYCGRG	2 cut(s)	1264, 1451
AvaII	GGWCC	1 cut(s)	2000
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	3 cut(s)	351, 1881, 2055
BarI	GAAGNNNNNNTAC	2 cut(s)	2253, 2285
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	3 cut(s)	351, 2055, 2396
BbvI	GCAGC	6 cut(s)	386, 557, 831, 1498, 1740, 2008
BccI	CCATC	6 cut(s)	727, 885, 1175, 1383, 1559, 2528
BciT130I	CCWGG	1 cut(s)	1362
BciVI	GTATCC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	2127
BcuI	ACTAGT	2 cut(s)	47, 686
BfaI	CTAG	7 cut(s)	48, 557, 660, 687, 906, 1236, 2004
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	2 cut(s)	571, 1329
BfuAI	ACCTGC	2 cut(s)	1671, 2000
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	7 cut(s)	375, 571, 820, 1512, 1729, 2022, 2308
BlsI	GCNGC	7 cut(s)	376, 572, 821, 1513, 1730, 2023, 2309
BmcAI	AGTACT	2 cut(s)	705, 2363
Bme1390I	CCNGG	1 cut(s)	1362
Bme18I	GGWCC	1 cut(s)	2000
BmeT110I	CYCGRG	2 cut(s)	1264, 1451
BmgT120I	GGNCC	4 cut(s)	299, 1160, 2000, 2290
BmiI	GGNNCC	5 cut(s)	301, 1161, 1321, 1900, 2291
BmrFI	CCNGG	1 cut(s)	1362
BmsI	GCATC	5 cut(s)	831, 1075, 1165, 1296, 2521
BoxI	GACNNNNGTC	1 cut(s)	2416
BpiI	GAAGAC	1 cut(s)	689
BpmI	CTGGAG	3 cut(s)	1269, 1306, 1771
Bpu10I	CCTNAGC	1 cut(s)	1418
Bpu14I	TTCGAA	1 cut(s)	421
BpuEI	CTTGAG	2 cut(s)	854, 975
BsaBI	GATNNNNATC	2 cut(s)	668, 864
BsaJI	CCNNGG	4 cut(s)	244, 543, 826, 1263
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	6 cut(s)	415, 1406, 1615, 1822, 1847, 2009
Bse118I	RCCGGY	3 cut(s)	1328, 1724, 2367
Bse1I	ACTGG	1 cut(s)	1153
Bse3DI	GCAATG	2 cut(s)	839, 2310
Bse8I	GATNNNNATC	2 cut(s)	668, 864
BseBI	CCWGG	1 cut(s)	1362
BseDI	CCNNGG	4 cut(s)	244, 543, 826, 1263
BseGI	GGATG	3 cut(s)	822, 1394, 2548
BseJI	GATNNNNATC	2 cut(s)	668, 864
BseLI	CCNNNNNNNGG	6 cut(s)	415, 1406, 1615, 1822, 1847, 2009
BseMI	GCAATG	2 cut(s)	839, 2310
BseMII	CTCAG	4 cut(s)	324, 1365, 1432, 1866
BseNI	ACTGG	1 cut(s)	1153
BseRI	GAGGAG	1 cut(s)	1252
BseXI	GCAGC	6 cut(s)	386, 557, 831, 1498, 1740, 2008
BsgI	GTGCAG	3 cut(s)	659, 1497, 2259
Bsh1236I	CGCG	2 cut(s)	965, 1386
Bsh1285I	CGRYCG	1 cut(s)	2163
BshFI	GGCC	7 cut(s)	290, 300, 957, 1162, 1360, 1988, 2292
BsiEI	CGRYCG	1 cut(s)	2163
BsiHKAI	GWGCWC	3 cut(s)	351, 2055, 2396
BsiHKCI	CYCGRG	2 cut(s)	1264, 1451
BsiSI	CCGG	4 cut(s)	1329, 1725, 1970, 2368
BslFI	GGGAC	3 cut(s)	1246, 1415, 1538
BslI	CCNNNNNNNGG	6 cut(s)	415, 1406, 1615, 1822, 1847, 2009
BsmAI	GTCTC	1 cut(s)	2127
BsmFI	GGGAC	3 cut(s)	1246, 1415, 1538
BsmI	GAATGC	1 cut(s)	2528
BsnI	GGCC	7 cut(s)	290, 300, 957, 1162, 1360, 1988, 2292
BsoBI	CYCGRG	2 cut(s)	1264, 1451
Bsp119I	TTCGAA	1 cut(s)	421
Bsp1286I	GDGCHC	4 cut(s)	351, 1881, 2055, 2396
Bsp1407I	TGTACA	2 cut(s)	849, 1344
Bsp143I	GATC	6 cut(s)	382, 436, 621, 669, 1353, 2202
BspACI	CCGC	6 cut(s)	158, 1386, 2024, 2163, 2273, 2307
BspANI	GGCC	7 cut(s)	290, 300, 957, 1162, 1360, 1988, 2292
BspCNI	CTCAG	4 cut(s)	323, 1366, 1431, 1867
BspFNI	CGCG	2 cut(s)	965, 1386
BspLI	GGNNCC	5 cut(s)	301, 1161, 1321, 1900, 2291
BspMI	ACCTGC	2 cut(s)	1671, 2000
BspPI	GGATC	3 cut(s)	377, 664, 2197
BspQI	GCTCTTC	2 cut(s)	2060, 2334
BspT104I	TTCGAA	1 cut(s)	421
BsrDI	GCAATG	2 cut(s)	839, 2310
BsrFI	RCCGGY	3 cut(s)	1328, 1724, 2367
BsrGI	TGTACA	2 cut(s)	849, 1344
BsrI	ACTGG	1 cut(s)	1153
BssAI	RCCGGY	3 cut(s)	1328, 1724, 2367
BssECI	CCNNGG	4 cut(s)	244, 543, 826, 1263
BssMI	GATC	6 cut(s)	382, 436, 621, 669, 1353, 2202
BssT1I	CCWWGG	2 cut(s)	543, 826
Bst2UI	CCWGG	1 cut(s)	1362
Bst4CI	ACNGT	5 cut(s)	286, 1344, 1349, 1822, 2361
Bst6I	CTCTTC	2 cut(s)	2060, 2334
BstAPI	GCANNNNNTGC	2 cut(s)	143, 2316
BstAUI	TGTACA	2 cut(s)	849, 1344
BstBI	TTCGAA	1 cut(s)	421
BstC8I	GCNNGC	7 cut(s)	1112, 1801, 2040, 2233, 2256, 2317, 2373
BstDEI	CTNAG	6 cut(s)	310, 1374, 1418, 1875, 1892, 2303
BstENI	CCTNNNNNAGG	2 cut(s)	1845, 2007
BstF5I	GGATG	3 cut(s)	822, 1394, 2548
BstFNI	CGCG	2 cut(s)	965, 1386
BstH2I	RGCGCY	2 cut(s)	571, 1329
BstHHI	GCGC	3 cut(s)	570, 718, 1328
BstKTI	GATC	6 cut(s)	385, 439, 624, 672, 1356, 2205
BstMAI	GTCTC	1 cut(s)	2127
BstMBI	GATC	6 cut(s)	382, 436, 621, 669, 1353, 2202
BstMCI	CGRYCG	1 cut(s)	2163
BstMWI	GCNNNNNNNGC	9 cut(s)	143, 355, 828, 1686, 2237, 2246, 2255, 2289, 2316
BstNI	CCWGG	1 cut(s)	1362
BstNSI	RCATGY	2 cut(s)	2158, 2375
BstPAI	GACNNNNGTC	1 cut(s)	2416
BstSCI	CCNGG	1 cut(s)	1360
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	2 cut(s)	965, 1386
BstV1I	GCAGC	6 cut(s)	386, 557, 831, 1498, 1740, 2008
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	2 cut(s)	382, 2202
BstYI	RGATCY	2 cut(s)	382, 2202
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	7 cut(s)	290, 300, 957, 1162, 1360, 1988, 2292
BtgZI	GCGATG	1 cut(s)	2547
BtsCI	GGATG	3 cut(s)	822, 1394, 2548
BtsI	GCAGTG	4 cut(s)	462, 1794, 2242, 2533
BveI	ACCTGC	2 cut(s)	1671, 2000
Cac8I	GCNNGC	7 cut(s)	1112, 1801, 2040, 2233, 2256, 2317, 2373
CaiI	CAGNNNCTG	1 cut(s)	1874
CfoI	GCGC	3 cut(s)	570, 718, 1328
Cfr10I	RCCGGY	3 cut(s)	1328, 1724, 2367
Cfr13I	GGNCC	4 cut(s)	299, 1160, 2000, 2290
Csp6I	GTAC	8 cut(s)	704, 850, 1332, 1345, 1538, 1772, 2342, 2362
CviAII	CATG	5 cut(s)	2047, 2155, 2207, 2350, 2372
CviQI	GTAC	8 cut(s)	704, 850, 1332, 1345, 1538, 1772, 2342, 2362
DdeI	CTNAG	6 cut(s)	310, 1374, 1418, 1875, 1892, 2303
DpnI	GATC	6 cut(s)	384, 438, 623, 671, 1355, 2204
DpnII	GATC	6 cut(s)	382, 436, 621, 669, 1353, 2202
DraI	TTTAAA	1 cut(s)	1272
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	2060, 2334
EarI	CTCTTC	2 cut(s)	2060, 2334
Ecl136II	GAGCTC	2 cut(s)	349, 2053
Eco130I	CCWWGG	2 cut(s)	543, 826
Eco147I	AGGCCT	1 cut(s)	1988
Eco24I	GRGCYC	3 cut(s)	351, 1881, 2055
Eco47I	GGWCC	1 cut(s)	2000
Eco47III	AGCGCT	1 cut(s)	569
Eco53kI	GAGCTC	2 cut(s)	349, 2053
Eco57I	CTGAAG	2 cut(s)	1929, 2435
Eco88I	CYCGRG	2 cut(s)	1264, 1451
EcoICRI	GAGCTC	2 cut(s)	349, 2053
EcoNI	CCTNNNNNAGG	2 cut(s)	1845, 2007
EcoO109I	RGGNCCY	2 cut(s)	2000, 2290
EcoRI	GAATTC	1 cut(s)	878
EcoRII	CCWGG	1 cut(s)	1360
EcoT14I	CCWWGG	2 cut(s)	543, 826
EcoT22I	ATGCAT	2 cut(s)	222, 2377
EcoT38I	GRGCYC	3 cut(s)	351, 1881, 2055
ErhI	CCWWGG	2 cut(s)	543, 826
FaeI	CATG	5 cut(s)	2050, 2158, 2210, 2353, 2375
FalI	AAGNNNNNCTT	2 cut(s)	1792, 1824
FaqI	GGGAC	3 cut(s)	1246, 1415, 1538
FatI	CATG	5 cut(s)	2046, 2154, 2206, 2349, 2371
FauNDI	CATATG	3 cut(s)	952, 1531, 1757
FblI	GTMKAC	4 cut(s)	462, 647, 2159, 2262
Fnu4HI	GCNGC	7 cut(s)	375, 571, 820, 1512, 1729, 2022, 2308
FokI	GGATG	2 cut(s)	809, 1401
FriOI	GRGCYC	3 cut(s)	351, 1881, 2055
Fsp4HI	GCNGC	7 cut(s)	375, 571, 820, 1512, 1729, 2022, 2308
FspBI	CTAG	7 cut(s)	48, 557, 660, 687, 906, 1236, 2004
GlaI	GCGC	3 cut(s)	569, 717, 1327
GluI	GCNGC	7 cut(s)	375, 571, 820, 1512, 1729, 2022, 2308
GsuI	CTGGAG	3 cut(s)	1269, 1306, 1771
HaeII	RGCGCY	2 cut(s)	571, 1329
HaeIII	GGCC	7 cut(s)	290, 300, 957, 1162, 1360, 1988, 2292
HapII	CCGG	4 cut(s)	1329, 1725, 1970, 2368
HhaI	GCGC	3 cut(s)	570, 718, 1328
Hin1II	CATG	5 cut(s)	2050, 2158, 2210, 2353, 2375
Hin6I	GCGC	3 cut(s)	568, 716, 1326
HinP1I	GCGC	3 cut(s)	568, 716, 1326
HincII	GTYRAC	2 cut(s)	1141, 2160
HindII	GTYRAC	2 cut(s)	1141, 2160
HindIII	AAGCTT	4 cut(s)	258, 1639, 1801, 1911
HpaI	GTTAAC	1 cut(s)	1141
HpaII	CCGG	4 cut(s)	1329, 1725, 1970, 2368
HphI	GGTGA	3 cut(s)	560, 1830, 2038
Hpy188I	TCNGA	6 cut(s)	248, 447, 626, 669, 2182, 2383
Hpy188III	TCNNGA	8 cut(s)	871, 888, 1082, 1286, 1420, 2093, 2130, 2519
Hpy99I	CGWCG	2 cut(s)	1440, 1928
HpyAV	CCTTC	4 cut(s)	1604, 1978, 2237, 2472
HpyCH4III	ACNGT	5 cut(s)	286, 1344, 1349, 1822, 2361
HpyCH4IV	ACGT	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	9 cut(s)	143, 355, 828, 1686, 2237, 2246, 2255, 2289, 2316
HpyF3I	CTNAG	6 cut(s)	310, 1374, 1418, 1875, 1892, 2303
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	5 cut(s)	2050, 2158, 2210, 2353, 2375
HspAI	GCGC	3 cut(s)	568, 716, 1326
KspAI	GTTAAC	1 cut(s)	1141
Kzo9I	GATC	6 cut(s)	382, 436, 621, 669, 1353, 2202
LguI	GCTCTTC	2 cut(s)	2060, 2334
LmnI	GCTCC	7 cut(s)	354, 894, 1325, 1451, 1825, 2050, 2246
Lsp1109I	GCAGC	6 cut(s)	386, 557, 831, 1498, 1740, 2008
LweI	GCATC	5 cut(s)	831, 1075, 1165, 1296, 2521
MaeI	CTAG	7 cut(s)	48, 557, 660, 687, 906, 1236, 2004
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	5 cut(s)	67, 236, 1487, 1524, 1864
MalI	GATC	6 cut(s)	384, 438, 623, 671, 1355, 2204
MboI	GATC	6 cut(s)	382, 436, 621, 669, 1353, 2202
MfeI	CAATTG	2 cut(s)	1115, 2148
MflI	RGATCY	2 cut(s)	382, 2202
MhlI	GDGCHC	4 cut(s)	351, 1881, 2055, 2396
MlsI	TGGCCA	1 cut(s)	290
MluI	ACGCGT	1 cut(s)	963
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	6 cut(s)	48, 592, 665, 1437, 1614, 2129
MmeI	TCCRAC	1 cut(s)	2406
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	2 cut(s)	222, 2377
MroXI	GAANNNNTTC	1 cut(s)	1097
MscI	TGGCCA	1 cut(s)	290
MslI	CAYNNNNRTG	2 cut(s)	1217, 2105
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	4 cut(s)	1329, 1725, 1970, 2368
MspR9I	CCNGG	1 cut(s)	1362
MunI	CAATTG	2 cut(s)	1115, 2148
Mva1269I	GAATGC	1 cut(s)	2528
MvaI	CCWGG	1 cut(s)	1362
MvnI	CGCG	2 cut(s)	965, 1386
MwoI	GCNNNNNNNGC	9 cut(s)	143, 355, 828, 1686, 2237, 2246, 2255, 2289, 2316
NdeI	CATATG	3 cut(s)	952, 1531, 1757
NdeII	GATC	6 cut(s)	382, 436, 621, 669, 1353, 2202
NlaIII	CATG	5 cut(s)	2050, 2158, 2210, 2353, 2375
NlaIV	GGNNCC	5 cut(s)	301, 1161, 1321, 1900, 2291
NmuCI	GTSAC	3 cut(s)	67, 236, 1864
NsiI	ATGCAT	2 cut(s)	222, 2377
NspI	RCATGY	2 cut(s)	2158, 2375
NspV	TTCGAA	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	2375
PaqCI	CACCTGC	1 cut(s)	2000
PceI	AGGCCT	1 cut(s)	1988
PciI	ACATGT	1 cut(s)	2154
PciSI	GCTCTTC	2 cut(s)	2060, 2334
PcsI	WCGNNNNNNNCGW	2 cut(s)	2353, 2426
PctI	GAATGC	1 cut(s)	2528
PdmI	GAANNNNTTC	1 cut(s)	1097
PfeI	GAWTC	8 cut(s)	116, 249, 664, 791, 860, 971, 1001, 1645
PkrI	GCNGC	7 cut(s)	376, 572, 821, 1513, 1730, 2023, 2309
PleI	GAGTC	6 cut(s)	48, 592, 664, 1436, 1613, 2129
PpsI	GAGTC	6 cut(s)	48, 592, 664, 1436, 1613, 2129
PpuMI	RGGWCCY	1 cut(s)	2000
PscI	ACATGT	1 cut(s)	2154
PshAI	GACNNNNGTC	1 cut(s)	2416
Psp124BI	GAGCTC	2 cut(s)	351, 2055
Psp5II	RGGWCCY	1 cut(s)	2000
Psp6I	CCWGG	1 cut(s)	1360
PspGI	CCWGG	1 cut(s)	1360
PspN4I	GGNNCC	5 cut(s)	301, 1161, 1321, 1900, 2291
PspPI	GGNCC	4 cut(s)	299, 1160, 2000, 2290
PspPPI	RGGWCCY	1 cut(s)	2000
PstNI	CAGNNNCTG	1 cut(s)	1874
PsuI	RGATCY	2 cut(s)	382, 2202
RsaI	GTAC	8 cut(s)	705, 851, 1333, 1346, 1539, 1773, 2343, 2363
RsaNI	GTAC	8 cut(s)	704, 850, 1332, 1345, 1538, 1772, 2342, 2362
RseI	CAYNNNNRTG	2 cut(s)	1217, 2105
SacI	GAGCTC	2 cut(s)	351, 2055
SalI	GTCGAC	1 cut(s)	2158
SapI	GCTCTTC	2 cut(s)	2060, 2334
SatI	GCNGC	7 cut(s)	375, 571, 820, 1512, 1729, 2022, 2308
Sau3AI	GATC	6 cut(s)	382, 436, 621, 669, 1353, 2202
Sau96I	GGNCC	4 cut(s)	299, 1160, 2000, 2290
ScaI	AGTACT	2 cut(s)	705, 2363
SchI	GAGTC	6 cut(s)	48, 592, 665, 1437, 1614, 2129
ScrFI	CCNGG	1 cut(s)	1362
SduI	GDGCHC	4 cut(s)	351, 1881, 2055, 2396
SfaNI	GCATC	5 cut(s)	831, 1075, 1165, 1296, 2521
SfcI	CTRYAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	421
SinI	GGWCC	1 cut(s)	2000
SmiMI	CAYNNNNRTG	2 cut(s)	1217, 2105
SmlI	CTYRAG	2 cut(s)	869, 990
SmoI	CTYRAG	2 cut(s)	869, 990
SpeI	ACTAGT	2 cut(s)	47, 686
SphI	GCATGC	1 cut(s)	2375
SseBI	AGGCCT	1 cut(s)	1988
SsiI	CCGC	6 cut(s)	158, 1386, 2024, 2163, 2273, 2307
SspI	AATATT	1 cut(s)	1027
SspMI	CTAG	7 cut(s)	48, 557, 660, 687, 906, 1236, 2004
SstI	GAGCTC	2 cut(s)	351, 2055
StuI	AGGCCT	1 cut(s)	1988
StyD4I	CCNGG	1 cut(s)	1360
StyI	CCWWGG	2 cut(s)	543, 826
TaaI	ACNGT	5 cut(s)	286, 1344, 1349, 1822, 2361
TaiI	ACGT	1 cut(s)	327
TaqII	GACCGA	1 cut(s)	2280
TatI	WGTACW	5 cut(s)	703, 849, 1344, 2341, 2361
TauI	GCSGC	1 cut(s)	2310
TfiI	GAWTC	8 cut(s)	116, 249, 664, 791, 860, 971, 1001, 1645
TseFI	GTSAC	3 cut(s)	67, 236, 1864
TseI	GCWGC	6 cut(s)	374, 570, 819, 1511, 1728, 2021
Tsp45I	GTSAC	3 cut(s)	67, 236, 1864
TspDTI	ATGAA	4 cut(s)	17, 570, 1316, 2237
TspGWI	ACGGA	2 cut(s)	791, 2202
VpaK11BI	GGWCC	1 cut(s)	2000
XagI	CCTNNNNNAGG	2 cut(s)	1845, 2007
XapI	RAATTY	2 cut(s)	878, 1048
XceI	RCATGY	2 cut(s)	2158, 2375
XmiI	GTMKAC	4 cut(s)	462, 647, 2159, 2262
XmnI	GAANNNNTTC	1 cut(s)	1097
XspI	CTAG	7 cut(s)	48, 557, 660, 687, 906, 1236, 2004
ZrmI	AGTACT	2 cut(s)	705, 2363
Zsp2I	ATGCAT	2 cut(s)	222, 2377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.