Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Forward (+)

4943755 .. 4946031

Gene Structure 2277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0063000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGTCAGAAATACAGGGACTTCCAAATTGAATCTCAAGCTAAAGCTTTCAGCTTTCTCAATCAGTCACTTTCTCTACACATACACACCAACATAGATTCCAATTTCAAATCAAAGTTCCGGGTTTTGCATTACTTTGTGTTCTGTAATTCTGATTCAGCAGTTGAAGGAGCTCAGCTTGGAAATATGATTCTAGCTGTGGTGGCATTGCTTCTGTGTGTCTTTTTAGGAGCTTTCGTTCTGATCCCATCTGGGAATACAAAAAACGTTAAGTCAAATGCCAAAGCTGACAAGACAGCCAAGATATACTCTAAAGCTGAGGTTTCTTTGCATAATAAACGAACAGATTGTTGGGTGATTATCAAAAACAAGGTGTATGACCTTACACCATATGTAGAGGTACACCCGGGTGGTGATGCCATCCTCGCACACGCTGGGGATGATTCAACTGTTGGGTTTTATGGGCCGCAGCATGCTAGCTTAGTCTATGATATGGTTCACGAATTCTATATTGGAGATCTGGAGCCTGGAGCCAGTGTAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

182

Amino Acids

20.11

Weight (kDa)

6.69

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	105 - 174	1.3e-20	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	467
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	503
AfaI	GTAC	1 cut(s)	402
AgsI	TTSAA	4 cut(s)	32, 109, 167, 447
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	4 cut(s)	334, 366, 495, 527
AleI	CACNNNNGTG	1 cut(s)	408
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
Alw21I	GWGCWC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	3 cut(s)	122, 407, 408
AsuHPI	GGTGA	2 cut(s)	367, 425
AsuNHI	GCTAGC	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	175
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	2 cut(s)	256, 428
BciT130I	CCWGG	1 cut(s)	528
BcnI	CCSGG	3 cut(s)	122, 407, 408
BfaI	CTAG	2 cut(s)	194, 477
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	2 cut(s)	467, 470
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	2 cut(s)	468, 471
Bme1390I	CCNGG	4 cut(s)	122, 407, 408, 528
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	2 cut(s)	525, 532
BmrFI	CCNGG	4 cut(s)	122, 407, 408, 528
BmsI	GCATC	1 cut(s)	406
BmtI	GCTAGC	1 cut(s)	480
BpmI	CTGGAG	2 cut(s)	542, 549
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	21
BpuMI	CCSGG	3 cut(s)	122, 407, 408
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	3 cut(s)	222, 252, 522
Bse1I	ACTGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	420, 445
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	188, 309
BseNI	ACTGG	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	481
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	121, 407
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	466
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	243, 517
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	2 cut(s)	187, 310
BspLI	GGNNCC	2 cut(s)	525, 532
BspOI	GCTAGC	1 cut(s)	480
BspPI	GGATC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	243, 517
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	474, 478
BstDEI	CTNAG	3 cut(s)	174, 318, 481
BstF5I	GGATG	2 cut(s)	420, 445
BstKTI	GATC	2 cut(s)	246, 520
BstMBI	GATC	2 cut(s)	243, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 425
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	4 cut(s)	120, 405, 406, 526
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	420, 445
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	474, 478
Cfr13I	GGNCC	1 cut(s)	464
Cfr9I	CCCGGG	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	1 cut(s)	473
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	3 cut(s)	174, 318, 481
DpnI	GATC	2 cut(s)	245, 519
DpnII	GATC	2 cut(s)	243, 517
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	1 cut(s)	476
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	472
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	467, 470
FokI	GGATG	2 cut(s)	407, 452
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	467, 470
FspBI	CTAG	2 cut(s)	194, 477
GluI	GCNGC	2 cut(s)	467, 470
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	2 cut(s)	542, 549
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	2 cut(s)	121, 407
Hin1II	CATG	1 cut(s)	476
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	6 cut(s)	4, 32, 98, 155, 190, 443
HpaII	CCGG	2 cut(s)	121, 407
HphI	GGTGA	2 cut(s)	367, 425
Hpy166II	GTNNAC	2 cut(s)	403, 499
Hpy188I	TCNGA	3 cut(s)	9, 154, 243
Hpy188III	TCNNGA	2 cut(s)	500, 521
Hpy8I	GTNNAC	2 cut(s)	403, 499
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	130, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 425
HpyF3I	CTNAG	3 cut(s)	174, 318, 481
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	476
Kzo9I	GATC	2 cut(s)	243, 517
LmnI	GCTCC	4 cut(s)	170, 230, 523, 530
LpnPI	CCDG	7 cut(s)	134, 237, 420, 420, 506, 513, 540
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	194, 477
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	66, 538
MalI	GATC	2 cut(s)	245, 519
MboI	GATC	2 cut(s)	243, 517
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	5 cut(s)	27, 103, 148, 503, 544
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	313, 391, 434
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	408
MspI	CCGG	2 cut(s)	121, 407
MspR9I	CCNGG	4 cut(s)	122, 407, 408, 528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	203, 425
NciI	CCSGG	3 cut(s)	122, 407, 408
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	2 cut(s)	243, 517
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	1 cut(s)	476
NlaIV	GGNNCC	2 cut(s)	525, 532
NmuCI	GTSAC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	476
OliI	CACNNNNGTG	1 cut(s)	408
PaeI	GCATGC	1 cut(s)	476
PfeI	GAWTC	5 cut(s)	32, 98, 155, 190, 443
PkrI	GCNGC	2 cut(s)	468, 471
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	175
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	525, 532
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
RseI	CAYNNNNRTG	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	467, 470
Sau3AI	GATC	2 cut(s)	243, 517
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	4 cut(s)	122, 407, 408, 528
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	1 cut(s)	406
SmaI	CCCGGG	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	5 cut(s)	27, 103, 148, 503, 544
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	2 cut(s)	194, 477
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	4 cut(s)	120, 405, 406, 526
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	270
TasI	AATT	5 cut(s)	27, 103, 148, 503, 544
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	5 cut(s)	32, 98, 155, 190, 443
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	66
TspMI	CCCGGG	1 cut(s)	406
TspRI	CASTG	1 cut(s)	541
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	476
XmaI	CCCGGG	1 cut(s)	406
XspI	CTAG	2 cut(s)	194, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.