Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

5558034 .. 5561235

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10192.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGAATATAGCTTTGCTTCTGCTTTTTTTGGTTTTCTGTAATAGTTCTCACTCTAGGGGACTCATTACTAATGTCACCACAAGACCTGAAGTATTGAACATTGGTTCGATATTCACTTTCGATTCCGTCATTGGCAAAATCGCAAAACTTGCAATATCAACTACAGTTGAAGATGTGAACTCCAATCCCAACATTCTCAATGGAACAAAGCTCTCACTCAAATTGCACAACACCAAATCGAGTGACTTCCTCGGAATTGTTGAAACTTTGCAGTTTATGGAGAATGACACAGTGGCCATAATTGGCCCTCAATTCTCAGCAACAGCTCATGTTATCACACACATAGCAAATGAGCTCCAAGTGCCTTTGCTATCATTTGCAGCAACTGATCCCACTCTATCTCCTGTTCAGTACCCTTTCTTTGTTCGAACAACGCGAAGCGATCTCTTCCAGATGACAGCAGTGGTAGACCTGGTTGTATACTACGAGTGGAGAGACGTCATAGCAATATATGTGGATGACGACTTTGGGAGAAATGCTATTGCTTCCTTGGGTGACAAGCTAGCCGAAAAGCGCTGCAAGATTTCATACAAAGTGCCTTTGACTCCCACAGCAACAAAAGATGAGATCAGAAAGGCACTGATCAGTGTGGCTGCAATGGAATCTAGGATTCTTATCCTGCACATTTATACTAGTTGGGGTCTGCAAGTGCTAGAAGAAGCGCATGAGCAGAAGATGATGGATAGTGGATATGTGTGGATTGCTACTGATTGGTTCTCCACCATTTTAGATACAGATCCTTCTCTCCCTCTAGTAGCAACTAACAACATCCAAGGCGTGCTCACATTGCGAATGTACACACCCGATTCACAACTCAAGATGGATTTCAAGTCGAGATGGAGCAACTTGACTAGGGCAAGAAGATTACTTAATGACACTTCTTTGGGGCTAAACACATATGGCCTGTATGCGTATGATTCAGTGTTGCTTCTTGCTCAAGCAATCGAATCATTTTTCTCTAATGGGGGCAACATTTCCTTTTCAAATGACACAAATTTGAGGGAATTAAGTGGTGGGAAGTTGAATCTTGATGCTTTGAACATTTTCAATGGAGGCAGGCAATTGCTCAAAAGCATTTCAGAAGTTAACATAACTGGCTTAACAGGGCTTATGAAGTTTGATGCAGATGGGAACTTGCTCAATCCTACATTTGAAGTCATCAATGTGATTGGCACAGGGACTAGAACTATCGGCTATTGGTCTAACTCCTCTGGTTTACATGTTCTTCCTCCAGAAAAGCTCCAAATGAATGTCCCCAGCGCCGGTGCTAAAAAACTGTACAGTGTGATCTGGCCTGGACAAACAACTCAGAAGCCTCGCGGATATATGGTGTACCATTCAAATATGTCTCTTTTGGAGATGGAATTTGATGGTATAGTAGGAGATATTACAATCACTACAAACAGAACAAAGATGGTGGATTTTACACAACCTTATATTGAGTCAGGGCTAGTTGTGGTTGCTCCAATAAGGAAGATGAATTCTAGTGCTTGGGCTTTTCTGAGACCTTTTAGTCCAATGATGTGGGGTGTTACTGGTGTGTTCTTCCTAGTTGTGGGAGCAGTTGTTTGGATTTTGGAGCGCAGGACTAATGAGGATTTCAGGGGGCCTCCAAGAAGGCAATTTGTCACAATTGTTTGGGGTTCCTTTGCTGAAGCTTACTTAACCGACGAGCTGAACATACATCACAGCAGACTCTTTCCCCTTAACTCGCCGGAAGACTATGAGAAGGCCTTGAAGAATGGTCCTAGTGCAGGTGGTGTTGCTGCAGTGATTGATGAGCGTGCTTACATGGAGCTCTTCCTCTCTAGTCGATGTGGATACAGTATTGTTGGTCAAGAGTTCACCAAAATTGGTTGGGGATTTGCCTTTCCAAGGGACTCGCCATTGGCAATCGACATGTCGACCGCAATATTGAAGCTATCGGAGAACGGAAACCTTCAAAAGATTCATGACAAATGGCTAATGAAAAGTGCTTGCAGTGCAGAAGGAGCAAAGCAGGCAGTAGACCGCCTTCAGCTGAAGAGCTTCTGGGGCCTCTTTCTACTAAGCGGCATTGCTTGCTTTCTTGCTCTTATTCTTCATGTTCTTCGCATGGTTCGACAGTACTACCGGCATGTAGATTCCGACATTGAGAGCTCGCAATCTACACGACGACTCAAGTCGTTTGTTTCATTTGTAAATAAGAGGGAACGAGAAGTGAAAAGCAGGTCCAAGAGAAGAAGGACAGAGAATAAAGCCTCAAGTAAGATAGTGCATGATCAAGAATGCAGCAGTAGTGATGGTTTGGAGCGGGAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

788

Amino Acids

88.04

Weight (kDa)

8.29

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	47 - 337	6.1e-11	Periplasmic binding protein
ANF_receptor	PF01094	49 - 411	1.1e-88	Receptor family ligand binding region
SBP_bac_3	PF00497	471 - 676	1.3e-09	Bacterial extracellular solute-binding proteins, family 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1805
AasI	GACNNNNNNGTC	1 cut(s)	1572
AatII	GACGTC	1 cut(s)	501
Acc36I	ACCTGC	2 cut(s)	1805, 2259
AccBSI	CCGCTC	1 cut(s)	2353
AccI	GTMKAC	4 cut(s)	468, 480, 1964, 2067
AccII	CGCG	2 cut(s)	436, 1380
AciI	CCGC	5 cut(s)	1380, 1968, 2071, 2112, 2353
AclWI	GGATC	2 cut(s)	383, 791
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	3 cut(s)	1054, 1424, 1540
AcuI	CTGAAG	4 cut(s)	108, 1734, 2060, 2102
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	5 cut(s)	413, 857, 1340, 1394, 2168
AfeI	AGCGCT	1 cut(s)	575
AfiI	CCNNNNNNNGG	4 cut(s)	1322, 1615, 1814, 1935
AflIII	ACRYGT	2 cut(s)	1279, 1959
AhlI	ACTAGT	1 cut(s)	692
AjnI	CCWGG	2 cut(s)	471, 1354
Alw21I	GWGCWC	4 cut(s)	357, 843, 1860, 2201
Alw26I	GTCTC	3 cut(s)	489, 1413, 1558
AlwI	GGATC	2 cut(s)	383, 791
AlwNI	CAGNNNCTG	1 cut(s)	386
Aor51HI	AGCGCT	1 cut(s)	575
AoxI	GGCC	7 cut(s)	294, 304, 961, 1352, 1667, 1791, 2095
ApeKI	GCWGC	5 cut(s)	380, 576, 653, 1826, 2331
ApoI	RAATTY	3 cut(s)	1054, 1424, 1540
Asp700I	GAANNNNTTC	2 cut(s)	1103, 2087
AspLEI	GCGC	4 cut(s)	576, 724, 1322, 1644
AspS9I	GGNCC	5 cut(s)	305, 1667, 1805, 2095, 2271
AsuHPI	GGTGA	3 cut(s)	67, 566, 1897
AsuII	TTCGAA	1 cut(s)	427
AsuNHI	GCTAGC	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	1805, 2271
BalI	TGGCCA	1 cut(s)	296
BanII	GRGCYC	3 cut(s)	357, 1860, 2201
BarI	GAAGNNNNNNTAC	2 cut(s)	2058, 2090
BbsI	GAAGAC	1 cut(s)	1785
Bbv12I	GWGCWC	4 cut(s)	357, 843, 1860, 2201
BbvI	GCAGC	5 cut(s)	392, 563, 640, 1813, 2343
BccI	CCATC	8 cut(s)	733, 874, 891, 1181, 1414, 1424, 1468, 2336
BciT130I	CCWGG	2 cut(s)	473, 1356
BciVI	GTATCC	1 cut(s)	1874
BclI	TGATCA	2 cut(s)	642, 2320
BcoDI	GTCTC	3 cut(s)	489, 1413, 1558
BcuI	ACTAGT	1 cut(s)	692
BfmI	CTRYAG	2 cut(s)	162, 1827
BfoI	RGCGCY	2 cut(s)	577, 1323
BfuAI	ACCTGC	2 cut(s)	1805, 2259
BfuI	GTATCC	1 cut(s)	1874
BisI	GCNGC	6 cut(s)	381, 577, 654, 1827, 2113, 2332
BlsI	GCNGC	6 cut(s)	382, 578, 655, 1828, 2114, 2333
BmcAI	AGTACT	1 cut(s)	2168
Bme1390I	CCNGG	2 cut(s)	473, 1356
Bme18I	GGWCC	2 cut(s)	1805, 2271
BmgT120I	GGNCC	5 cut(s)	305, 1667, 1805, 2095, 2271
BmiI	GGNNCC	3 cut(s)	1668, 1705, 2096
BmrFI	CCNGG	2 cut(s)	473, 1356
BmsI	GCATC	2 cut(s)	1081, 1171
BmtI	GCTAGC	1 cut(s)	566
BoxI	GACNNNNGTC	1 cut(s)	2221
BpiI	GAAGAC	1 cut(s)	1785
BpmI	CTGGAG	1 cut(s)	1275
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	4 cut(s)	860, 981, 2204, 2287
BsaBI	GATNNNNATC	2 cut(s)	674, 795
BsaHI	GRCGYC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	1558
BsaJI	CCNNGG	4 cut(s)	250, 549, 832, 1934
BsaXI	ACNNNNNCTCC	4 cut(s)	385, 415, 1611, 1641
Bsc4I	CCNNNNNNNGG	4 cut(s)	1322, 1615, 1814, 1935
Bse118I	RCCGGY	2 cut(s)	1322, 2172
Bse1I	ACTGG	2 cut(s)	1159, 1600
Bse3DI	GCAATG	3 cut(s)	663, 845, 2115
Bse8I	GATNNNNATC	2 cut(s)	674, 795
BseBI	CCWGG	2 cut(s)	473, 1356
BseDI	CCNNGG	4 cut(s)	250, 549, 832, 1934
BseGI	GGATG	2 cut(s)	523, 828
BseJI	GATNNNNATC	2 cut(s)	674, 795
BseLI	CCNNNNNNNGG	4 cut(s)	1322, 1615, 1814, 1935
BseMI	GCAATG	3 cut(s)	663, 845, 2115
BseMII	CTCAG	3 cut(s)	330, 1382, 1553
BseNI	ACTGG	2 cut(s)	1159, 1600
BseRI	GAGGAG	1 cut(s)	1258
BseXI	GCAGC	5 cut(s)	392, 563, 640, 1813, 2343
BseYI	CCCAGC	1 cut(s)	1316
BsgI	GTGCAG	3 cut(s)	665, 1833, 2064
Bsh1236I	CGCG	2 cut(s)	436, 1380
Bsh1285I	CGRYCG	1 cut(s)	1968
BshFI	GGCC	7 cut(s)	296, 306, 963, 1354, 1669, 1793, 2097
BsiEI	CGRYCG	1 cut(s)	1968
BsiHKAI	GWGCWC	4 cut(s)	357, 843, 1860, 2201
BsiSI	CCGG	3 cut(s)	1323, 1775, 2173
BslFI	GGGAC	4 cut(s)	72, 1252, 1298, 1952
BslI	CCNNNNNNNGG	4 cut(s)	1322, 1615, 1814, 1935
BsmAI	GTCTC	3 cut(s)	489, 1413, 1558
BsmBI	CGTCTC	1 cut(s)	489
BsmFI	GGGAC	4 cut(s)	72, 1252, 1298, 1952
BsmI	GAATGC	1 cut(s)	2333
BsnI	GGCC	7 cut(s)	296, 306, 963, 1354, 1669, 1793, 2097
Bso31I	GGTCTC	1 cut(s)	1558
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	4 cut(s)	357, 843, 1860, 2201
Bsp1407I	TGTACA	2 cut(s)	855, 1338
Bsp143I	GATC	7 cut(s)	388, 442, 627, 642, 796, 1347, 2320
BspACI	CCGC	5 cut(s)	1380, 1968, 2071, 2112, 2353
BspANI	GGCC	7 cut(s)	296, 306, 963, 1354, 1669, 1793, 2097
BspCNI	CTCAG	3 cut(s)	329, 1381, 1554
BspFNI	CGCG	2 cut(s)	436, 1380
BspHI	TCATGA	1 cut(s)	2011
BspLI	GGNNCC	3 cut(s)	1668, 1705, 2096
BspMAI	CTGCAG	1 cut(s)	1831
BspMI	ACCTGC	2 cut(s)	1805, 2259
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	2 cut(s)	383, 791
BspQI	GCTCTTC	2 cut(s)	1865, 2078
BspT104I	TTCGAA	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	1558
BsrBI	CCGCTC	1 cut(s)	2353
BsrDI	GCAATG	3 cut(s)	663, 845, 2115
BsrFI	RCCGGY	2 cut(s)	1322, 2172
BsrGI	TGTACA	2 cut(s)	855, 1338
BsrI	ACTGG	2 cut(s)	1159, 1600
BssAI	RCCGGY	2 cut(s)	1322, 2172
BssECI	CCNNGG	4 cut(s)	250, 549, 832, 1934
BssMI	GATC	7 cut(s)	388, 442, 627, 642, 796, 1347, 2320
BssNAI	GTATAC	1 cut(s)	481
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	3 cut(s)	549, 832, 1934
Bst1107I	GTATAC	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	473, 1356
Bst4CI	ACNGT	6 cut(s)	166, 292, 1338, 1343, 1886, 2166
Bst6I	CTCTTC	3 cut(s)	452, 1865, 2078
BstACI	GRCGYC	1 cut(s)	498
BstAPI	GCANNNNNTGC	2 cut(s)	149, 2121
BstAUI	TGTACA	2 cut(s)	855, 1338
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	8 cut(s)	564, 839, 1118, 1845, 2038, 2061, 2122, 2201
BstDEI	CTNAG	4 cut(s)	316, 1368, 1562, 2108
BstENI	CCTNNNNNAGG	2 cut(s)	1812, 1933
BstF5I	GGATG	2 cut(s)	523, 828
BstFNI	CGCG	2 cut(s)	436, 1380
BstH2I	RGCGCY	2 cut(s)	577, 1323
BstHHI	GCGC	4 cut(s)	576, 724, 1322, 1644
BstKTI	GATC	7 cut(s)	391, 445, 630, 645, 799, 1350, 2323
BstMAI	GTCTC	3 cut(s)	489, 1413, 1558
BstMBI	GATC	7 cut(s)	388, 442, 627, 642, 796, 1347, 2320
BstMCI	CGRYCG	1 cut(s)	1968
BstMWI	GCNNNNNNNGC	8 cut(s)	149, 361, 847, 2042, 2051, 2060, 2094, 2121
BstNI	CCWGG	2 cut(s)	473, 1356
BstNSI	RCATGY	3 cut(s)	1283, 1963, 2180
BstPAI	GACNNNNGTC	1 cut(s)	2221
BstSCI	CCNGG	2 cut(s)	471, 1354
BstSFI	CTRYAG	2 cut(s)	162, 1827
BstUI	CGCG	2 cut(s)	436, 1380
BstV1I	GCAGC	5 cut(s)	392, 563, 640, 1813, 2343
BstV2I	GAAGAC	1 cut(s)	1785
BstX2I	RGATCY	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	1584
BstYI	RGATCY	1 cut(s)	796
BstZ17I	GTATAC	1 cut(s)	481
BsuI	GTATCC	1 cut(s)	1874
BsuRI	GGCC	7 cut(s)	296, 306, 963, 1354, 1669, 1793, 2097
BtsCI	GGATG	2 cut(s)	523, 828
BtsI	GCAGTG	3 cut(s)	468, 1836, 2047
BtsIMutI	CAGTG	8 cut(s)	297, 468, 638, 652, 987, 1348, 1836, 2047
BveI	ACCTGC	2 cut(s)	1805, 2259
Cac8I	GCNNGC	8 cut(s)	564, 839, 1118, 1845, 2038, 2061, 2122, 2201
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	1 cut(s)	2011
CfoI	GCGC	4 cut(s)	576, 724, 1322, 1644
Cfr10I	RCCGGY	2 cut(s)	1322, 2172
Cfr13I	GGNCC	5 cut(s)	305, 1667, 1805, 2095, 2271
CsiI	ACCWGGT	1 cut(s)	471
Csp6I	GTAC	5 cut(s)	412, 856, 1339, 1393, 2167
CspCI	CAANNNNNGTGG	4 cut(s)	495, 530, 1458, 1493
CviQI	GTAC	5 cut(s)	412, 856, 1339, 1393, 2167
DdeI	CTNAG	4 cut(s)	316, 1368, 1562, 2108
DpnI	GATC	7 cut(s)	390, 444, 629, 644, 798, 1349, 2322
DpnII	GATC	7 cut(s)	388, 442, 627, 642, 796, 1347, 2320
DrdI	GACNNNNNNGTC	1 cut(s)	1572
DseDI	GACNNNNNNGTC	1 cut(s)	1572
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	3 cut(s)	452, 1865, 2078
EarI	CTCTTC	3 cut(s)	452, 1865, 2078
Ecl136II	GAGCTC	3 cut(s)	355, 1858, 2199
Eco130I	CCWWGG	3 cut(s)	549, 832, 1934
Eco147I	AGGCCT	1 cut(s)	1793
Eco24I	GRGCYC	3 cut(s)	357, 1860, 2201
Eco31I	GGTCTC	1 cut(s)	1558
Eco47I	GGWCC	2 cut(s)	1805, 2271
Eco47III	AGCGCT	1 cut(s)	575
Eco53kI	GAGCTC	3 cut(s)	355, 1858, 2199
Eco57I	CTGAAG	4 cut(s)	108, 1734, 2060, 2102
EcoICRI	GAGCTC	3 cut(s)	355, 1858, 2199
EcoNI	CCTNNNNNAGG	2 cut(s)	1812, 1933
EcoO109I	RGGNCCY	2 cut(s)	1667, 2095
EcoRI	GAATTC	1 cut(s)	1540
EcoRII	CCWGG	2 cut(s)	471, 1354
EcoT14I	CCWWGG	3 cut(s)	549, 832, 1934
EcoT38I	GRGCYC	3 cut(s)	357, 1860, 2201
ErhI	CCWWGG	3 cut(s)	549, 832, 1934
Esp3I	CGTCTC	1 cut(s)	489
FaqI	GGGAC	4 cut(s)	72, 1252, 1298, 1952
FauI	CCCGC	1 cut(s)	2346
FauNDI	CATATG	1 cut(s)	958
FbaI	TGATCA	2 cut(s)	642, 2320
FblI	GTMKAC	4 cut(s)	468, 480, 1964, 2067
Fnu4HI	GCNGC	6 cut(s)	381, 577, 654, 1827, 2113, 2332
FokI	GGATG	2 cut(s)	530, 815
FriOI	GRGCYC	3 cut(s)	357, 1860, 2201
Fsp4HI	GCNGC	6 cut(s)	381, 577, 654, 1827, 2113, 2332
GlaI	GCGC	4 cut(s)	575, 723, 1321, 1643
GluI	GCNGC	6 cut(s)	381, 577, 654, 1827, 2113, 2332
GsaI	CCCAGC	1 cut(s)	1320
GsuI	CTGGAG	1 cut(s)	1275
HaeII	RGCGCY	2 cut(s)	577, 1323
HaeIII	GGCC	7 cut(s)	296, 306, 963, 1354, 1669, 1793, 2097
HapII	CCGG	3 cut(s)	1323, 1775, 2173
HhaI	GCGC	4 cut(s)	576, 724, 1322, 1644
Hin1I	GRCGYC	1 cut(s)	498
Hin6I	GCGC	4 cut(s)	574, 722, 1320, 1642
HinP1I	GCGC	4 cut(s)	574, 722, 1320, 1642
HincII	GTYRAC	2 cut(s)	1147, 1965
HindII	GTYRAC	2 cut(s)	1147, 1965
HindIII	AAGCTT	1 cut(s)	1716
HpaI	GTTAAC	1 cut(s)	1147
HpaII	CCGG	3 cut(s)	1323, 1775, 2173
HphI	GGTGA	3 cut(s)	67, 566, 1897
Hpy188I	TCNGA	7 cut(s)	254, 632, 1141, 1371, 1563, 1987, 2188
Hpy188III	TCNNGA	8 cut(s)	451, 877, 894, 1088, 1292, 1898, 2012, 2324
Hpy99I	CGWCG	2 cut(s)	1733, 2217
HpyAV	CCTTC	7 cut(s)	810, 1671, 1783, 2009, 2042, 2084, 2277
HpyCH4III	ACNGT	6 cut(s)	166, 292, 1338, 1343, 1886, 2166
HpyCH4IV	ACGT	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	8 cut(s)	149, 361, 847, 2042, 2051, 2060, 2094, 2121
HpyF3I	CTNAG	4 cut(s)	316, 1368, 1562, 2108
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	1 cut(s)	498
HspAI	GCGC	4 cut(s)	574, 722, 1320, 1642
Ksp22I	TGATCA	2 cut(s)	642, 2320
KspAI	GTTAAC	1 cut(s)	1147
Kzo9I	GATC	7 cut(s)	388, 442, 627, 642, 796, 1347, 2320
LguI	GCTCTTC	2 cut(s)	1865, 2078
LmnI	GCTCC	9 cut(s)	360, 900, 1305, 1528, 1619, 1639, 1855, 2051, 2350
Lsp1109I	GCAGC	5 cut(s)	392, 563, 640, 1813, 2343
LweI	GCATC	2 cut(s)	1081, 1171
MabI	ACCWGGT	1 cut(s)	471
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	5 cut(s)	73, 242, 554, 1591, 1687
MalI	GATC	7 cut(s)	390, 444, 629, 644, 798, 1349, 2322
MbiI	CCGCTC	1 cut(s)	2353
MboI	GATC	7 cut(s)	388, 442, 627, 642, 796, 1347, 2320
MfeI	CAATTG	2 cut(s)	1121, 1692
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	4 cut(s)	357, 843, 1860, 2201
MlsI	TGGCCA	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	6 cut(s)	54, 598, 1511, 1749, 1934, 2211
MmeI	TCCRAC	1 cut(s)	2211
Mox20I	TGGCCA	1 cut(s)	296
MroXI	GAANNNNTTC	2 cut(s)	1103, 2087
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	6 cut(s)	930, 1067, 1146, 1160, 1724, 1767
MslI	CAYNNNNRTG	1 cut(s)	1223
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	2080
MspI	CCGG	3 cut(s)	1323, 1775, 2173
MspR9I	CCNGG	2 cut(s)	473, 1356
MunI	CAATTG	2 cut(s)	1121, 1692
Mva1269I	GAATGC	1 cut(s)	2333
MvaI	CCWGG	2 cut(s)	473, 1356
MvnI	CGCG	2 cut(s)	436, 1380
MwoI	GCNNNNNNNGC	8 cut(s)	149, 361, 847, 2042, 2051, 2060, 2094, 2121
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	7 cut(s)	388, 442, 627, 642, 796, 1347, 2320
NheI	GCTAGC	1 cut(s)	562
NlaIV	GGNNCC	3 cut(s)	1668, 1705, 2096
NmuCI	GTSAC	4 cut(s)	73, 242, 554, 1687
NspI	RCATGY	3 cut(s)	1283, 1963, 2180
NspV	TTCGAA	1 cut(s)	427
PagI	TCATGA	1 cut(s)	2011
PaqCI	CACCTGC	1 cut(s)	1805
PceI	AGGCCT	1 cut(s)	1793
PciI	ACATGT	2 cut(s)	1279, 1959
PciSI	GCTCTTC	2 cut(s)	1865, 2078
PcsI	WCGNNNNNNNCGW	2 cut(s)	433, 2158
PctI	GAATGC	1 cut(s)	2333
PdmI	GAANNNNTTC	2 cut(s)	1103, 2087
PfeI	GAWTC	9 cut(s)	122, 662, 670, 866, 977, 1007, 1084, 2008, 2183
PkrI	GCNGC	6 cut(s)	382, 578, 655, 1828, 2114, 2333
PleI	GAGTC	6 cut(s)	54, 598, 1510, 1749, 1934, 2211
PpsI	GAGTC	6 cut(s)	54, 598, 1510, 1749, 1934, 2211
PscI	ACATGT	2 cut(s)	1279, 1959
PshAI	GACNNNNGTC	1 cut(s)	2221
Psp124BI	GAGCTC	3 cut(s)	357, 1860, 2201
Psp6I	CCWGG	2 cut(s)	471, 1354
PspFI	CCCAGC	1 cut(s)	1316
PspGI	CCWGG	2 cut(s)	471, 1354
PspN4I	GGNNCC	3 cut(s)	1668, 1705, 2096
PspPI	GGNCC	5 cut(s)	305, 1667, 1805, 2095, 2271
PstI	CTGCAG	1 cut(s)	1831
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	796
PvuII	CAGCTG	1 cut(s)	2080
RsaI	GTAC	5 cut(s)	413, 857, 1340, 1394, 2168
RsaNI	GTAC	5 cut(s)	412, 856, 1339, 1393, 2167
RseI	CAYNNNNRTG	1 cut(s)	1223
SacI	GAGCTC	3 cut(s)	357, 1860, 2201
SalI	GTCGAC	1 cut(s)	1963
SapI	GCTCTTC	2 cut(s)	1865, 2078
SaqAI	TTAA	6 cut(s)	930, 1067, 1146, 1160, 1724, 1767
SatI	GCNGC	6 cut(s)	381, 577, 654, 1827, 2113, 2332
Sau3AI	GATC	7 cut(s)	388, 442, 627, 642, 796, 1347, 2320
Sau96I	GGNCC	5 cut(s)	305, 1667, 1805, 2095, 2271
ScaI	AGTACT	1 cut(s)	2168
SchI	GAGTC	6 cut(s)	54, 598, 1511, 1749, 1934, 2211
ScrFI	CCNGG	2 cut(s)	473, 1356
SduI	GDGCHC	4 cut(s)	357, 843, 1860, 2201
SexAI	ACCWGGT	1 cut(s)	471
SfaNI	GCATC	2 cut(s)	1081, 1171
SfcI	CTRYAG	2 cut(s)	162, 1827
SfuI	TTCGAA	1 cut(s)	427
SgrAI	CRCCGGYG	1 cut(s)	1322
SinI	GGWCC	2 cut(s)	1805, 2271
SmiMI	CAYNNNNRTG	1 cut(s)	1223
SmlI	CTYRAG	4 cut(s)	875, 996, 2219, 2302
SmoI	CTYRAG	4 cut(s)	875, 996, 2219, 2302
SpeI	ACTAGT	1 cut(s)	692
SseBI	AGGCCT	1 cut(s)	1793
SsiI	CCGC	5 cut(s)	1380, 1968, 2071, 2112, 2353
SspI	AATATT	1 cut(s)	1974
SstI	GAGCTC	3 cut(s)	357, 1860, 2201
StuI	AGGCCT	1 cut(s)	1793
StyD4I	CCNGG	2 cut(s)	471, 1354
StyI	CCWWGG	3 cut(s)	549, 832, 1934
TaaI	ACNGT	6 cut(s)	166, 292, 1338, 1343, 1886, 2166
TaiI	ACGT	1 cut(s)	501
TatI	WGTACW	3 cut(s)	855, 1338, 2166
TauI	GCSGC	1 cut(s)	2115
TfiI	GAWTC	9 cut(s)	122, 662, 670, 866, 977, 1007, 1084, 2008, 2183
Tru1I	TTAA	6 cut(s)	930, 1067, 1146, 1160, 1724, 1767
Tru9I	TTAA	6 cut(s)	930, 1067, 1146, 1160, 1724, 1767
TscAI	CASTG	8 cut(s)	297, 468, 645, 652, 987, 1348, 1836, 2047
TseFI	GTSAC	4 cut(s)	73, 242, 554, 1687
TseI	GCWGC	5 cut(s)	380, 576, 653, 1826, 2331
Tsp45I	GTSAC	4 cut(s)	73, 242, 554, 1687
TspDTI	ATGAA	9 cut(s)	17, 576, 1187, 1322, 1553, 2000, 2042, 2132, 2223
TspGWI	ACGGA	2 cut(s)	115, 2007
TspRI	CASTG	8 cut(s)	297, 468, 645, 652, 987, 1348, 1836, 2047
VpaK11BI	GGWCC	2 cut(s)	1805, 2271
XagI	CCTNNNNNAGG	2 cut(s)	1812, 1933
XapI	RAATTY	3 cut(s)	1054, 1424, 1540
XceI	RCATGY	3 cut(s)	1283, 1963, 2180
XmiI	GTMKAC	4 cut(s)	468, 480, 1964, 2067
XmnI	GAANNNNTTC	2 cut(s)	1103, 2087
ZraI	GACGTC	1 cut(s)	499
ZrmI	AGTACT	1 cut(s)	2168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.