Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

18810488 .. 18812719

Gene Structure 2232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1229600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCCTTTTGTAGTTTGAATATCAACATGTATCTAGCCTTGCTTCTGTTATTTGTAGTTTTCTACAGTGGCTGTTCTTCTAGTGGACTTAGTCCTACTAATGTCACTGCAAGACCTGATGTTGTGAACATCGGCGCGATGTTCACTTTTGATTCTGTCATTGGAAAAATTGCAAAACTTGCAATAACTCTTGCAGTTGAAGATGTCAATTACGATCCAGAAGTTCTCAATGGAACAAAGCTGACACTTAAAATGAAAAACACCAAATCCAATGACTTTCTAGGCATCATTGAAGCTTTGCAGTTCATGGAGAATGACACGGTAGCCATAATTGGCCCCCAATTCTCAGCAACAGCTCACGTAATCTCAGACATAGAGGATGAGTTAAAAGTCCCTTTACTATCATTTGCAGCAACTGACCCAAATCTGTCTCCAAATCAGTTCCCATTCTTTGTTCGAACAACAAGGAGTGACCTCTTTCAGATGGCTGCAGTGGCAGACCTTGTTGGCTACTATGAGTGGAGAGATGTCATAGCAATATATGTAAATGATGATTTCGGGCGGAATGCCATTGCTGCCTTGAGGGACAAGCTATCCGAAAACCGCTGTAAAATTTCATACAAGGTACCTCTGAGCCCCAAGGCAACCAAAGACGAAATCAGAAAGGCACTGATTAGTGTGTCTTCAATGGAGTCTAGGATTGTGATCCTGCACCTTTATACCAGTTGGGGTTTACAAGTGCTCACCGAAGCGCAAAGCCAAATGATGATGTCGAGTCCATACGTGTGGATTGCCACTGATTGGTTTTCCACTATAATAGATTCAGAACCTTCCTTGCCTTTTGCAGCAACAAATGACATTCAAGGGGTTCTCACATTCAAAATGTACACACCAGAGTCAGAACTCAAAAAGAAGTTTAAATCGCGGTGGAGCAACTTGACTGTTGCAAGGAGGGTGAATGGCTCTTCTTTTGGGTTAAATGCGTATGGTATATATGCCTATGATTCTGTATGGCTTCTTGCGCATGCCCTTGACTCATTTCTCTCGTGGGGGAAATATTTCCTTTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

358

Amino Acids

39.9

Weight (kDa)

5.73

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	54 - 345	2.6e-12	Periplasmic binding protein
ANF_receptor	PF01094	59 - 348	5e-74	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1023
Acc65I	GGTACC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	625
AccB7I	CCANNNNNTGG	1 cut(s)	801
AccII	CGCG	2 cut(s)	137, 925
AciI	CCGC	3 cut(s)	562, 604, 925
AclWI	GGATC	2 cut(s)	209, 700
AcsI	RAATTY	1 cut(s)	612
AfaI	GTAC	2 cut(s)	627, 887
AfiI	CCNNNNNNNGG	1 cut(s)	801
AflIII	ACRYGT	2 cut(s)	27, 783
AgsI	TTSAA	6 cut(s)	19, 200, 293, 687, 863, 880
AluBI	AGCT	4 cut(s)	241, 296, 356, 592
AluI	AGCT	4 cut(s)	241, 296, 356, 592
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	2 cut(s)	209, 700
AlwNI	CAGNNNCTG	2 cut(s)	72, 416
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	4 cut(s)	410, 488, 575, 845
ApoI	RAATTY	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	1058
Asp718I	GGTACC	1 cut(s)	625
AspLEI	GCGC	3 cut(s)	137, 754, 1024
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	736, 967
AsuII	TTCGAA	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	638
BauI	CACGAG	1 cut(s)	1045
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	4 cut(s)	422, 475, 562, 857
BccI	CCATC	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	4 cut(s)	35, 81, 281, 696
BfmI	CTRYAG	2 cut(s)	64, 489
BisI	GCNGC	4 cut(s)	411, 489, 576, 846
BlsI	GCNGC	4 cut(s)	412, 490, 577, 847
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	337, 627
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	457
BpuEI	CTTGAG	1 cut(s)	601
BsaAI	YACGTR	2 cut(s)	361, 784
BsaBI	GATNNNNATC	1 cut(s)	704
BsaJI	CCNNGG	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	1 cut(s)	801
Bse1I	ACTGG	1 cut(s)	723
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	704
BseDI	CCNNGG	1 cut(s)	639
BseGI	GGATG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	704
BseLI	CCNNNNNNNGG	1 cut(s)	801
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	360, 381, 623
BseNI	ACTGG	1 cut(s)	723
BseXI	GCAGC	4 cut(s)	422, 475, 562, 857
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	2 cut(s)	137, 925
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	744
BslFI	GGGAC	2 cut(s)	377, 599
BslI	CCNNNNNNNGG	1 cut(s)	801
BsmAI	GTCTC	1 cut(s)	435
BsmFI	GGGAC	2 cut(s)	377, 599
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	457
Bsp1286I	GDGCHC	2 cut(s)	638, 744
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	2 cut(s)	214, 705
BspACI	CCGC	3 cut(s)	562, 604, 925
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	3 cut(s)	359, 380, 624
BspFNI	CGCG	2 cut(s)	137, 925
BspLI	GGNNCC	2 cut(s)	337, 627
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	2 cut(s)	209, 700
BspQI	GCTCTTC	1 cut(s)	970
BspT104I	TTCGAA	1 cut(s)	457
BspT107I	GGYRCC	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	570
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	1 cut(s)	723
BssECI	CCNNGG	1 cut(s)	639
BssMI	GATC	2 cut(s)	214, 705
BssSI	CACGAG	1 cut(s)	1045
BssT1I	CCWWGG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	1045
Bst4CI	ACNGT	3 cut(s)	68, 322, 943
Bst6I	CTCTTC	1 cut(s)	970
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	885
BstBAI	YACGTR	2 cut(s)	361, 784
BstBI	TTCGAA	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	1026
BstDEI	CTNAG	4 cut(s)	89, 346, 367, 632
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	2 cut(s)	137, 925
BstHHI	GCGC	3 cut(s)	137, 754, 1024
BstKTI	GATC	2 cut(s)	217, 708
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	2 cut(s)	214, 705
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 494, 575, 1021
BstNSI	RCATGY	2 cut(s)	31, 1028
BstSFI	CTRYAG	2 cut(s)	64, 489
BstUI	CGCG	2 cut(s)	137, 925
BstV1I	GCAGC	4 cut(s)	422, 475, 562, 857
BstV2I	GAAGAC	1 cut(s)	675
BstXI	CCANNNNNNTGG	1 cut(s)	786
BsuRI	GGCC	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	2 cut(s)	105, 498
BtsIMutI	CAGTG	5 cut(s)	73, 105, 498, 668, 795
Cac8I	GCNNGC	1 cut(s)	1026
CaiI	CAGNNNCTG	2 cut(s)	72, 416
CfoI	GCGC	3 cut(s)	137, 754, 1024
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	626, 886
CviAII	CATG	3 cut(s)	28, 307, 1025
CviQI	GTAC	2 cut(s)	626, 886
DdeI	CTNAG	4 cut(s)	89, 346, 367, 632
DpnI	GATC	2 cut(s)	216, 707
DpnII	GATC	2 cut(s)	214, 705
DraI	TTTAAA	1 cut(s)	919
Eam1104I	CTCTTC	1 cut(s)	970
EarI	CTCTTC	1 cut(s)	970
EciI	GGCGGA	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	639
EcoT38I	GRGCYC	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	3 cut(s)	31, 310, 1028
FaqI	GGGAC	2 cut(s)	377, 599
FatI	CATG	3 cut(s)	27, 306, 1024
Fnu4HI	GCNGC	4 cut(s)	411, 489, 576, 846
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	4 cut(s)	411, 489, 576, 846
FspBI	CTAG	4 cut(s)	35, 81, 281, 696
FspI	TGCGCA	1 cut(s)	1023
GlaI	GCGC	3 cut(s)	136, 753, 1023
GluI	GCNGC	4 cut(s)	411, 489, 576, 846
HaeIII	GGCC	1 cut(s)	336
HhaI	GCGC	3 cut(s)	137, 754, 1024
Hin1II	CATG	3 cut(s)	31, 310, 1028
Hin6I	GCGC	3 cut(s)	135, 752, 1022
HinP1I	GCGC	3 cut(s)	135, 752, 1022
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	7 cut(s)	152, 692, 775, 821, 896, 1004, 1034
HphI	GGTGA	2 cut(s)	736, 967
Hpy166II	GTNNAC	5 cut(s)	86, 127, 144, 734, 888
Hpy188I	TCNGA	7 cut(s)	370, 483, 598, 633, 662, 826, 901
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	5 cut(s)	86, 127, 144, 734, 888
HpyAV	CCTTC	1 cut(s)	840
HpyCH4III	ACNGT	3 cut(s)	68, 322, 943
HpyCH4IV	ACGT	2 cut(s)	360, 783
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 494, 575, 1021
HpyF3I	CTNAG	4 cut(s)	89, 346, 367, 632
HpySE526I	ACGT	2 cut(s)	360, 783
Hsp92II	CATG	3 cut(s)	31, 310, 1028
HspAI	GCGC	3 cut(s)	135, 752, 1022
KpnI	GGTACC	1 cut(s)	629
Kzo9I	GATC	2 cut(s)	214, 705
LguI	GCTCTTC	1 cut(s)	970
LmnI	GCTCC	1 cut(s)	930
LpnPI	CCDG	5 cut(s)	129, 231, 722, 736, 906
Lsp1109I	GCAGC	4 cut(s)	422, 475, 562, 857
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	4 cut(s)	35, 81, 281, 696
MaeII	ACGT	2 cut(s)	360, 783
MaeIII	GTNAC	2 cut(s)	103, 470
MalI	GATC	2 cut(s)	216, 707
MboI	GATC	2 cut(s)	214, 705
MboII	GAAGA	4 cut(s)	69, 212, 675, 957
MhlI	GDGCHC	2 cut(s)	638, 744
MluCI	AATT	5 cut(s)	168, 208, 330, 341, 612
MlyI	GAGTC	4 cut(s)	701, 784, 905, 1028
MnlI	CCTC	5 cut(s)	370, 485, 576, 639, 945
MroXI	GAANNNNTTC	1 cut(s)	1058
MseI	TTAA	4 cut(s)	249, 386, 918, 977
MslI	CAYNNNNRTG	1 cut(s)	784
MspA1I	CMGCKG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	571
MvnI	CGCG	2 cut(s)	137, 925
MwoI	GCNNNNNNNGC	4 cut(s)	179, 494, 575, 1021
NdeII	GATC	2 cut(s)	214, 705
NlaIII	CATG	3 cut(s)	31, 310, 1028
NlaIV	GGNNCC	2 cut(s)	337, 627
NmuCI	GTSAC	2 cut(s)	103, 470
NsbI	TGCGCA	1 cut(s)	1023
NspI	RCATGY	2 cut(s)	31, 1028
NspV	TTCGAA	1 cut(s)	457
PaeI	GCATGC	1 cut(s)	1028
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	970
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	1058
PfeI	GAWTC	3 cut(s)	152, 821, 1004
PflFI	GACNNNGTC	1 cut(s)	90
PflMI	CCANNNNNTGG	1 cut(s)	801
PkrI	GCNGC	4 cut(s)	412, 490, 577, 847
PleI	GAGTC	4 cut(s)	700, 783, 904, 1028
PpsI	GAGTC	4 cut(s)	700, 783, 904, 1028
Ppu21I	YACGTR	2 cut(s)	361, 784
PscI	ACATGT	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	337, 627
PspPI	GGNCC	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	2 cut(s)	72, 416
PsyI	GACNNNGTC	1 cut(s)	90
RsaI	GTAC	2 cut(s)	627, 887
RsaNI	GTAC	2 cut(s)	626, 886
RseI	CAYNNNNRTG	1 cut(s)	784
SapI	GCTCTTC	1 cut(s)	970
SaqAI	TTAA	4 cut(s)	249, 386, 918, 977
SatI	GCNGC	4 cut(s)	411, 489, 576, 846
Sau3AI	GATC	2 cut(s)	214, 705
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	4 cut(s)	701, 784, 905, 1028
SduI	GDGCHC	2 cut(s)	638, 744
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	2 cut(s)	64, 489
SfuI	TTCGAA	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	784
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
SphI	GCATGC	1 cut(s)	1028
Sse9I	AATT	5 cut(s)	168, 208, 330, 341, 612
SsiI	CCGC	3 cut(s)	562, 604, 925
SspI	AATATT	1 cut(s)	1058
SspMI	CTAG	4 cut(s)	35, 81, 281, 696
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	3 cut(s)	68, 322, 943
TaiI	ACGT	2 cut(s)	363, 786
TaqI	TCGA	2 cut(s)	457, 773
TasI	AATT	5 cut(s)	168, 208, 330, 341, 612
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	3 cut(s)	152, 821, 1004
Tru1I	TTAA	4 cut(s)	249, 386, 918, 977
Tru9I	TTAA	4 cut(s)	249, 386, 918, 977
TscAI	CASTG	5 cut(s)	73, 112, 498, 675, 802
TseFI	GTSAC	2 cut(s)	103, 470
TseI	GCWGC	4 cut(s)	410, 488, 575, 845
Tsp45I	GTSAC	2 cut(s)	103, 470
TspDTI	ATGAA	3 cut(s)	269, 295, 606
TspRI	CASTG	5 cut(s)	73, 112, 498, 675, 802
Tth111I	GACNNNGTC	1 cut(s)	90
Van91I	CCANNNNNTGG	1 cut(s)	801
XapI	RAATTY	1 cut(s)	612
XceI	RCATGY	2 cut(s)	31, 1028
XmnI	GAANNNNTTC	1 cut(s)	1058
XspI	CTAG	4 cut(s)	35, 81, 281, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.