Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Forward (+)

82884421 .. 82890248

Gene Structure 5828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCCGGATAAAGATGACAACTTTAGTCATTCAAAAGTTGGGTTGGATGGAAGACAATCACGCCGCGGTGGACTTCAAGTCTTCAGTCAAGATTATTGGGCAGCACTTCTTTACCAGTATTGCTGCAATATGTTGGGTCCTCATACTAGTGGACTCATTAGTAATGTCACTACAAGACCTGATGTATTGAACATTGGTTCGATGTTCACTTTTGATTCTGTCATTGGGAAAATTGCAAAACTTGCCATAACACTTGCGGTTGAAGATGTCAATTCCAATCCCAACATTCTCAATGGCACAAAGCTCTCACTCAAAATGCATAACACCAAATCGAGTAACTTCCTCGGAATCGTTGAAGACCTTGTTGTTCACTACGAGTGGAGAGATGTCATAGCAATATATGTAGATGATGATTTTGGAAGAAATGCTATTGCTTCCTTGGGTGATAAGCTAGCCGAAAAGCGCTGCAAGATTTCTTACAAAGTGCCTTTGACTCCCACAAGAACAAAAGATGAGATCGAAAGGCACCGATCGGATTCGATCCCGCACATTTATACTAGTTGGGGTCTGCAAGTACTTGAAGAAGCGCAGGAGCAGAAGATGATGGATAGTGGATATGTGTGGATTGCTACCGATTGGTTCTCCACCATTTTAGATACAGATCCTTCTCTCCTTGTAGTGCAAACAAACAACATCCAAGGCGTTCTCACATTGCGAATGTACACACCCGATTCACAACTCAAGACGGAATTTAAGTCGAGATGGAGCAACTTGACTAGGGCAAGAAGATTACTTAATAACACTTCTTTTGGTTTAAATACATATGGCCTATACGCGTATGATTCGGTGTTGCTTCTTGCGCAAGCAATTGAATCATTTTTCGCTAATGTGTGCAACGTTTCCTTTTCAAATGACACAAAATTGAGGGAGTTAAGTGGTGGGAAGTTGAATCTTGATGCTTTGAACATTTTCAATGGAGGTAGGCAATTGCTCAAAAGCATTTTAGAGGTTAACACAACCGGCTTAACAGACCAATTAAGTTTGATGCGTATGGGAACTTACTCAATCCCGCATTTGAAGTCATCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

363

Amino Acids

40.79

Weight (kDa)

6.66

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	120 - 348	3.7e-37	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	861
AccB1I	GGYRCC	1 cut(s)	525
AccII	CGCG	2 cut(s)	66, 836
AciI	CCGC	5 cut(s)	64, 66, 257, 545, 1070
AclI	AACGTT	1 cut(s)	897
AclWI	GGATC	2 cut(s)	535, 656
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	2 cut(s)	576, 722
AfeI	AGCGCT	1 cut(s)	464
AflIII	ACRYGT	1 cut(s)	834
AhdI	GACNNNNNGTC	1 cut(s)	77
AhlI	ACTAGT	2 cut(s)	146, 557
AluBI	AGCT	2 cut(s)	304, 451
AluI	AGCT	2 cut(s)	304, 451
AlwI	GGATC	2 cut(s)	535, 656
Aor51HI	AGCGCT	1 cut(s)	464
AoxI	GGCC	1 cut(s)	826
ApeKI	GCWGC	3 cut(s)	101, 123, 465
ApoI	RAATTY	1 cut(s)	749
Asp700I	GAANNNNTTC	1 cut(s)	968
AspLEI	GCGC	3 cut(s)	465, 589, 862
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	455
AsuNHI	GCTAGC	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	525
BbsI	GAAGAC	3 cut(s)	58, 73, 363
BbvI	GCAGC	3 cut(s)	110, 113, 452
BccI	CCATC	3 cut(s)	41, 598, 756
BcuI	ACTAGT	2 cut(s)	146, 557
BfaI	CTAG	4 cut(s)	147, 452, 558, 777
BfoI	RGCGCY	1 cut(s)	466
BisI	GCNGC	4 cut(s)	64, 102, 124, 466
BlsI	GCNGC	4 cut(s)	65, 103, 125, 467
BmcAI	AGTACT	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	137
BmeRI	GACNNNNNGTC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	138, 527
BmsI	GCATC	2 cut(s)	946, 1035
BmtI	GCTAGC	1 cut(s)	455
BpiI	GAAGAC	3 cut(s)	58, 73, 363
BpuEI	CTTGAG	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	660
BsaJI	CCNNGG	4 cut(s)	64, 343, 438, 697
Bse118I	RCCGGY	1 cut(s)	1019
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	710
Bse8I	GATNNNNATC	1 cut(s)	660
BseDI	CCNNGG	4 cut(s)	64, 343, 438, 697
BseGI	GGATG	2 cut(s)	52, 693
BseJI	GATNNNNATC	1 cut(s)	660
BseMI	GCAATG	1 cut(s)	710
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	110, 113, 452
Bsh1236I	CGCG	2 cut(s)	66, 836
Bsh1285I	CGRYCG	1 cut(s)	533
BshFI	GGCC	1 cut(s)	828
BshNI	GGYRCC	1 cut(s)	525
BsiEI	CGRYCG	1 cut(s)	533
BsiSI	CCGG	2 cut(s)	5, 1020
BsnI	GGCC	1 cut(s)	828
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	4 cut(s)	516, 530, 540, 661
BspACI	CCGC	5 cut(s)	64, 66, 257, 545, 1070
BspANI	GGCC	1 cut(s)	828
BspFNI	CGCG	2 cut(s)	66, 836
BspLI	GGNNCC	2 cut(s)	138, 527
BspOI	GCTAGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	535, 656
BspT107I	GGYRCC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	710
BsrFI	RCCGGY	1 cut(s)	1019
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	1019
BssECI	CCNNGG	4 cut(s)	64, 343, 438, 697
BssMI	GATC	4 cut(s)	516, 530, 540, 661
BssT1I	CCWWGG	2 cut(s)	438, 697
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	2 cut(s)	453, 864
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	52, 693
BstFNI	CGCG	2 cut(s)	66, 836
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	3 cut(s)	465, 589, 862
BstKTI	GATC	4 cut(s)	519, 533, 543, 664
BstMBI	GATC	4 cut(s)	516, 530, 540, 661
BstMCI	CGRYCG	1 cut(s)	533
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 859
BstUI	CGCG	2 cut(s)	66, 836
BstV1I	GCAGC	3 cut(s)	110, 113, 452
BstV2I	GAAGAC	3 cut(s)	58, 73, 363
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BsuRI	GGCC	1 cut(s)	828
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	52, 693
Cac8I	GCNNGC	2 cut(s)	453, 864
CfoI	GCGC	3 cut(s)	465, 589, 862
Cfr10I	RCCGGY	1 cut(s)	1019
Cfr13I	GGNCC	1 cut(s)	137
Cfr42I	CCGCGG	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	575, 721
CviJI	RGCY	5 cut(s)	304, 451, 455, 828, 1023
CviKI_1	RGCY	5 cut(s)	304, 451, 455, 828, 1023
CviQI	GTAC	2 cut(s)	575, 721
DpnI	GATC	4 cut(s)	518, 532, 542, 663
DpnII	GATC	4 cut(s)	516, 530, 540, 661
DraI	TTTAAA	1 cut(s)	816
DriI	GACNNNNNGTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	438, 697
Eco47I	GGWCC	1 cut(s)	137
Eco47III	AGCGCT	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	137
EcoT14I	CCWWGG	2 cut(s)	438, 697
EcoT22I	ATGCAT	1 cut(s)	321
ErhI	CCWWGG	2 cut(s)	438, 697
FauI	CCCGC	2 cut(s)	552, 1077
FauNDI	CATATG	1 cut(s)	823
Fnu4HI	GCNGC	4 cut(s)	64, 102, 124, 466
FokI	GGATG	2 cut(s)	59, 680
Fsp4HI	GCNGC	4 cut(s)	64, 102, 124, 466
FspBI	CTAG	4 cut(s)	147, 452, 558, 777
FspI	TGCGCA	1 cut(s)	861
GlaI	GCGC	3 cut(s)	464, 588, 861
GluI	GCNGC	4 cut(s)	64, 102, 124, 466
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	828
HapII	CCGG	2 cut(s)	5, 1020
HhaI	GCGC	3 cut(s)	465, 589, 862
Hin6I	GCGC	3 cut(s)	463, 587, 860
HinP1I	GCGC	3 cut(s)	463, 587, 860
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HinfI	GANTC	9 cut(s)	153, 215, 348, 493, 536, 731, 842, 872, 949
HpaI	GTTAAC	1 cut(s)	1012
HpaII	CCGG	2 cut(s)	5, 1020
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	6 cut(s)	71, 152, 207, 370, 723, 1012
Hpy188I	TCNGA	2 cut(s)	347, 535
Hpy188III	TCNNGA	4 cut(s)	89, 742, 759, 953
Hpy8I	GTNNAC	6 cut(s)	71, 152, 207, 370, 723, 1012
HpyAV	CCTTC	1 cut(s)	675
HpyCH4IV	ACGT	1 cut(s)	897
HpyCH4V	TGCA	7 cut(s)	126, 236, 319, 468, 571, 682, 894
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 859
HpySE526I	ACGT	1 cut(s)	897
HspAI	GCGC	3 cut(s)	463, 587, 860
KspAI	GTTAAC	1 cut(s)	1012
KspI	CCGCGG	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	516, 530, 540, 661
LmnI	GCTCC	2 cut(s)	592, 765
LpnPI	CCDG	5 cut(s)	18, 128, 192, 575, 1033
Lsp1109I	GCAGC	3 cut(s)	110, 113, 452
LweI	GCATC	2 cut(s)	946, 1035
MaeI	CTAG	4 cut(s)	147, 452, 558, 777
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	2 cut(s)	166, 335
MalI	GATC	4 cut(s)	518, 532, 542, 663
MboI	GATC	4 cut(s)	516, 530, 540, 661
MboII	GAAGA	8 cut(s)	63, 73, 275, 368, 432, 593, 610, 798
MfeI	CAATTG	2 cut(s)	867, 986
MflI	RGATCY	1 cut(s)	661
MluCI	AATT	7 cut(s)	231, 271, 749, 867, 920, 986, 1034
MluI	ACGCGT	1 cut(s)	834
MlyI	GAGTC	2 cut(s)	147, 487
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	5 cut(s)	150, 353, 918, 971, 1000
Mph1103I	ATGCAT	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	968
MseI	TTAA	7 cut(s)	753, 795, 815, 932, 1011, 1025, 1037
MslI	CAYNNNNRTG	2 cut(s)	147, 1087
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	2 cut(s)	5, 1020
MunI	CAATTG	2 cut(s)	867, 986
MvnI	CGCG	2 cut(s)	66, 836
MwoI	GCNNNNNNNGC	2 cut(s)	242, 859
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	4 cut(s)	516, 530, 540, 661
NheI	GCTAGC	1 cut(s)	451
NlaIV	GGNNCC	2 cut(s)	138, 527
NmuCI	GTSAC	1 cut(s)	166
NsbI	TGCGCA	1 cut(s)	861
NsiI	ATGCAT	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	968
PfeI	GAWTC	7 cut(s)	215, 348, 536, 731, 842, 872, 949
PkrI	GCNGC	4 cut(s)	65, 103, 125, 467
Ple19I	CGATCG	1 cut(s)	533
PleI	GAGTC	2 cut(s)	147, 487
PpsI	GAGTC	2 cut(s)	147, 487
PpuMI	RGGWCCY	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	897
Psp5II	RGGWCCY	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	138, 527
PspPI	GGNCC	1 cut(s)	137
PspPPI	RGGWCCY	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	661
PvuI	CGATCG	1 cut(s)	533
RsaI	GTAC	2 cut(s)	576, 722
RsaNI	GTAC	2 cut(s)	575, 721
RseI	CAYNNNNRTG	2 cut(s)	147, 1087
SacII	CCGCGG	1 cut(s)	67
SaqAI	TTAA	7 cut(s)	753, 795, 815, 932, 1011, 1025, 1037
SatI	GCNGC	4 cut(s)	64, 102, 124, 466
Sau3AI	GATC	4 cut(s)	516, 530, 540, 661
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	576
SchI	GAGTC	2 cut(s)	147, 487
SetI	ASST	7 cut(s)	181, 306, 363, 453, 900, 982, 1011
SfaNI	GCATC	2 cut(s)	946, 1035
Sfr303I	CCGCGG	1 cut(s)	67
SgrBI	CCGCGG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	147, 1087
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SpeI	ACTAGT	2 cut(s)	146, 557
Sse9I	AATT	7 cut(s)	231, 271, 749, 867, 920, 986, 1034
SsiI	CCGC	5 cut(s)	64, 66, 257, 545, 1070
SspMI	CTAG	4 cut(s)	147, 452, 558, 777
StyI	CCWWGG	2 cut(s)	438, 697
TaiI	ACGT	1 cut(s)	900
TaqI	TCGA	5 cut(s)	200, 332, 519, 539, 758
TasI	AATT	7 cut(s)	231, 271, 749, 867, 920, 986, 1034
TatI	WGTACW	2 cut(s)	574, 720
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	7 cut(s)	215, 348, 536, 731, 842, 872, 949
Tru1I	TTAA	7 cut(s)	753, 795, 815, 932, 1011, 1025, 1037
Tru9I	TTAA	7 cut(s)	753, 795, 815, 932, 1011, 1025, 1037
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	3 cut(s)	101, 123, 465
Tsp45I	GTSAC	1 cut(s)	166
TspGWI	ACGGA	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	749
XmnI	GAANNNNTTC	1 cut(s)	968
XspI	CTAG	4 cut(s)	147, 452, 558, 777
ZrmI	AGTACT	1 cut(s)	576
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.