Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

22442815 .. 22447661

Gene Structure 4847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG134100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

ATGAATATAGCCTTGCTTCTGTTTTTTTTGGTTTTCTGTAAGGGTTCTCATACTAGTGGACTCATTACTAATGTCACTACAAGACCTGATGTATTGAACATTGGTTCGATGTTCACTTTCGATTCTGTCATTGGGAAAATTGCAAAACTTGCCATAACACTTGCGGTTGAAGATGTCAATTCCAATCCCAACATTCTCAATGGCACAAAGCTCTCACTCAAAATGCATAACACCAAATCGAGTGACTTCCTCGGAATCGTGGAAGCTTTGCAGTTTATGGAGAATGACACAGTGGCCATAATTGGCCCCCAATTCTCAGCTACAGCTCATGTTATCTCACACATAGCAAATGAGCTCCAAGTGCCTTTGTTATCATTTGCAGCAACAGACCCTACTCTATCTCCTGTTCAGTTCCCTTTCTTTGTTCGAACAACGCGAAGCGATCTCTTTCAGATGACAGCAGTGGTAGACCTTGTTGTTCACTACCAGTGGAGAGATGTCATAGCAATATATGTAGATGACGATTTTGGAAGAAATGCTATTGCTTCCTTGGGTGATAAGCTAGCCGAAAAGCGCTGCAAGATTTCATACAAAGTGCCTTTGACTCCCACAGCAACAAAAGATGAGATCAGAAAGGCACTGATCAGTGTGTCTACAATGGAATCTAGGATTCTGATCCTGCACATTTATACTAGTTGGGGTCTGCAAGTACTTGAAGAAGCGCAGGAGCAGAAGATGATGGATAGTGGATATGTGTGGATTGCTACTGATTGGTTCTCCACCATTTTAGATACTGATCCTTCTCTCCCTCTAGTGCAAACAAACAACATCCAAGGCGTTCTCACATTGCGAATGTACACACCTGATTCACAACTGAAGACTGAATTCAAGTCGAGATGGAGCAACTTGACTAGGGCAAGAAGATTACTTAATAACACTTCTTTTGGGTTAAATACATATGGCCTATACGCGTATGATTCGGTGTTGCTTCTTGCTCAAGCAATCGAATCATTTTTCGCTATTGGGTGGAATATTTCCTTTTCAAATGACACAAATTTGAGGGAGTTAAGTGGTGGGAAGTTGAATCTTGATGCTTTGAACATTTTCAATGGAGGCAGGCAATTGCTCAAAAGCATTTTAGAGGTTAACACTACCGGCTTAACAGGGCCAATTAAGTTTGATGCAGATGGGAACTTACTCAATCCTGCATTTGAAGTCATCAATGTGATTGGCACAGGGACTAGAACTATTGGCTATTGGTCTAACTCCTCGGGTTTAAATGTTCTTCCTCCAGAAAAGCTCCAAATGAAGATGCAGACTAATGGCTCCAACGCCGGTACTCAAAAACTGTACAGTGTGATCTGGCCTGGACAAACAACTGAGAAGCCTCGCGGATGGGTTTTCCCTTACAATGGCAGAAAGCTCAGGATTGGAGTCCCCCATGGAGTTAGCTACCCCGAGTTTGTGGGTATAAAAGGCACTGATTTCAGTGGTTACTGCATTGAGGTCTTTCAGAATGCACTAAATGAGTTACCATATGGTGTGCCATACAAGTATGTCCCTTTTGGAGATGGTATCAAAAACCCAGAAAACAATGACCTTCTGCACAGAGTCCAAATTGGGGAGTTTGATGGTGTAGTAGGAGCTATTACAATCACTACTAACAGAACAAAGATGGTGGATTTTACTCAACCTTATATTGAGTCTGGGCTAGTTGTGGTTGCTCCAATAAGGAAGATGGACTCCAGTGCTTGGGCTTTTCTGAGACCCTTTACTCCAATGATGTGGGGTGTTACTGGTGTTTTCTTCCTAGTTGTGGGAACAGTTGTTTGGATTTTGGAGCGCAGGACTAATGAGGATTTTAGGGGGCCTCCAAAGAGACAATTTGTCACAATTGTTTGGTTTAGCTTTTCGACTTTGTTCTTCTCCCAGAAAGAGAAAACTGGCAGCACACTTGGTCGCTTTGTGGTAATCATATGGCTATTTGTGGTATTAATACTCAACTCCAGCTACACTGCAAGCTTGACTTCGATCCTCACAGTGGAGCAACTTTCTTCACCTGTGAAAGGGATTGAAAGTTTAGTGACAGGCACTGAGCCCATTGGTTATCAAAGGGGTTCCTTTGCTGAAGCTTACTTAACCGACGAGCTAAACATACATCATAGCAGACTTGTTGCCCTTAACTCGCCGGAAGATTATGAGAAGGCCTTGAAGAAAGGTCCTAGTGCAGGTGGTGTTGCTGCGGTGATTGATGAGCGTGCTTACATGGAGCTCTTCCTCTCTAGTCGATGTGGATATAGTATTGTTGGTCAAGAGTTCACTAAAATGGGTTGGGGATTTGTAAGTATCTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

785

Amino Acids

87.28

Weight (kDa)

6.59

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	45 - 337	2.2e-13	Periplasmic binding protein
ANF_receptor	PF01094	49 - 411	2.4e-91	Receptor family ligand binding region
SBP_bac_3	PF00497	485 - 575	4.3e-07	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	494 - 575	1e-07	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	595 - 698	4.5e-30	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2219
Acc36I	ACCTGC	1 cut(s)	2219
AccB7I	CCANNNNNTGG	1 cut(s)	1752
AccI	GTMKAC	2 cut(s)	468, 653
AccII	CGCG	3 cut(s)	436, 971, 1392
AciI	CCGC	3 cut(s)	164, 1392, 2243
AclWI	GGATC	3 cut(s)	670, 791, 2026
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	884, 1054
AcuI	CTGAAG	2 cut(s)	896, 2148
AfaI	GTAC	4 cut(s)	711, 857, 1339, 1352
AfeI	AGCGCT	1 cut(s)	575
AfiI	CCNNNNNNNGG	7 cut(s)	1412, 1621, 1752, 1816, 2041, 2066, 2228
AflIII	ACRYGT	1 cut(s)	969
AhdI	GACNNNNNGTC	1 cut(s)	1886
AhlI	ACTAGT	2 cut(s)	53, 692
AjnI	CCWGG	1 cut(s)	1366
AjuI	GAANNNNNNNTTGG	2 cut(s)	1813, 1845
Alw21I	GWGCWC	2 cut(s)	357, 2274
Alw26I	GTCTC	2 cut(s)	1759, 1873
AlwI	GGATC	3 cut(s)	670, 791, 2026
AlwNI	CAGNNNCTG	1 cut(s)	2093
Ama87I	CYCGRG	2 cut(s)	1270, 1457
Aor51HI	AGCGCT	1 cut(s)	575
AoxI	GGCC	7 cut(s)	294, 304, 961, 1166, 1364, 1868, 2205
ApeKI	GCWGC	4 cut(s)	380, 576, 1947, 2240
ApoI	RAATTY	2 cut(s)	884, 1054
AseI	ATTAAT	1 cut(s)	1994
Asp700I	GAANNNNTTC	1 cut(s)	1103
AspLEI	GCGC	3 cut(s)	576, 724, 1845
AspS9I	GGNCC	4 cut(s)	305, 1166, 1868, 2219
AsuHPI	GGTGA	3 cut(s)	566, 2049, 2257
AsuII	TTCGAA	1 cut(s)	427
AsuNHI	GCTAGC	1 cut(s)	562
AvaI	CYCGRG	2 cut(s)	1270, 1457
AvaII	GGWCC	1 cut(s)	2219
BalI	TGGCCA	1 cut(s)	296
BanII	GRGCYC	3 cut(s)	357, 2100, 2274
BbsI	GAAGAC	1 cut(s)	884
Bbv12I	GWGCWC	2 cut(s)	357, 2274
BbvI	GCAGC	4 cut(s)	392, 563, 1959, 2227
BccI	CCATC	8 cut(s)	733, 891, 1181, 1389, 1565, 1625, 1669, 1732
BciT130I	CCWGG	1 cut(s)	1368
BclI	TGATCA	1 cut(s)	642
BcoDI	GTCTC	2 cut(s)	1759, 1873
BcuI	ACTAGT	2 cut(s)	53, 692
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	577
BfuAI	ACCTGC	1 cut(s)	2219
BisI	GCNGC	4 cut(s)	381, 577, 1948, 2241
BlsI	GCNGC	4 cut(s)	382, 578, 1949, 2242
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	1 cut(s)	1368
Bme18I	GGWCC	1 cut(s)	2219
BmeRI	GACNNNNNGTC	1 cut(s)	1886
BmeT110I	CYCGRG	2 cut(s)	1270, 1457
BmgT120I	GGNCC	4 cut(s)	305, 1166, 1868, 2219
BmiI	GGNNCC	4 cut(s)	307, 1327, 1869, 2119
BmrFI	CCNGG	1 cut(s)	1368
BmsI	GCATC	3 cut(s)	1081, 1171, 1302
BmtI	GCTAGC	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	884
BpmI	CTGGAG	3 cut(s)	1275, 1729, 1990
Bpu10I	CCTNAGC	1 cut(s)	1424
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	981
BsaBI	GATNNNNATC	2 cut(s)	674, 795
BsaI	GGTCTC	1 cut(s)	1759
BsaJI	CCNNGG	5 cut(s)	250, 549, 832, 1269, 1441
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	7 cut(s)	1412, 1621, 1752, 1816, 2041, 2066, 2228
Bse118I	RCCGGY	2 cut(s)	1154, 1334
Bse1I	ACTGG	4 cut(s)	487, 1746, 1801, 1948
Bse3DI	GCAATG	1 cut(s)	845
Bse8I	GATNNNNATC	2 cut(s)	674, 795
BseBI	CCWGG	1 cut(s)	1368
BseDI	CCNNGG	5 cut(s)	250, 549, 832, 1269, 1441
BseGI	GGATG	2 cut(s)	828, 1400
BseJI	GATNNNNATC	2 cut(s)	674, 795
BseLI	CCNNNNNNNGG	7 cut(s)	1412, 1621, 1752, 1816, 2041, 2066, 2228
BseMI	GCAATG	1 cut(s)	845
BseMII	CTCAG	5 cut(s)	330, 1371, 1438, 1754, 2085
BseNI	ACTGG	4 cut(s)	487, 1746, 1801, 1948
BseRI	GAGGAG	1 cut(s)	1258
BseXI	GCAGC	4 cut(s)	392, 563, 1959, 2227
BsgI	GTGCAG	3 cut(s)	665, 1589, 2247
Bsh1236I	CGCG	3 cut(s)	436, 971, 1392
BshFI	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 1870, 2207
BsiHKAI	GWGCWC	2 cut(s)	357, 2274
BsiHKCI	CYCGRG	2 cut(s)	1270, 1457
BsiSI	CCGG	3 cut(s)	1155, 1335, 2189
BslFI	GGGAC	3 cut(s)	1252, 1421, 1544
BslI	CCNNNNNNNGG	7 cut(s)	1412, 1621, 1752, 1816, 2041, 2066, 2228
BsmAI	GTCTC	2 cut(s)	1759, 1873
BsmFI	GGGAC	3 cut(s)	1252, 1421, 1544
BsmI	GAATGC	1 cut(s)	1522
BsnI	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 1870, 2207
Bso31I	GGTCTC	1 cut(s)	1759
BsoBI	CYCGRG	2 cut(s)	1270, 1457
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	3 cut(s)	357, 2100, 2274
Bsp1407I	TGTACA	2 cut(s)	855, 1350
Bsp143I	GATC	7 cut(s)	442, 627, 642, 675, 796, 1359, 2031
Bsp19I	CCATGG	1 cut(s)	1441
BspACI	CCGC	3 cut(s)	164, 1392, 2243
BspANI	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 1870, 2207
BspCNI	CTCAG	5 cut(s)	329, 1372, 1437, 1755, 2086
BspFNI	CGCG	3 cut(s)	436, 971, 1392
BspLI	GGNNCC	4 cut(s)	307, 1327, 1869, 2119
BspMI	ACCTGC	1 cut(s)	2219
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	3 cut(s)	670, 791, 2026
BspQI	GCTCTTC	1 cut(s)	2279
BspT104I	TTCGAA	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	1759
BsrDI	GCAATG	1 cut(s)	845
BsrFI	RCCGGY	2 cut(s)	1154, 1334
BsrGI	TGTACA	2 cut(s)	855, 1350
BsrI	ACTGG	4 cut(s)	487, 1746, 1801, 1948
BssAI	RCCGGY	2 cut(s)	1154, 1334
BssECI	CCNNGG	5 cut(s)	250, 549, 832, 1269, 1441
BssMI	GATC	7 cut(s)	442, 627, 642, 675, 796, 1359, 2031
BssT1I	CCWWGG	3 cut(s)	549, 832, 1441
Bst2UI	CCWGG	1 cut(s)	1368
Bst4CI	ACNGT	5 cut(s)	292, 1350, 1355, 1825, 2041
Bst6I	CTCTTC	1 cut(s)	2279
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstAUI	TGTACA	2 cut(s)	855, 1350
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	4 cut(s)	564, 1118, 2020, 2259
BstDEI	CTNAG	5 cut(s)	316, 1380, 1424, 1763, 2094
BstDSI	CCRYGG	1 cut(s)	1441
BstENI	CCTNNNNNAGG	2 cut(s)	2064, 2226
BstF5I	GGATG	2 cut(s)	828, 1400
BstFNI	CGCG	3 cut(s)	436, 971, 1392
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	3 cut(s)	576, 724, 1845
BstKTI	GATC	7 cut(s)	445, 630, 645, 678, 799, 1362, 2034
BstMAI	GTCTC	2 cut(s)	1759, 1873
BstMBI	GATC	7 cut(s)	442, 627, 642, 675, 796, 1359, 2031
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 361
BstNI	CCWGG	1 cut(s)	1368
BstSCI	CCNGG	1 cut(s)	1366
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	3 cut(s)	436, 971, 1392
BstV1I	GCAGC	4 cut(s)	392, 563, 1959, 2227
BstV2I	GAAGAC	1 cut(s)	884
BstXI	CCANNNNNNTGG	1 cut(s)	1785
BsuRI	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 1870, 2207
BtgI	CCRYGG	1 cut(s)	1441
BtsCI	GGATG	2 cut(s)	828, 1400
BtsI	GCAGTG	2 cut(s)	468, 2013
BveI	ACCTGC	1 cut(s)	2219
Cac8I	GCNNGC	4 cut(s)	564, 1118, 2020, 2259
CaiI	CAGNNNCTG	1 cut(s)	2093
CfoI	GCGC	3 cut(s)	576, 724, 1845
Cfr10I	RCCGGY	2 cut(s)	1154, 1334
Cfr13I	GGNCC	4 cut(s)	305, 1166, 1868, 2219
Csp6I	GTAC	4 cut(s)	710, 856, 1338, 1351
CspCI	CAANNNNNGTGG	2 cut(s)	1659, 1694
CviAII	CATG	4 cut(s)	329, 1442, 2266, 2353
CviQI	GTAC	4 cut(s)	710, 856, 1338, 1351
DdeI	CTNAG	5 cut(s)	316, 1380, 1424, 1763, 2094
DpnI	GATC	7 cut(s)	444, 629, 644, 677, 798, 1361, 2033
DpnII	GATC	7 cut(s)	442, 627, 642, 675, 796, 1359, 2031
DraI	TTTAAA	1 cut(s)	1278
DriI	GACNNNNNGTC	1 cut(s)	1886
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	2279
Eam1105I	GACNNNNNGTC	1 cut(s)	1886
EarI	CTCTTC	1 cut(s)	2279
Ecl136II	GAGCTC	2 cut(s)	355, 2272
Eco130I	CCWWGG	3 cut(s)	549, 832, 1441
Eco147I	AGGCCT	1 cut(s)	2207
Eco24I	GRGCYC	3 cut(s)	357, 2100, 2274
Eco31I	GGTCTC	1 cut(s)	1759
Eco47I	GGWCC	1 cut(s)	2219
Eco47III	AGCGCT	1 cut(s)	575
Eco53kI	GAGCTC	2 cut(s)	355, 2272
Eco57I	CTGAAG	2 cut(s)	896, 2148
Eco88I	CYCGRG	2 cut(s)	1270, 1457
EcoICRI	GAGCTC	2 cut(s)	355, 2272
EcoNI	CCTNNNNNAGG	2 cut(s)	2064, 2226
EcoO109I	RGGNCCY	2 cut(s)	1868, 2219
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	1366
EcoT14I	CCWWGG	3 cut(s)	549, 832, 1441
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	3 cut(s)	357, 2100, 2274
ErhI	CCWWGG	3 cut(s)	549, 832, 1441
FaeI	CATG	4 cut(s)	332, 1445, 2269, 2356
FalI	AAGNNNNNCTT	2 cut(s)	2011, 2043
FaqI	GGGAC	3 cut(s)	1252, 1421, 1544
FatI	CATG	4 cut(s)	328, 1441, 2265, 2352
FauNDI	CATATG	3 cut(s)	958, 1537, 1976
FbaI	TGATCA	1 cut(s)	642
FblI	GTMKAC	2 cut(s)	468, 653
Fnu4HI	GCNGC	4 cut(s)	381, 577, 1948, 2241
FokI	GGATG	2 cut(s)	815, 1407
FriOI	GRGCYC	3 cut(s)	357, 2100, 2274
Fsp4HI	GCNGC	4 cut(s)	381, 577, 1948, 2241
GlaI	GCGC	3 cut(s)	575, 723, 1844
GluI	GCNGC	4 cut(s)	381, 577, 1948, 2241
GsuI	CTGGAG	3 cut(s)	1275, 1729, 1990
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 1870, 2207
HapII	CCGG	3 cut(s)	1155, 1335, 2189
HhaI	GCGC	3 cut(s)	576, 724, 1845
Hin1II	CATG	4 cut(s)	332, 1445, 2269, 2356
Hin6I	GCGC	3 cut(s)	574, 722, 1843
HinP1I	GCGC	3 cut(s)	574, 722, 1843
HincII	GTYRAC	1 cut(s)	1147
HindII	GTYRAC	1 cut(s)	1147
HindIII	AAGCTT	3 cut(s)	264, 2020, 2130
HpaI	GTTAAC	1 cut(s)	1147
HpaII	CCGG	3 cut(s)	1155, 1335, 2189
HphI	GGTGA	3 cut(s)	566, 2049, 2257
Hpy166II	GTNNAC	8 cut(s)	59, 114, 469, 481, 654, 858, 1147, 2319
Hpy188I	TCNGA	6 cut(s)	254, 453, 632, 675, 1515, 1764
Hpy188III	TCNNGA	5 cut(s)	894, 1088, 1292, 1426, 2312
Hpy8I	GTNNAC	8 cut(s)	59, 114, 469, 481, 654, 858, 1147, 2319
Hpy99I	CGWCG	1 cut(s)	2147
HpyAV	CCTTC	3 cut(s)	810, 1610, 2197
HpyCH4III	ACNGT	5 cut(s)	292, 1350, 1355, 1825, 2041
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 361
HpyF3I	CTNAG	5 cut(s)	316, 1380, 1424, 1763, 2094
Hsp92II	CATG	4 cut(s)	332, 1445, 2269, 2356
HspAI	GCGC	3 cut(s)	574, 722, 1843
Ksp22I	TGATCA	1 cut(s)	642
KspAI	GTTAAC	1 cut(s)	1147
Kzo9I	GATC	7 cut(s)	442, 627, 642, 675, 796, 1359, 2031
LguI	GCTCTTC	1 cut(s)	2279
Lsp1109I	GCAGC	4 cut(s)	392, 563, 1959, 2227
LweI	GCATC	3 cut(s)	1081, 1171, 1302
MaeIII	GTNAC	7 cut(s)	73, 242, 1493, 1530, 1792, 1888, 2083
MalI	GATC	7 cut(s)	444, 629, 644, 677, 798, 1361, 2033
MboI	GATC	7 cut(s)	442, 627, 642, 675, 796, 1359, 2031
MfeI	CAATTG	2 cut(s)	1121, 1893
MhlI	GDGCHC	3 cut(s)	357, 2100, 2274
MlsI	TGGCCA	1 cut(s)	296
MluI	ACGCGT	1 cut(s)	969
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	6 cut(s)	54, 598, 1443, 1620, 1712, 1736
MmeI	TCCRAC	1 cut(s)	1353
Mox20I	TGGCCA	1 cut(s)	296
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	1103
MscI	TGGCCA	1 cut(s)	296
MslI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	3 cut(s)	1155, 1335, 2189
MspR9I	CCNGG	1 cut(s)	1368
MunI	CAATTG	2 cut(s)	1121, 1893
Mva1269I	GAATGC	1 cut(s)	1522
MvaI	CCWGG	1 cut(s)	1368
MvnI	CGCG	3 cut(s)	436, 971, 1392
MwoI	GCNNNNNNNGC	2 cut(s)	149, 361
NcoI	CCATGG	1 cut(s)	1441
NdeI	CATATG	3 cut(s)	958, 1537, 1976
NdeII	GATC	7 cut(s)	442, 627, 642, 675, 796, 1359, 2031
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	4 cut(s)	332, 1445, 2269, 2356
NlaIV	GGNNCC	4 cut(s)	307, 1327, 1869, 2119
NmuCI	GTSAC	4 cut(s)	73, 242, 1888, 2083
NsiI	ATGCAT	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	2219
PceI	AGGCCT	1 cut(s)	2207
PciSI	GCTCTTC	1 cut(s)	2279
PcsI	WCGNNNNNNNCGW	1 cut(s)	433
PctI	GAATGC	1 cut(s)	1522
PdmI	GAANNNNTTC	1 cut(s)	1103
PfeI	GAWTC	8 cut(s)	122, 255, 662, 670, 866, 977, 1007, 1084
PflMI	CCANNNNNTGG	1 cut(s)	1752
PkrI	GCNGC	4 cut(s)	382, 578, 1949, 2242
PleI	GAGTC	6 cut(s)	54, 598, 1442, 1619, 1711, 1736
PpsI	GAGTC	6 cut(s)	54, 598, 1442, 1619, 1711, 1736
PpuMI	RGGWCCY	1 cut(s)	2219
PshBI	ATTAAT	1 cut(s)	1994
Psp124BI	GAGCTC	2 cut(s)	357, 2274
Psp5II	RGGWCCY	1 cut(s)	2219
Psp6I	CCWGG	1 cut(s)	1366
PspGI	CCWGG	1 cut(s)	1366
PspN4I	GGNNCC	4 cut(s)	307, 1327, 1869, 2119
PspPI	GGNCC	4 cut(s)	305, 1166, 1868, 2219
PspPPI	RGGWCCY	1 cut(s)	2219
PstNI	CAGNNNCTG	1 cut(s)	2093
RsaI	GTAC	4 cut(s)	711, 857, 1339, 1352
RsaNI	GTAC	4 cut(s)	710, 856, 1338, 1351
RseI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
SacI	GAGCTC	2 cut(s)	357, 2274
SapI	GCTCTTC	1 cut(s)	2279
SatI	GCNGC	4 cut(s)	381, 577, 1948, 2241
Sau3AI	GATC	7 cut(s)	442, 627, 642, 675, 796, 1359, 2031
Sau96I	GGNCC	4 cut(s)	305, 1166, 1868, 2219
ScaI	AGTACT	1 cut(s)	711
SchI	GAGTC	6 cut(s)	54, 598, 1443, 1620, 1712, 1736
ScrFI	CCNGG	1 cut(s)	1368
SduI	GDGCHC	3 cut(s)	357, 2100, 2274
SfaNI	GCATC	3 cut(s)	1081, 1171, 1302
SfcI	CTRYAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	1 cut(s)	2219
SmiMI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
SmlI	CTYRAG	1 cut(s)	996
SmoI	CTYRAG	1 cut(s)	996
SpeI	ACTAGT	2 cut(s)	53, 692
SseBI	AGGCCT	1 cut(s)	2207
SsiI	CCGC	3 cut(s)	164, 1392, 2243
SspI	AATATT	1 cut(s)	1033
SstI	GAGCTC	2 cut(s)	357, 2274
StuI	AGGCCT	1 cut(s)	2207
StyD4I	CCNGG	1 cut(s)	1366
StyI	CCWWGG	3 cut(s)	549, 832, 1441
TaaI	ACNGT	5 cut(s)	292, 1350, 1355, 1825, 2041
TaqI	TCGA	9 cut(s)	107, 120, 239, 427, 893, 1005, 1913, 2030, 2287
TatI	WGTACW	3 cut(s)	709, 855, 1350
TfiI	GAWTC	8 cut(s)	122, 255, 662, 670, 866, 977, 1007, 1084
TseFI	GTSAC	4 cut(s)	73, 242, 1888, 2083
TseI	GCWGC	4 cut(s)	380, 576, 1947, 2240
Tsp45I	GTSAC	4 cut(s)	73, 242, 1888, 2083
TspDTI	ATGAA	4 cut(s)	17, 576, 1322, 2341
Van91I	CCANNNNNTGG	1 cut(s)	1752
VpaK11BI	GGWCC	1 cut(s)	2219
VspI	ATTAAT	1 cut(s)	1994
XagI	CCTNNNNNAGG	2 cut(s)	2064, 2226
XapI	RAATTY	2 cut(s)	884, 1054
XmiI	GTMKAC	2 cut(s)	468, 653
XmnI	GAANNNNTTC	1 cut(s)	1103
ZrmI	AGTACT	1 cut(s)	711
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.