Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

10092809 .. 10097709

Gene Structure 4901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG114600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1941 bp

ATGAATATAGCCTTGCTTCTGCTTTTTTTGGTTTTCTGTAAGGGTTCTCATACTAGTGGACTCATTACTAATGTCACTACAAGACCTGATGTATTGAACATTGGTTCGATGTTCACTTTCGATTCTGTCATTGGGAAAATTGCAAAACTTGCCATAACACTTGCGGTTGAAGATGTCAATTCCAATCCCAACATTCTCAAGGGCACAAAGCTCTCACTTAAAATGCATAACACCAAATCGAGTGACTTCCTCGGAATCGTTGAAGCTTTGCAGTTTATGGAGAATGACACAGTGGCCATAATTGGCCCCCAATTCTCAGCTACAGCTCATGTTATCTCACACATAGCAAATGAGCTCCAAGTGCCTTTGTTATCGTTTGCAGCAACAGACCCTACTCTATCTCCTGTTCAGTTCCCTTTCTTTGTTCGAACAACACGAAGCGATCTCTTTCAGATGACAGCAGTGGTAGACCTTGTTGTTCACTACGAGTGGAGAGATGTCATAGGAATATATGTAGATGACGATTTTGGAAGAAATGCTATTGCTTCCTTGGGTGATAAGCTAGCCGAAAAGCGCTGCAAGATTTCATACAAAGTGCCTTTGACTCCCACAGCAACAAAAGATGAGATCAGAAAGGCACTGATCAGTGTGTCTACAATGGAGTCTAGGATTCTGATCCTGCACATTTATACTAGTTGGGGTCTGCAAGTACTTGAAGAAGCGCAGGAGCAGAAGATGATGGATAGTGGATATGTGTGGATTGCTACTGATTGGTTCTCCACCATTTTAGATACAGATCCTTCTCTCCCTCTAGTGCAAACAAACAACATCCAAGGCGTTCTCACATTGCGAATGTACACACCCGATTCACAACTCAAGATGGAATTCAAGTCGAGATGGAGCAACTTGACTAAGGCAAGAAGATTACTTAATGACACTTCTTTTGGTTTAAATACATATGGCCTATACGCGTATGATTCGGTGTTGCTTCTTGCTCAAGCAATTGAATCATTTTTCGCTAATGGGTGGAACATTTCCTTTTCAAATGACACAAATTTGAGGGAGTTAAGTGGTGGGAAGTTGAATCTTGATGCTTTGAACATTTTCAATGGAGGCAGGCAATTGCTCAAAAGCATTTTAGAGGTTAACACAACTGGCTTAACAGGACCGATTAAGTTTGATGCAGATGGGAACTTACTCAATCCTGCATTTGAAGTCATCAATGTGATTGGCACAGGGACTAGAACTATTGGCTATTGGTCTAACTCCTCGGGCTTAAATGTTCTTCCTCCAGAAAAGCTCCAAATGAAGATGCAGACTAATGGCTCCAGCCCCGGTGCTCAAAATCTGTACAGTGTGATCTGGCCTGGACAAACAACTGAGAAGCCTCGCGGATGGGTTTTCCCTTACAATGGCAGAAAGCTCAAGATTGGAGTCCCTCGTCGAGTCAGCTACCGCGAGTTTGTGGGTATACAAGGCACTGATTTCACTGGTTACTGCATTGAGGTCTTTCAAGCTGCACTAAATGAGTTACCATATGGCGTACCATACAAGTATGTCCCTTTTGGAGATGGTATCAAAAACCCAGGAAACAATGACCTTCTGCACAGAATCCAAATTGGGGAGTTTGATGGTGTAGTAGGAGATATTACAATCACTACTAACAGAACAAAGATGGTGGATTTTACTCAACCTTATATTGAGTCTGGGCTAGTTGTGGTTGCTCCAATAAGGAAGATGAACTCAAGTGCTTGGGCTTTTCTGAGACCCTTTACTCCAATGATGTGGGGTGTTACTGGTGTTTTCTTCCTAGTTGTGGGAGCAGTTATTTGGATTTTGGAGCGCAGGACTAATGAGGATTTTAGGGGGCATCCAAGAAGACAATTTGTGACAATTGTTTGGTTTAGCTTTTCAACTTTGTTCTTCTCCCAGAGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

646

Amino Acids

72.16

Weight (kDa)

8.18

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	45 - 337	3.8e-13	Periplasmic binding protein
ANF_receptor	PF01094	49 - 411	1.1e-90	Receptor family ligand binding region
SBP_bac_3	PF00497	492 - 575	4.7e-07	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	494 - 575	7.8e-08	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	595 - 643	1.2e-07	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	468, 653, 1471
AccII	CGCG	3 cut(s)	971, 1392, 1458
AciI	CCGC	3 cut(s)	164, 1392, 1456
AclWI	GGATC	2 cut(s)	670, 791
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	884, 1054
AfaI	GTAC	4 cut(s)	711, 857, 1352, 1545
AfeI	AGCGCT	1 cut(s)	575
AfiI	CCNNNNNNNGG	3 cut(s)	1412, 1621, 1816
AflIII	ACRYGT	1 cut(s)	969
AhlI	ACTAGT	2 cut(s)	53, 692
AjnI	CCWGG	2 cut(s)	1366, 1585
Alw21I	GWGCWC	2 cut(s)	357, 1342
Alw26I	GTCTC	1 cut(s)	1759
AlwI	GGATC	2 cut(s)	670, 791
Ama87I	CYCGRG	1 cut(s)	1270
Aor51HI	AGCGCT	1 cut(s)	575
AoxI	GGCC	4 cut(s)	294, 304, 961, 1364
ApeKI	GCWGC	3 cut(s)	380, 576, 1517
ApoI	RAATTY	2 cut(s)	884, 1054
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
Asp700I	GAANNNNTTC	1 cut(s)	1103
AspLEI	GCGC	3 cut(s)	576, 724, 1845
AspS9I	GGNCC	2 cut(s)	305, 1166
AsuC2I	CCSGG	1 cut(s)	1335
AsuHPI	GGTGA	1 cut(s)	566
AsuII	TTCGAA	1 cut(s)	427
AsuNHI	GCTAGC	1 cut(s)	562
AvaI	CYCGRG	1 cut(s)	1270
AvaII	GGWCC	1 cut(s)	1166
BaeGI	GKGCMC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	1885
Bbv12I	GWGCWC	2 cut(s)	357, 1342
BbvI	GCAGC	3 cut(s)	392, 563, 1504
BccI	CCATC	8 cut(s)	733, 874, 891, 1181, 1389, 1565, 1625, 1669
BciT130I	CCWGG	2 cut(s)	1368, 1587
BclI	TGATCA	1 cut(s)	642
BcnI	CCSGG	1 cut(s)	1335
BcoDI	GTCTC	1 cut(s)	1759
BcuI	ACTAGT	2 cut(s)	53, 692
BfaI	CTAG	8 cut(s)	54, 563, 666, 693, 812, 1242, 1712, 1811
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	577
BisI	GCNGC	3 cut(s)	381, 577, 1518
BlsI	GCNGC	3 cut(s)	382, 578, 1519
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	3 cut(s)	1335, 1368, 1587
Bme18I	GGWCC	1 cut(s)	1166
BmeT110I	CYCGRG	1 cut(s)	1270
BmgT120I	GGNCC	2 cut(s)	305, 1166
BmiI	GGNNCC	2 cut(s)	307, 1327
BmrFI	CCNGG	3 cut(s)	1335, 1368, 1587
BmsI	GCATC	4 cut(s)	1081, 1171, 1302, 1879
BmtI	GCTAGC	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	1885
BpmI	CTGGAG	2 cut(s)	1275, 1312
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	5 cut(s)	182, 860, 981, 1409, 1729
BpuMI	CCSGG	1 cut(s)	1335
BsaBI	GATNNNNATC	2 cut(s)	674, 795
BsaI	GGTCTC	1 cut(s)	1759
BsaJI	CCNNGG	6 cut(s)	250, 549, 832, 1269, 1333, 1585
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	1412, 1621, 1816
Bse1I	ACTGG	3 cut(s)	1159, 1495, 1801
Bse3DI	GCAATG	1 cut(s)	845
Bse8I	GATNNNNATC	2 cut(s)	674, 795
BseBI	CCWGG	2 cut(s)	1368, 1587
BseDI	CCNNGG	6 cut(s)	250, 549, 832, 1269, 1333, 1585
BseGI	GGATG	3 cut(s)	828, 1400, 1870
BseJI	GATNNNNATC	2 cut(s)	674, 795
BseLI	CCNNNNNNNGG	3 cut(s)	1412, 1621, 1816
BseMI	GCAATG	1 cut(s)	845
BseMII	CTCAG	3 cut(s)	330, 1371, 1754
BseNI	ACTGG	3 cut(s)	1159, 1495, 1801
BseRI	GAGGAG	1 cut(s)	1258
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	392, 563, 1504
BsgI	GTGCAG	3 cut(s)	665, 1503, 1589
Bsh1236I	CGCG	3 cut(s)	971, 1392, 1458
BshFI	GGCC	4 cut(s)	296, 306, 963, 1366
BsiHKAI	GWGCWC	2 cut(s)	357, 1342
BsiHKCI	CYCGRG	1 cut(s)	1270
BsiSI	CCGG	1 cut(s)	1335
BslFI	GGGAC	3 cut(s)	1252, 1421, 1544
BslI	CCNNNNNNNGG	3 cut(s)	1412, 1621, 1816
BsmAI	GTCTC	1 cut(s)	1759
BsmFI	GGGAC	3 cut(s)	1252, 1421, 1544
BsnI	GGCC	4 cut(s)	296, 306, 963, 1366
Bso31I	GGTCTC	1 cut(s)	1759
BsoBI	CYCGRG	1 cut(s)	1270
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	3 cut(s)	206, 357, 1342
Bsp1407I	TGTACA	2 cut(s)	855, 1350
Bsp143I	GATC	6 cut(s)	442, 627, 642, 675, 796, 1359
BspACI	CCGC	3 cut(s)	164, 1392, 1456
BspANI	GGCC	4 cut(s)	296, 306, 963, 1366
BspCNI	CTCAG	3 cut(s)	329, 1372, 1755
BspFNI	CGCG	3 cut(s)	971, 1392, 1458
BspLI	GGNNCC	2 cut(s)	307, 1327
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	2 cut(s)	670, 791
BspT104I	TTCGAA	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	1759
BsrDI	GCAATG	1 cut(s)	845
BsrGI	TGTACA	2 cut(s)	855, 1350
BsrI	ACTGG	3 cut(s)	1159, 1495, 1801
BssECI	CCNNGG	6 cut(s)	250, 549, 832, 1269, 1333, 1585
BssMI	GATC	6 cut(s)	442, 627, 642, 675, 796, 1359
BssNAI	GTATAC	1 cut(s)	1472
BssT1I	CCWWGG	2 cut(s)	549, 832
Bst1107I	GTATAC	1 cut(s)	1472
Bst2UI	CCWGG	2 cut(s)	1368, 1587
Bst4CI	ACNGT	2 cut(s)	292, 1355
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstAUI	TGTACA	2 cut(s)	855, 1350
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	564, 1118
BstDEI	CTNAG	4 cut(s)	316, 912, 1380, 1763
BstF5I	GGATG	3 cut(s)	828, 1400, 1870
BstFNI	CGCG	3 cut(s)	971, 1392, 1458
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	3 cut(s)	576, 724, 1845
BstKTI	GATC	6 cut(s)	445, 630, 645, 678, 799, 1362
BstMAI	GTCTC	1 cut(s)	1759
BstMBI	GATC	6 cut(s)	442, 627, 642, 675, 796, 1359
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 361
BstNI	CCWGG	2 cut(s)	1368, 1587
BstSCI	CCNGG	3 cut(s)	1333, 1366, 1585
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	3 cut(s)	971, 1392, 1458
BstV1I	GCAGC	3 cut(s)	392, 563, 1504
BstV2I	GAAGAC	1 cut(s)	1885
BstX2I	RGATCY	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	1785
BstYI	RGATCY	1 cut(s)	796
BstZ17I	GTATAC	1 cut(s)	1472
BsuRI	GGCC	4 cut(s)	296, 306, 963, 1366
BtsCI	GGATG	3 cut(s)	828, 1400, 1870
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	7 cut(s)	297, 468, 638, 652, 1360, 1479, 1488
Cac8I	GCNNGC	2 cut(s)	564, 1118
CfoI	GCGC	3 cut(s)	576, 724, 1845
Cfr13I	GGNCC	2 cut(s)	305, 1166
Csp6I	GTAC	4 cut(s)	710, 856, 1351, 1544
CspCI	CAANNNNNGTGG	2 cut(s)	1659, 1694
CviAII	CATG	1 cut(s)	329
CviQI	GTAC	4 cut(s)	710, 856, 1351, 1544
DdeI	CTNAG	4 cut(s)	316, 912, 1380, 1763
DpnI	GATC	6 cut(s)	444, 629, 644, 677, 798, 1361
DpnII	GATC	6 cut(s)	442, 627, 642, 675, 796, 1359
DraI	TTTAAA	1 cut(s)	951
EaeI	YGGCCR	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	2 cut(s)	549, 832
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	1759
Eco47I	GGWCC	1 cut(s)	1166
Eco47III	AGCGCT	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	1270
EcoICRI	GAGCTC	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	1366, 1585
EcoT14I	CCWWGG	2 cut(s)	549, 832
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	2 cut(s)	549, 832
FaeI	CATG	1 cut(s)	332
FaqI	GGGAC	3 cut(s)	1252, 1421, 1544
FatI	CATG	1 cut(s)	328
FauNDI	CATATG	2 cut(s)	958, 1537
FbaI	TGATCA	1 cut(s)	642
FblI	GTMKAC	3 cut(s)	468, 653, 1471
Fnu4HI	GCNGC	3 cut(s)	381, 577, 1518
FokI	GGATG	3 cut(s)	815, 1407, 1857
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	381, 577, 1518
FspBI	CTAG	8 cut(s)	54, 563, 666, 693, 812, 1242, 1712, 1811
GlaI	GCGC	3 cut(s)	575, 723, 1844
GluI	GCNGC	3 cut(s)	381, 577, 1518
GsuI	CTGGAG	2 cut(s)	1275, 1312
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	4 cut(s)	296, 306, 963, 1366
HapII	CCGG	1 cut(s)	1335
HhaI	GCGC	3 cut(s)	576, 724, 1845
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	3 cut(s)	574, 722, 1843
HinP1I	GCGC	3 cut(s)	574, 722, 1843
HincII	GTYRAC	1 cut(s)	1147
HindII	GTYRAC	1 cut(s)	1147
HindIII	AAGCTT	1 cut(s)	264
HpaI	GTTAAC	1 cut(s)	1147
HpaII	CCGG	1 cut(s)	1335
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	8 cut(s)	59, 114, 469, 481, 654, 858, 1147, 1472
Hpy188I	TCNGA	5 cut(s)	254, 453, 632, 675, 1764
Hpy188III	TCNNGA	5 cut(s)	877, 894, 1088, 1292, 1426
Hpy8I	GTNNAC	8 cut(s)	59, 114, 469, 481, 654, 858, 1147, 1472
Hpy99I	CGWCG	1 cut(s)	1446
HpyAV	CCTTC	2 cut(s)	810, 1610
HpyCH4III	ACNGT	2 cut(s)	292, 1355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 361
HpyF3I	CTNAG	4 cut(s)	316, 912, 1380, 1763
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	3 cut(s)	574, 722, 1843
Ksp22I	TGATCA	1 cut(s)	642
KspAI	GTTAAC	1 cut(s)	1147
Kzo9I	GATC	6 cut(s)	442, 627, 642, 675, 796, 1359
LmnI	GCTCC	8 cut(s)	360, 727, 900, 1305, 1331, 1729, 1820, 1840
Lsp1109I	GCAGC	3 cut(s)	392, 563, 1504
LweI	GCATC	4 cut(s)	1081, 1171, 1302, 1879
MaeI	CTAG	8 cut(s)	54, 563, 666, 693, 812, 1242, 1712, 1811
MaeIII	GTNAC	6 cut(s)	73, 242, 1493, 1530, 1792, 1888
MalI	GATC	6 cut(s)	444, 629, 644, 677, 798, 1361
MboI	GATC	6 cut(s)	442, 627, 642, 675, 796, 1359
MfeI	CAATTG	3 cut(s)	1002, 1121, 1893
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	3 cut(s)	206, 357, 1342
MlsI	TGGCCA	1 cut(s)	296
MluI	ACGCGT	1 cut(s)	969
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	6 cut(s)	54, 598, 671, 1443, 1455, 1712
Mox20I	TGGCCA	1 cut(s)	296
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	1103
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	8 cut(s)	219, 930, 950, 1067, 1146, 1160, 1173, 1277
MslI	CAYNNNNRTG	2 cut(s)	54, 1223
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	1 cut(s)	1335
MspR9I	CCNGG	3 cut(s)	1335, 1368, 1587
MunI	CAATTG	3 cut(s)	1002, 1121, 1893
MvaI	CCWGG	2 cut(s)	1368, 1587
MvnI	CGCG	3 cut(s)	971, 1392, 1458
MwoI	GCNNNNNNNGC	2 cut(s)	149, 361
NciI	CCSGG	1 cut(s)	1335
NdeI	CATATG	2 cut(s)	958, 1537
NdeII	GATC	6 cut(s)	442, 627, 642, 675, 796, 1359
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	2 cut(s)	307, 1327
NmuCI	GTSAC	3 cut(s)	73, 242, 1888
NsiI	ATGCAT	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	1103
PfeI	GAWTC	8 cut(s)	122, 255, 670, 866, 977, 1007, 1084, 1611
PkrI	GCNGC	3 cut(s)	382, 578, 1519
PleI	GAGTC	6 cut(s)	54, 598, 670, 1442, 1454, 1711
PpsI	GAGTC	6 cut(s)	54, 598, 670, 1442, 1454, 1711
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	1366, 1585
PspGI	CCWGG	2 cut(s)	1366, 1585
PspN4I	GGNNCC	2 cut(s)	307, 1327
PspPI	GGNCC	2 cut(s)	305, 1166
PsuI	RGATCY	1 cut(s)	796
RsaI	GTAC	4 cut(s)	711, 857, 1352, 1545
RsaNI	GTAC	4 cut(s)	710, 856, 1351, 1544
RseI	CAYNNNNRTG	2 cut(s)	54, 1223
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	8 cut(s)	219, 930, 950, 1067, 1146, 1160, 1173, 1277
SatI	GCNGC	3 cut(s)	381, 577, 1518
Sau3AI	GATC	6 cut(s)	442, 627, 642, 675, 796, 1359
Sau96I	GGNCC	2 cut(s)	305, 1166
ScaI	AGTACT	1 cut(s)	711
SchI	GAGTC	6 cut(s)	54, 598, 671, 1443, 1455, 1712
ScrFI	CCNGG	3 cut(s)	1335, 1368, 1587
SduI	GDGCHC	3 cut(s)	206, 357, 1342
SfaNI	GCATC	4 cut(s)	1081, 1171, 1302, 1879
SfcI	CTRYAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	1 cut(s)	1166
SmiMI	CAYNNNNRTG	2 cut(s)	54, 1223
SmlI	CTYRAG	5 cut(s)	197, 875, 996, 1424, 1744
SmoI	CTYRAG	5 cut(s)	197, 875, 996, 1424, 1744
SpeI	ACTAGT	2 cut(s)	53, 692
SsiI	CCGC	3 cut(s)	164, 1392, 1456
SspMI	CTAG	8 cut(s)	54, 563, 666, 693, 812, 1242, 1712, 1811
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	3 cut(s)	1333, 1366, 1585
StyI	CCWWGG	2 cut(s)	549, 832
TaaI	ACNGT	2 cut(s)	292, 1355
TaqI	TCGA	6 cut(s)	107, 120, 239, 427, 893, 1444
TaqII	GACCGA	1 cut(s)	1183
TatI	WGTACW	3 cut(s)	709, 855, 1350
TfiI	GAWTC	8 cut(s)	122, 255, 670, 866, 977, 1007, 1084, 1611
Tru1I	TTAA	8 cut(s)	219, 930, 950, 1067, 1146, 1160, 1173, 1277
Tru9I	TTAA	8 cut(s)	219, 930, 950, 1067, 1146, 1160, 1173, 1277
TscAI	CASTG	7 cut(s)	297, 468, 645, 652, 1360, 1486, 1495
TseFI	GTSAC	3 cut(s)	73, 242, 1888
TseI	GCWGC	3 cut(s)	380, 576, 1517
Tsp45I	GTSAC	3 cut(s)	73, 242, 1888
TspDTI	ATGAA	4 cut(s)	17, 576, 1322, 1754
TspRI	CASTG	7 cut(s)	297, 468, 645, 652, 1360, 1486, 1495
VpaK11BI	GGWCC	1 cut(s)	1166
XapI	RAATTY	2 cut(s)	884, 1054
XmiI	GTMKAC	3 cut(s)	468, 653, 1471
XmnI	GAANNNNTTC	1 cut(s)	1103
XspI	CTAG	8 cut(s)	54, 563, 666, 693, 812, 1242, 1712, 1811
ZrmI	AGTACT	1 cut(s)	711
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.