Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Forward (+)

82930397 .. 82931217

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGACTCTAGTGCTTGGGCTTTTCCGAGACCCTTTACTCCAATGATGTGGGGTGTTACCGGTGTTTTCTTCCTAGTTGTAGGAACAGTTGTTTGGATTTTGGAGCGCAGGACTAATGAGGATTTTAGGGGCCTCCAAAAAGACAATTGGTCACAATTGTTTGAAGAGAAAACCGGCAGCACACTTGGTCGCTTTGTGGTAATCATATGGCTATTTGTGGTACTAATACTCAACTCCGGCTACACCGTAAGCTTGACTTCGATCCTCACGGTGGAGCAACTTTCTTCACCTGTGAAAGGGATTGAAAGTTTAGTAACGTGCACCGAGCCCATTGGTTATCTAAGAGGTTCCTTTGCTGAAGCTTACTTAACCAACGAGCTGAACATACATCATAGCAGACTTGTTGCCCTTAACTCGCCGAAAGATTATGAGAAGGCCTGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

148

Amino Acids

16.78

Weight (kDa)

5.66

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	16 - 106	1.9e-16	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	271, 296
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	164, 305
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	437
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	3 cut(s)	252, 362, 379
AluI	AGCT	3 cut(s)	252, 362, 379
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	22
Alw44I	GTGCAC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	256
AoxI	GGCC	3 cut(s)	130, 435, 440
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	177
AsiGI	ACCGGT	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	9, 74
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	439
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	131, 349
BmrFI	CCNGG	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 296
Bse118I	RCCGGY	2 cut(s)	59, 173
BseBI	CCWGG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	271, 296
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	189
BshFI	GGCC	3 cut(s)	132, 437, 442
BshTI	ACCGGT	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	60, 174, 237
BslI	CCNNNNNNNGG	2 cut(s)	271, 296
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	132, 437, 442
Bso31I	GGTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	323, 330
Bsp143I	GATC	1 cut(s)	261
BspANI	GGCC	3 cut(s)	132, 437, 442
BspLI	GGNNCC	2 cut(s)	131, 349
BspPI	GGATC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	22
BsrFI	RCCGGY	2 cut(s)	59, 173
BssAI	RCCGGY	2 cut(s)	59, 173
BssMI	GATC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	3 cut(s)	88, 247, 271
Bst6I	CTCTTC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	341
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	437
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	132, 437, 442
CfoI	GCGC	1 cut(s)	108
Cfr10I	RCCGGY	2 cut(s)	59, 173
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	221
CspAI	ACCGGT	1 cut(s)	59
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	330
FaiI	YATR	5 cut(s)	206, 208, 386, 393, 429
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FauNDI	CATATG	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	2 cut(s)	9, 74
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	132, 437, 442
HapII	CCGG	3 cut(s)	60, 174, 237
HhaI	GCGC	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HindIII	AAGCTT	2 cut(s)	250, 360
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	60, 174, 237
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	3 cut(s)	88, 247, 271
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	1 cut(s)	321
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	317
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	103, 274
LpnPI	CCDG	6 cut(s)	73, 94, 187, 250, 303, 424
Lsp1109I	GCAGC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	9, 74
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	3 cut(s)	55, 150, 313
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	3 cut(s)	61, 176, 276
MfeI	CAATTG	2 cut(s)	145, 155
MhlI	GDGCHC	2 cut(s)	323, 330
MluCI	AATT	2 cut(s)	145, 155
MnlI	CCTC	4 cut(s)	112, 143, 275, 338
MseI	TTAA	2 cut(s)	368, 411
MspI	CCGG	3 cut(s)	60, 174, 237
MspR9I	CCNGG	1 cut(s)	439
MunI	CAATTG	2 cut(s)	145, 155
MvaI	CCWGG	1 cut(s)	439
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	1 cut(s)	261
NlaIV	GGNNCC	2 cut(s)	131, 349
NmuCI	GTSAC	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	437
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	131, 349
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	368, 411
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	2 cut(s)	323, 330
SetI	ASST	6 cut(s)	254, 292, 320, 349, 364, 381
Sse9I	AATT	2 cut(s)	145, 155
SseBI	AGGCCT	1 cut(s)	437
SspMI	CTAG	2 cut(s)	9, 74
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	437
TaaI	ACNGT	3 cut(s)	88, 247, 271
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	145, 155
Tru1I	TTAA	2 cut(s)	368, 411
Tru9I	TTAA	2 cut(s)	368, 411
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	150
VneI	GTGCAC	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	294
XspI	CTAG	2 cut(s)	9, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.