Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

4907950 .. 4913907

Gene Structure 5958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0062800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3846 bp

ATGCATCAACTTTCTTCTTCTTCTTCTTCCTTTTCAAATTATCTAGACCGGCCAGTAGTACTAGCTAGCTTAATTTGCACAGTGTGTTTGAGAAGCAAAATGGGTTCTCATCCGGAGAAGAATGAGAACCATGAGAAAGAAGAGAAGAAGTCCGCAGATTCAGTATTCAAAATTTTCAGATATGCTGATTGGGTTGATGTTGTGCTAATGGTTTTTGGAACCATCGGAGCTATCGGAGATGGCATGTCTACTAACTGTTTGCTGCTCTTTGCCAGCCGTCTTATGAACAACTTGGGGTACGGTCAGAATCAGACCCAACAGAATAATAATCATGGCAATTGGATGGACGAGGTTGAAAAGTGCAGTTTATACTTTGTATACTTGGGATTAGCAGTAATGCTGGTGGCTTTTTTGGAAGGCTATTGTTGGAGCAAAACCAGTGAGAGGCAGGTGCTGAAGATTCGTTACAAGTACTTGGAAGCTGTTCTTAGACAAGAAGTTGGGTTTTTCGATTCACAAGAAGCAACTACTTCGGAGGTGATCAACAGTATATCAAAAGATACTTCTCATTTACAGGAAGTTCTGAGTGAGAAGGTGCCGATATTTTTTATGCACTCGTCAGTGTTCGTCTCCGGGCTTGCTTTCTCCACCTTCTTGTCTTGGAGACTATCCTTAGTAGCATTTCCAACACTTCTTCTCCTGATCATACCCGGAATGATCTATGGGAAATACCTTCTTTATTTGTCTAAACAGTCATACAAAGAGTATGGAAAAGCAAACACCATTGTAGAGCAAGCTCTGAGCTCCATCAAAACCGTCTATTCGTTCACGGCTGAGAGGACAATTTTGGAGAGGTACTCAGCAGTATTGGAGAGAACAAGCAGGCTGGGGATCAAGCAAGGGATTGCAAAAGGTCTTGCTGTAGGAAGCACAGGGCTGTCGTTTGCAATATGGGCATTTCTGGCTTGGTATGGAAGCCATTTGGTGATGTATAGAGGTGAAAGTGGTGGTAGGATCTATGCTGCTGGCATCTCCTTCGTACTAAGTGGACTATCCTTGGGAATGGCACTTCCAGATTTGAGGCACTTTACAGAAGCTTCCATTGCTGCATCACGCATATTCGATAGGATTGACCGAAAACCATTGATTGATGGTGAAGACATAAAAGGACTTGTCTTGGACAACATTAGAGGCGAAGTAGAATTCATAGATGTCAGATTCACATACCCTTCTCGTCCGGATTCCATTGTCCTCAAAGACTTCAATCTCAAAGTAGAAGCAGGGAAGACAATTGCACTTGTTGGTGCCAGCGGAAGTGGCAAATCCACAGCAATTGCATTGGTGCAACGCTTTTATGATGCAGATGGGGGAGTTGTTCGGATTGATGGTGTCGATATAAAGACACTTCAATTGAAGTGGATAAGATCGCAAATGGGACTTGTTAGTCAAGAGCATGCTTTGTTTGGTACATCAATAAAGGAAAATATCATGTTTGGGAAACTCGATGCCAATATGGATGAAGTCACTGCTGCTGCTATGGCTGCCAATGCTCACAATTTCATAAGGCAGCTTCCTGAAGGGTATGAGACCAAGATTGGAGAGCGAGGAGCACTTTTATCGGGGGGACAAAAGCAGCGGATAGCCATTGCTAGAGCAATTATCAAGAATCCTATAATTCTCTTACTTGATGAAGCAACAAGTGCTCTTGACTCTGAGTCAGAGACACTGGTCCAAAATGCTCTTGACCAAGCCTCCATGGGAAGAACCACATTGGTGGTAGCTCACAAGCTTTCTACAGTTCGAAATGCAGACCTCATTGCGGTGGTCAGTGGGGGTTGCATCATCGAAATAGGCTCACACAACGACCTCATCAACCGTCAAAATGGGCAGTATGCAAAGCTAGCAAAGATGCAGAGACAGTTCAGCACCTTTGACAATGTAGACCAAGACCAAAATTCAGATACACGCTTGTCTTCGGTTGCAAGAAGCAGTGCTGGCAGGTTAAGCACCGCAAGATCAAGCCCTGCTATGTTTGCAAAATCACCACTAGCTATTGAGACCCCAGAATCTGTAGTGTCTCATCCCCCAACCTCCTTCTACCGCCTTCTCTCTTTAAACTCCCCTGAATGGAAGCAAGGCCTAATTGGAAGCCTCTCAGCGATAGCCTTTGGCTCAGTCCAACCTATCTATGCCCTCACCGTGGGTGGTATGATATCAGCTTTCTTTGTGCAAAGCCATGAGGAAATGCGTGGACGAATTCGAACATATTCATTGATTTTCTCTGCACTTTCCTTAATCTCCATGACATTGAATCTTTTGCAACATTACAATTTTGCTTATATGGGTGAGCAGCTCACGAAAAGAATCCGATTGCAAATGCTCCAAAAGATCTTGACCTTTGAGACAGCTTGGTTTGATGAGGAGCACAACACAAGTGGGGCATTGTGTTCAAGATTGAGCAATGAGGCTTCCATGGTGAAGTCCCTTGTGGCAGACAGGGTCTCTTTATTAGTCCAAACCACTTCAGCCGTCACAATTGCTATGATATTGGGACTAATAGTTGCTTGGAAGCTAGCACTTGTTATGATTGCGGTCCAACCACTCGCGATTCTTTGCTTCTACACCAAGAAAGTGTTGCTCTCTAGCCTTTCAGCCAATTTTGTCAAGGCCCAAAACCATAGCACCCAAATTGCAGTTGAAGCAGTTTATAACCATAGAATTGTAACTTCATTTGCAAGTGTAGGGAAAGTGCTCCAAATATTCGACAAAGCTCAGGAGGCACCAAGAAAAGAGGCAAGGAAGAAGTCATGGCTGGCTGGCATTGGAATGGGGTCAGCTCAGTGCCTGACATTTATGTCATGGGCATTGGACTTTTGGTATGGTGGTAAACTAGTCGAAAATGGACAAATATCAGCTGGGGATGTGTTCAAAACATTTTTCATATTGGTTAGTACTGGTAAGGTTATAGCAGAAGCTGGGAGCATGACTTCTGATTTAGCCAAGGGTGCTACTGCAGTTGCATCTGTGTTTGAGATTCTTGACAGGCACTCACTGATTCCAGGGTCACAGAATGTTGGGGATGATGATGGTACTAGTGGAATCAAGTTAGAAAAAGTAACAGGGAGGATAGATATGAAGAAAGTTGACTTTGCATACCCAAGCAGGCCGGAGACCCTAGTGTTGCGCCAATTTAGCTTGGAGGTCAAGGCAGGCACAAGCATTGGACTTGTTGGGAAAAGTGGGTGTGGTAAATCAACTGTGATTGGACTGATACAAAGGTTTTATGATGTTGAGAGGGGGTCAGTGAAGGTAGATGGAGTTGATATAAGGGAGCTAGATGTTCAATGGTATAGGAAGCACACTGCCCTTGTTAGCCAAGAGCCGGTGATATATTCAGGCACCATCCGCGACAACATCATGTTCGGAAAGCTTGATGCTTCGGAAAATGAAGTCGTAGAGGCTGCCAGAGCTGCCAATGCTCACGAATTCATCTCAGCCTTGAAAGACGGGTATGAGACAGAATGTGGTGAAAGAGGAGTGCAGCTCTCAGGAGGGCAGAAGCAAAGAATAGCAATAGCAAGAGCAATACTTAGGAACCCTATAATACTATTGTTAGATGAGGCAACAAGCGCTCTTGATGTGCAATCGGAGCACCTTGTGCAGGAAGCATTGGACCGAATCATGGTTGGAAGGACCACAATTGTGATAGCACATCGACTTAACACCATAAAAAACCTTGAGATGATTGCAGTTGTCGAAGATGGGAAGGTCATAGAGAAAGGCACTTATGCTCAGCTCAAGCACAAGCGTGGTGCCTTCTTCAACCTTGCTAGCTGTCAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

1281

Amino Acids

140.8

Weight (kDa)

8.64

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	89 - 333	1.7e-46	ABC transporter transmembrane region
ABC_tran	PF00005	418 - 567	1.6e-30	ABC transporter
ABC_membrane	PF00664	717 - 984	2.6e-46	ABC transporter transmembrane region
ABC_tran	PF00005	1061 - 1210	7.9e-30	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2709
AarI	CACCTGC	1 cut(s)	439
AasI	GACNNNNNNGTC	2 cut(s)	1443, 2854
Acc36I	ACCTGC	2 cut(s)	439, 1989
AccB1I	GGYRCC	5 cut(s)	595, 1304, 2779, 3398, 3812
AccI	GTMKAC	3 cut(s)	248, 378, 1941
AccII	CGCG	2 cut(s)	2606, 3408
AccIII	TCCGGA	2 cut(s)	112, 1237
AciI	CCGC	8 cut(s)	153, 1311, 1636, 1820, 2010, 2101, 2591, 3406
AclWI	GGATC	2 cut(s)	899, 1022
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	5 cut(s)	171, 1202, 1954, 2256, 3485
AcuI	CTGAAG	3 cut(s)	476, 1596, 2508
AdeI	CACNNNGTG	2 cut(s)	84, 3658
AfaI	GTAC	8 cut(s)	60, 299, 473, 857, 1041, 1468, 2953, 3091
AfeI	AGCGCT	1 cut(s)	3631
AfiI	CCNNNNNNNGG	7 cut(s)	444, 1819, 2127, 2200, 3382, 3661, 3682
AhdI	GACNNNNNGTC	1 cut(s)	1714
AhlI	ACTAGT	2 cut(s)	2890, 3092
AjnI	CCWGG	1 cut(s)	3058
AleI	CACNNNNGTG	3 cut(s)	1772, 3701, 3807
Alw21I	GWGCWC	6 cut(s)	806, 1612, 1705, 2427, 2754, 3654
AlwI	GGATC	2 cut(s)	899, 1022
AlwNI	CAGNNNCTG	4 cut(s)	454, 2069, 2845, 2975
Aor13HI	TCCGGA	2 cut(s)	112, 1237
Aor51HI	AGCGCT	1 cut(s)	3631
AoxI	GGCC	4 cut(s)	50, 2137, 2667, 3164
ApoI	RAATTY	5 cut(s)	171, 1202, 1954, 2256, 3485
Asp700I	GAANNNNTTC	2 cut(s)	483, 2266
AspLEI	GCGC	2 cut(s)	3186, 3632
AspS9I	GGNCC	5 cut(s)	1729, 2593, 2668, 3673, 3693
AsuC2I	CCSGG	2 cut(s)	634, 711
AsuII	TTCGAA	2 cut(s)	1801, 2260
AsuNHI	GCTAGC	4 cut(s)	65, 1900, 2572, 3830
AvaII	GGWCC	4 cut(s)	1729, 2593, 3673, 3693
BaeI	ACNNNNGTAYC	2 cut(s)	3263, 3296
BanI	GGYRCC	5 cut(s)	595, 1304, 2779, 3398, 3812
BanII	GRGCYC	1 cut(s)	806
BarI	GAAGNNNNNNTAC	2 cut(s)	449, 481
BbsI	GAAGAC	3 cut(s)	1164, 1292, 1965
Bbv12I	GWGCWC	6 cut(s)	806, 1612, 1705, 2427, 2754, 3654
BceAI	ACGGC	3 cut(s)	261, 846, 2513
BcgI	CGANNNNNNTGC	6 cut(s)	513, 547, 1018, 1052, 1599, 1633
BciT130I	CCWGG	1 cut(s)	3060
BclI	TGATCA	2 cut(s)	540, 702
BcnI	CCSGG	2 cut(s)	634, 711
BcuI	ACTAGT	2 cut(s)	2890, 3092
BfmI	CTRYAG	4 cut(s)	921, 1794, 2070, 3012
BfoI	RGCGCY	1 cut(s)	3633
BfuAI	ACCTGC	2 cut(s)	439, 1989
BglII	AGATCT	1 cut(s)	2388
BlpI	GCTNAGC	1 cut(s)	3792
BmcAI	AGTACT	3 cut(s)	60, 473, 2953
Bme1390I	CCNGG	3 cut(s)	634, 711, 3060
Bme18I	GGWCC	4 cut(s)	1729, 2593, 3673, 3693
BmeRI	GACNNNNNGTC	1 cut(s)	1714
BmgT120I	GGNCC	5 cut(s)	1729, 2593, 2668, 3673, 3693
BmiI	GGNNCC	7 cut(s)	220, 597, 1306, 2781, 3400, 3596, 3814
BmrFI	CCNGG	3 cut(s)	634, 711, 3060
BmsI	GCATC	9 cut(s)	13, 1038, 1118, 1348, 1495, 1848, 1899, 3029, 3424
BmtI	GCTAGC	4 cut(s)	69, 1904, 2576, 3834
BoxI	GACNNNNGTC	1 cut(s)	1727
BpiI	GAAGAC	3 cut(s)	1164, 1292, 1965
BplI	GAGNNNNNCTC	4 cut(s)	842, 874, 3528, 3560
Bpu10I	CCTNAGC	1 cut(s)	2772
Bpu1102I	GCTNAGC	1 cut(s)	3792
Bpu14I	TTCGAA	2 cut(s)	1801, 2260
BpuEI	CTTGAG	2 cut(s)	3758, 3782
BpuMI	CCSGG	2 cut(s)	634, 711
BsaI	GGTCTC	4 cut(s)	1580, 2051, 2506, 3164
BsaJI	CCNNGG	6 cut(s)	1056, 1755, 2199, 2472, 3000, 3059
BsaWI	WCCGGW	2 cut(s)	112, 1237
BsaXI	ACNNNNNCTCC	4 cut(s)	681, 711, 1736, 1766
Bsc4I	CCNNNNNNNGG	7 cut(s)	444, 1819, 2127, 2200, 3382, 3661, 3682
Bse118I	RCCGGY	2 cut(s)	48, 3382
Bse1I	ACTGG	4 cut(s)	53, 438, 1731, 2959
Bse3DI	GCAATG	4 cut(s)	1101, 1644, 1815, 2467
BseAI	TCCGGA	2 cut(s)	112, 1237
BseBI	CCWGG	1 cut(s)	3060
BseDI	CCNNGG	6 cut(s)	1056, 1755, 2199, 2472, 3000, 3059
BseGI	GGATG	7 cut(s)	109, 348, 1522, 2080, 2926, 3085, 3402
BseLI	CCNNNNNNNGG	7 cut(s)	444, 1819, 2127, 2200, 3382, 3661, 3682
BseMI	GCAATG	4 cut(s)	1101, 1644, 1815, 2467
BseNI	ACTGG	4 cut(s)	53, 438, 1731, 2959
BseRI	GAGGAG	3 cut(s)	1620, 2435, 3549
BseYI	CCCAGC	3 cut(s)	886, 2915, 2975
BsgI	GTGCAG	4 cut(s)	382, 2268, 3560, 3680
Bsh1236I	CGCG	2 cut(s)	2606, 3408
BshFI	GGCC	4 cut(s)	52, 2139, 2669, 3166
BshNI	GGYRCC	5 cut(s)	595, 1304, 2779, 3398, 3812
BsiHKAI	GWGCWC	6 cut(s)	806, 1612, 1705, 2427, 2754, 3654
BsiSI	CCGG	7 cut(s)	49, 113, 633, 711, 1238, 3167, 3383
BslFI	GGGAC	4 cut(s)	1449, 1638, 2467, 2565
BslI	CCNNNNNNNGG	7 cut(s)	444, 1819, 2127, 2200, 3382, 3661, 3682
BsmBI	CGTCTC	1 cut(s)	634
BsmFI	GGGAC	4 cut(s)	1449, 1638, 2467, 2565
BsnI	GGCC	4 cut(s)	52, 2139, 2669, 3166
Bso31I	GGTCTC	4 cut(s)	1580, 2051, 2506, 3164
Bsp119I	TTCGAA	2 cut(s)	1801, 2260
Bsp1286I	GDGCHC	6 cut(s)	806, 1612, 1705, 2427, 2754, 3654
Bsp13I	TCCGGA	2 cut(s)	112, 1237
Bsp143I	GATC	8 cut(s)	540, 702, 717, 891, 1014, 1424, 2015, 2388
Bsp1720I	GCTNAGC	1 cut(s)	3792
Bsp19I	CCATGG	2 cut(s)	1755, 2472
Bsp68I	TCGCGA	1 cut(s)	2606
BspACI	CCGC	8 cut(s)	153, 1311, 1636, 1820, 2010, 2101, 2591, 3406
BspANI	GGCC	4 cut(s)	52, 2139, 2669, 3166
BspEI	TCCGGA	2 cut(s)	112, 1237
BspFNI	CGCG	2 cut(s)	2606, 3408
BspLI	GGNNCC	7 cut(s)	220, 597, 1306, 2781, 3400, 3596, 3814
BspMAI	CTGCAG	1 cut(s)	3016
BspMI	ACCTGC	2 cut(s)	439, 1989
BspOI	GCTAGC	4 cut(s)	69, 1904, 2576, 3834
BspPI	GGATC	2 cut(s)	899, 1022
BspT104I	TTCGAA	2 cut(s)	1801, 2260
BspT107I	GGYRCC	5 cut(s)	595, 1304, 2779, 3398, 3812
BspTNI	GGTCTC	4 cut(s)	1580, 2051, 2506, 3164
BsrDI	GCAATG	4 cut(s)	1101, 1644, 1815, 2467
BsrFI	RCCGGY	2 cut(s)	48, 3382
BsrI	ACTGG	4 cut(s)	53, 438, 1731, 2959
BssAI	RCCGGY	2 cut(s)	48, 3382
BssECI	CCNNGG	6 cut(s)	1056, 1755, 2199, 2472, 3000, 3059
BssMI	GATC	8 cut(s)	540, 702, 717, 891, 1014, 1424, 2015, 2388
BssNAI	GTATAC	1 cut(s)	379
BssT1I	CCWWGG	4 cut(s)	1056, 1755, 2472, 3000
Bst1107I	GTATAC	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	3060
Bst6I	CTCTTC	1 cut(s)	135
BstAPI	GCANNNNNTGC	2 cut(s)	1700, 3658
BstBI	TTCGAA	2 cut(s)	1801, 2260
BstDSI	CCRYGG	3 cut(s)	1755, 2199, 2472
BstENI	CCTNNNNNAGG	1 cut(s)	3659
BstF5I	GGATG	7 cut(s)	109, 348, 1522, 2080, 2926, 3085, 3402
BstFNI	CGCG	2 cut(s)	2606, 3408
BstH2I	RGCGCY	1 cut(s)	3633
BstHHI	GCGC	2 cut(s)	3186, 3632
BstKTI	GATC	8 cut(s)	543, 705, 720, 894, 1017, 1427, 2018, 2391
BstMBI	GATC	8 cut(s)	540, 702, 717, 891, 1014, 1424, 2015, 2388
BstNI	CCWGG	1 cut(s)	3060
BstNSI	RCATGY	2 cut(s)	247, 1457
BstPAI	GACNNNNGTC	1 cut(s)	1727
BstSCI	CCNGG	3 cut(s)	632, 709, 3058
BstSFI	CTRYAG	4 cut(s)	921, 1794, 2070, 3012
BstUI	CGCG	2 cut(s)	2606, 3408
BstV2I	GAAGAC	3 cut(s)	1164, 1292, 1965
BstX2I	RGATCY	2 cut(s)	1014, 2388
BstXI	CCANNNNNNTGG	1 cut(s)	1774
BstYI	RGATCY	2 cut(s)	1014, 2388
BstZ17I	GTATAC	1 cut(s)	379
BsuRI	GGCC	4 cut(s)	52, 2139, 2669, 3166
BtgI	CCRYGG	3 cut(s)	1755, 2199, 2472
BtsCI	GGATG	7 cut(s)	109, 348, 1522, 2080, 2926, 3085, 3402
BtsI	GCAGTG	3 cut(s)	1524, 1996, 3360
BtuMI	TCGCGA	1 cut(s)	2606
BveI	ACCTGC	2 cut(s)	439, 1989
CaiI	CAGNNNCTG	4 cut(s)	454, 2069, 2845, 2975
CfoI	GCGC	2 cut(s)	3186, 3632
Cfr10I	RCCGGY	2 cut(s)	48, 3382
Cfr13I	GGNCC	5 cut(s)	1729, 2593, 2668, 3673, 3693
Csp6I	GTAC	8 cut(s)	59, 298, 472, 856, 1040, 1467, 2952, 3090
CspCI	CAANNNNNGTGG	6 cut(s)	1315, 1350, 1397, 1432, 2416, 2451
CviQI	GTAC	8 cut(s)	59, 298, 472, 856, 1040, 1467, 2952, 3090
DpnI	GATC	8 cut(s)	542, 704, 719, 893, 1016, 1426, 2017, 2390
DpnII	GATC	8 cut(s)	540, 702, 717, 891, 1014, 1424, 2015, 2388
DraI	TTTAAA	1 cut(s)	2115
DraIII	CACNNNGTG	2 cut(s)	84, 3658
DrdI	GACNNNNNNGTC	2 cut(s)	1443, 2854
DriI	GACNNNNNGTC	1 cut(s)	1714
DseDI	GACNNNNNNGTC	2 cut(s)	1443, 2854
EaeI	YGGCCR	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	1714
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	804
Eco130I	CCWWGG	4 cut(s)	1056, 1755, 2472, 3000
Eco147I	AGGCCT	1 cut(s)	2139
Eco24I	GRGCYC	1 cut(s)	806
Eco31I	GGTCTC	4 cut(s)	1580, 2051, 2506, 3164
Eco32I	GATATC	1 cut(s)	2214
Eco47I	GGWCC	4 cut(s)	1729, 2593, 3673, 3693
Eco47III	AGCGCT	1 cut(s)	3631
Eco53kI	GAGCTC	1 cut(s)	804
Eco57I	CTGAAG	3 cut(s)	476, 1596, 2508
EcoICRI	GAGCTC	1 cut(s)	804
EcoNI	CCTNNNNNAGG	1 cut(s)	3659
EcoRI	GAATTC	3 cut(s)	1202, 2256, 3485
EcoRII	CCWGG	1 cut(s)	3058
EcoRV	GATATC	1 cut(s)	2214
EcoT14I	CCWWGG	4 cut(s)	1056, 1755, 2472, 3000
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	806
ErhI	CCWWGG	4 cut(s)	1056, 1755, 2472, 3000
Esp3I	CGTCTC	1 cut(s)	634
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	4 cut(s)	1449, 1638, 2467, 2565
FbaI	TGATCA	2 cut(s)	540, 702
FblI	GTMKAC	3 cut(s)	248, 378, 1941
FokI	GGATG	7 cut(s)	96, 355, 1529, 2067, 2933, 3092, 3389
FriOI	GRGCYC	1 cut(s)	806
GlaI	GCGC	2 cut(s)	3185, 3631
GsaI	CCCAGC	3 cut(s)	890, 2919, 2979
HaeII	RGCGCY	1 cut(s)	3633
HaeIII	GGCC	4 cut(s)	52, 2139, 2669, 3166
HapII	CCGG	7 cut(s)	49, 113, 633, 711, 1238, 3167, 3383
HhaI	GCGC	2 cut(s)	3186, 3632
Hin6I	GCGC	2 cut(s)	3184, 3630
HinP1I	GCGC	2 cut(s)	3184, 3630
HincII	GTYRAC	1 cut(s)	3145
HindII	GTYRAC	1 cut(s)	3145
HindIII	AAGCTT	3 cut(s)	1095, 1787, 3428
HpaII	CCGG	7 cut(s)	49, 113, 633, 711, 1238, 3167, 3383
Hpy166II	GTNNAC	8 cut(s)	249, 379, 828, 1049, 1942, 2252, 2888, 3145
Hpy8I	GTNNAC	8 cut(s)	249, 379, 828, 1049, 1942, 2252, 2888, 3145
HspAI	GCGC	2 cut(s)	3184, 3630
Kpn2I	TCCGGA	2 cut(s)	112, 1237
Ksp22I	TGATCA	2 cut(s)	540, 702
Kzo9I	GATC	8 cut(s)	540, 702, 717, 891, 1014, 1424, 2015, 2388
LweI	GCATC	9 cut(s)	13, 1038, 1118, 1348, 1495, 1848, 1899, 3029, 3424
MaeIII	GTNAC	6 cut(s)	464, 1522, 2530, 2722, 3063, 3115
MalI	GATC	8 cut(s)	542, 704, 719, 893, 1016, 1426, 2017, 2390
MboI	GATC	8 cut(s)	540, 702, 717, 891, 1014, 1424, 2015, 2388
MfeI	CAATTG	6 cut(s)	337, 1290, 1332, 1409, 2535, 3699
MflI	RGATCY	2 cut(s)	1014, 2388
MhlI	GDGCHC	6 cut(s)	806, 1612, 1705, 2427, 2754, 3654
MlyI	GAGTC	2 cut(s)	1703, 1724
MmeI	TCCRAC	5 cut(s)	407, 710, 2203, 2620, 3667
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	2 cut(s)	112, 1237
MroXI	GAANNNNTTC	2 cut(s)	483, 2266
MseI	TTAA	6 cut(s)	71, 2003, 2114, 2294, 3720, 3844
MslI	CAYNNNNRTG	5 cut(s)	1772, 1820, 2825, 3701, 3807
MspA1I	CMGCKG	3 cut(s)	1311, 1636, 2915
MspI	CCGG	7 cut(s)	49, 113, 633, 711, 1238, 3167, 3383
MspR9I	CCNGG	3 cut(s)	634, 711, 3060
MunI	CAATTG	6 cut(s)	337, 1290, 1332, 1409, 2535, 3699
MvaI	CCWGG	1 cut(s)	3060
MvnI	CGCG	2 cut(s)	2606, 3408
NciI	CCSGG	2 cut(s)	634, 711
NcoI	CCATGG	2 cut(s)	1755, 2472
NdeII	GATC	8 cut(s)	540, 702, 717, 891, 1014, 1424, 2015, 2388
NheI	GCTAGC	4 cut(s)	65, 1900, 2572, 3830
NlaIV	GGNNCC	7 cut(s)	220, 597, 1306, 2781, 3400, 3596, 3814
NmuCI	GTSAC	3 cut(s)	1522, 2530, 3063
NruI	TCGCGA	1 cut(s)	2606
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	247, 1457
NspV	TTCGAA	2 cut(s)	1801, 2260
OliI	CACNNNNGTG	3 cut(s)	1772, 3701, 3807
PaeI	GCATGC	1 cut(s)	1457
PaqCI	CACCTGC	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	2139
PdmI	GAANNNNTTC	2 cut(s)	483, 2266
PflFI	GACNNNGTC	1 cut(s)	2498
PleI	GAGTC	2 cut(s)	1703, 1723
PpsI	GAGTC	2 cut(s)	1703, 1723
PshAI	GACNNNNGTC	1 cut(s)	1727
PsiI	TTATAA	1 cut(s)	2709
Psp124BI	GAGCTC	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	3058
PspFI	CCCAGC	3 cut(s)	886, 2915, 2975
PspGI	CCWGG	1 cut(s)	3058
PspN4I	GGNNCC	7 cut(s)	220, 597, 1306, 2781, 3400, 3596, 3814
PspPI	GGNCC	5 cut(s)	1729, 2593, 2668, 3673, 3693
PstI	CTGCAG	1 cut(s)	3016
PstNI	CAGNNNCTG	4 cut(s)	454, 2069, 2845, 2975
PsuI	RGATCY	2 cut(s)	1014, 2388
PsyI	GACNNNGTC	1 cut(s)	2498
PvuII	CAGCTG	1 cut(s)	2915
RruI	TCGCGA	1 cut(s)	2606
RsaI	GTAC	8 cut(s)	60, 299, 473, 857, 1041, 1468, 2953, 3091
RsaNI	GTAC	8 cut(s)	59, 298, 472, 856, 1040, 1467, 2952, 3090
RseI	CAYNNNNRTG	5 cut(s)	1772, 1820, 2825, 3701, 3807
SacI	GAGCTC	1 cut(s)	806
SaqAI	TTAA	6 cut(s)	71, 2003, 2114, 2294, 3720, 3844
Sau3AI	GATC	8 cut(s)	540, 702, 717, 891, 1014, 1424, 2015, 2388
Sau96I	GGNCC	5 cut(s)	1729, 2593, 2668, 3673, 3693
ScaI	AGTACT	3 cut(s)	60, 473, 2953
SchI	GAGTC	2 cut(s)	1703, 1724
ScrFI	CCNGG	3 cut(s)	634, 711, 3060
SduI	GDGCHC	6 cut(s)	806, 1612, 1705, 2427, 2754, 3654
SfaNI	GCATC	9 cut(s)	13, 1038, 1118, 1348, 1495, 1848, 1899, 3029, 3424
SfcI	CTRYAG	4 cut(s)	921, 1794, 2070, 3012
SfuI	TTCGAA	2 cut(s)	1801, 2260
SinI	GGWCC	4 cut(s)	1729, 2593, 3673, 3693
SmiMI	CAYNNNNRTG	5 cut(s)	1772, 1820, 2825, 3701, 3807
SmlI	CTYRAG	2 cut(s)	3737, 3797
SmoI	CTYRAG	2 cut(s)	3737, 3797
SpeI	ACTAGT	2 cut(s)	2890, 3092
SphI	GCATGC	1 cut(s)	1457
SseBI	AGGCCT	1 cut(s)	2139
SsiI	CCGC	8 cut(s)	153, 1311, 1636, 1820, 2010, 2101, 2591, 3406
SspI	AATATT	1 cut(s)	2760
SstI	GAGCTC	1 cut(s)	806
StuI	AGGCCT	1 cut(s)	2139
StyD4I	CCNGG	3 cut(s)	632, 709, 3058
StyI	CCWWGG	4 cut(s)	1056, 1755, 2472, 3000
TaqII	GACCGA	2 cut(s)	1149, 3690
TatI	WGTACW	3 cut(s)	58, 471, 2951
Tru1I	TTAA	6 cut(s)	71, 2003, 2114, 2294, 3720, 3844
Tru9I	TTAA	6 cut(s)	71, 2003, 2114, 2294, 3720, 3844
TseFI	GTSAC	3 cut(s)	1522, 2530, 3063
Tsp45I	GTSAC	3 cut(s)	1522, 2530, 3063
Tth111I	GACNNNGTC	1 cut(s)	2498
VpaK11BI	GGWCC	4 cut(s)	1729, 2593, 3673, 3693
XagI	CCTNNNNNAGG	1 cut(s)	3659
XapI	RAATTY	5 cut(s)	171, 1202, 1954, 2256, 3485
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	2 cut(s)	247, 1457
XmiI	GTMKAC	3 cut(s)	248, 378, 1941
XmnI	GAANNNNTTC	2 cut(s)	483, 2266
ZrmI	AGTACT	3 cut(s)	60, 473, 2953
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.