Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

43004447 .. 43006199

Gene Structure 1753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCATAACACCAAATCGAGTGACTTCCTCGGAATCGTGGAAGCTTTGCAGTTTATGGAGAATGACACGGTGGCCATAATTGGCCCCCAATTCTCAGCTACAGCTCATGTTATCTCACACATAGCAAATGAGCTCCAAGTGCCTTTGTTATCATTTGCAGCAACAGACCCTACTTTATCTCTATACGATCCTTCTCTCTCTCTAGTGCAAACAAACAACATCCAAGGTGTTCTCACATTACGAATGTACACACCTAATTCACAACCGAAGACCGAATTCAAGTCGAGATGGAGCAACTTGACTAGGGCAAGAAGATTACTTAATAACACTTCTTTTGGGTTAAATACATATGGCCTATACGCATATGATTCGGTGTTGCTTCTTGCTGAAGCAATCGAATCATTTTTCGCTATTGGTTGGAATATTTCCTTTTCAAATGACACAAATTTGAGGGAGTTAAGTGGTGGGAAGTTGAATCTTGATGCTTTGAACATTTTCAATGGAGGCAAGCAATTGCTCAAAAGCATTTTAGAGGTTAACACAAGCGGCTTAACAGGGCCAATTAAGTTTGATGCAGATGGGAACTTACCGAATCCTACATTTGAAGTCATCAATGTGATTGGCACAGGGACTAGAACTATTGGCTATTGGTCTAACTCCTCGGGTTTAAATGTTCTTCCTCCGGAAAAGCTCCAAATGAAGATGCGGACTAATGGCTCCAGCGCGCGGTACTCAAAAGCGTACGGTGTGATGCGGCTGGACAAACAACCGAGAAGCCTCGAGGATGGGTTTTCCCTTACAATGGCGAAAGCTCGGGATTGGAGTCCCCCATCGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

279

Amino Acids

30.67

Weight (kDa)

7.89

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 61	2.8e-13	Receptor family ligand binding region
ANF_receptor	PF01094	71 - 208	1.1e-20	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	779
AccII	CGCG	2 cut(s)	725, 727
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	4 cut(s)	546, 706, 727, 754
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	275, 445
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	3 cut(s)	248, 731, 743
AfiI	CCNNNNNNNGG	2 cut(s)	726, 802
AgsI	TTSAA	6 cut(s)	280, 435, 475, 490, 499, 605
AluBI	AGCT	6 cut(s)	44, 98, 104, 133, 691, 812
AluI	AGCT	6 cut(s)	44, 98, 104, 133, 691, 812
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	3 cut(s)	661, 779, 813
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	4 cut(s)	72, 82, 352, 557
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	275, 445
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	2 cut(s)	725, 727
AspS9I	GGNCC	2 cut(s)	83, 557
AvaI	CYCGRG	3 cut(s)	661, 779, 813
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	4 cut(s)	282, 572, 779, 838
BcgI	CGANNNNNNTGC	2 cut(s)	351, 385
BfaI	CTAG	3 cut(s)	203, 303, 633
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	3 cut(s)	159, 547, 755
BlsI	GCNGC	3 cut(s)	160, 548, 756
BmeT110I	CYCGRG	3 cut(s)	661, 779, 813
BmgT120I	GGNCC	2 cut(s)	83, 557
BmiI	GGNNCC	2 cut(s)	85, 718
BmsI	GCATC	4 cut(s)	472, 562, 693, 741
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	703
BsaJI	CCNNGG	3 cut(s)	28, 223, 660
BsaWI	WCCGGW	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	2 cut(s)	726, 802
BseAI	TCCGGA	1 cut(s)	682
BseDI	CCNNGG	3 cut(s)	28, 223, 660
BseGI	GGATG	2 cut(s)	219, 790
BseLI	CCNNNNNNNGG	2 cut(s)	726, 802
BseMII	CTCAG	1 cut(s)	108
BsePI	GCGCGC	1 cut(s)	723
BseRI	GAGGAG	1 cut(s)	649
BseXI	GCAGC	1 cut(s)	170
Bsh1236I	CGCG	2 cut(s)	725, 727
BshFI	GGCC	4 cut(s)	74, 84, 354, 559
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	3 cut(s)	661, 779, 813
BsiSI	CCGG	1 cut(s)	683
BsiWI	CGTACG	1 cut(s)	741
BslFI	GGGAC	2 cut(s)	643, 810
BslI	CCNNNNNNNGG	2 cut(s)	726, 802
BsmFI	GGGAC	2 cut(s)	643, 810
BsnI	GGCC	4 cut(s)	74, 84, 354, 559
BsoBI	CYCGRG	3 cut(s)	661, 779, 813
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp13I	TCCGGA	1 cut(s)	682
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	4 cut(s)	546, 706, 727, 754
BspANI	GGCC	4 cut(s)	74, 84, 354, 559
BspCNI	CTCAG	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	682
BspFNI	CGCG	2 cut(s)	725, 727
BspLI	GGNNCC	2 cut(s)	85, 718
BspPI	GGATC	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	28, 223, 660
BssHII	GCGCGC	1 cut(s)	723
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	70, 746
BstAUI	TGTACA	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	509, 725
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	219, 790
BstFNI	CGCG	2 cut(s)	725, 727
BstHHI	GCGC	2 cut(s)	725, 727
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	2 cut(s)	725, 727
BstV1I	GCAGC	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	4 cut(s)	74, 84, 354, 559
BtsCI	GGATG	2 cut(s)	219, 790
Cac8I	GCNNGC	2 cut(s)	509, 725
CfoI	GCGC	2 cut(s)	725, 727
Cfr13I	GGNCC	2 cut(s)	83, 557
Csp6I	GTAC	3 cut(s)	247, 730, 742
CviAII	CATG	1 cut(s)	107
CviQI	GTAC	3 cut(s)	247, 730, 742
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DraI	TTTAAA	1 cut(s)	669
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	408
Eco88I	CYCGRG	3 cut(s)	661, 779, 813
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	110
FaqI	GGGAC	2 cut(s)	643, 810
FatI	CATG	1 cut(s)	106
FauNDI	CATATG	2 cut(s)	349, 364
Fnu4HI	GCNGC	3 cut(s)	159, 547, 755
FokI	GGATG	2 cut(s)	206, 797
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	159, 547, 755
FspBI	CTAG	3 cut(s)	203, 303, 633
GlaI	GCGC	2 cut(s)	724, 726
GluI	GCNGC	3 cut(s)	159, 547, 755
GsuI	CTGGAG	1 cut(s)	703
HaeIII	GGCC	4 cut(s)	74, 84, 354, 559
HapII	CCGG	1 cut(s)	683
HhaI	GCGC	2 cut(s)	725, 727
Hin1II	CATG	1 cut(s)	110
Hin6I	GCGC	2 cut(s)	723, 725
HinP1I	GCGC	2 cut(s)	723, 725
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	6 cut(s)	33, 368, 398, 475, 592, 823
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	1 cut(s)	683
Hpy166II	GTNNAC	2 cut(s)	249, 538
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	4 cut(s)	285, 479, 683, 815
Hpy8I	GTNNAC	2 cut(s)	249, 538
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	2 cut(s)	70, 746
HpyCH4V	TGCA	5 cut(s)	4, 49, 158, 208, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	110
HspAI	GCGC	2 cut(s)	723, 725
Kpn2I	TCCGGA	1 cut(s)	682
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	4 cut(s)	138, 291, 696, 722
LpnPI	CCDG	5 cut(s)	540, 612, 696, 733, 743
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	4 cut(s)	472, 562, 693, 741
MaeI	CTAG	3 cut(s)	203, 303, 633
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	4 cut(s)	280, 324, 668, 712
MfeI	CAATTG	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	7 cut(s)	78, 89, 256, 275, 445, 512, 561
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	8 cut(s)	38, 444, 497, 526, 670, 690, 775, 788
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	7 cut(s)	321, 341, 458, 537, 551, 564, 668
MslI	CAYNNNNRTG	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	1 cut(s)	683
MunI	CAATTG	1 cut(s)	512
MvnI	CGCG	2 cut(s)	725, 727
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeI	CATATG	2 cut(s)	349, 364
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	85, 718
NmuCI	GTSAC	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	779
PauI	GCGCGC	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	5 cut(s)	33, 368, 398, 475, 592
Pfl23II	CGTACG	1 cut(s)	741
PkrI	GCNGC	3 cut(s)	160, 548, 756
PleI	GAGTC	1 cut(s)	831
PpsI	GAGTC	1 cut(s)	831
Psp124BI	GAGCTC	1 cut(s)	135
PspLI	CGTACG	1 cut(s)	741
PspN4I	GGNNCC	2 cut(s)	85, 718
PspPI	GGNCC	2 cut(s)	83, 557
PspXI	VCTCGAGB	1 cut(s)	779
PteI	GCGCGC	1 cut(s)	723
RsaI	GTAC	3 cut(s)	248, 731, 743
RsaNI	GTAC	3 cut(s)	247, 730, 742
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	7 cut(s)	321, 341, 458, 537, 551, 564, 668
SatI	GCNGC	3 cut(s)	159, 547, 755
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	2 cut(s)	83, 557
SchI	GAGTC	1 cut(s)	832
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	9 cut(s)	46, 100, 106, 135, 229, 256, 537, 693, 814
SfaNI	GCATC	4 cut(s)	472, 562, 693, 741
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	779
SlaI	CTCGAG	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	7 cut(s)	78, 89, 256, 275, 445, 512, 561
SsiI	CCGC	4 cut(s)	546, 706, 727, 754
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	3 cut(s)	203, 303, 633
SstI	GAGCTC	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	70, 746
TaqI	TCGA	5 cut(s)	17, 284, 396, 780, 833
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	7 cut(s)	78, 89, 256, 275, 445, 512, 561
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	2 cut(s)	549, 757
TfiI	GAWTC	5 cut(s)	33, 368, 398, 475, 592
Tru1I	TTAA	7 cut(s)	321, 341, 458, 537, 551, 564, 668
Tru9I	TTAA	7 cut(s)	321, 341, 458, 537, 551, 564, 668
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	713
XapI	RAATTY	2 cut(s)	275, 445
XhoI	CTCGAG	1 cut(s)	779
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	3 cut(s)	203, 303, 633
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.