Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Forward (+)

34037745 .. 34040117

Gene Structure 2373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56878

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATGTGGGGTGTTACTGGTGTTTTCTTCCTAGTTGTGGGAACAGTTGTTTGGATTTTGGAGCGCAGGACTAATGAGGATTTTAGGGGGCCTCCAAAGAGACAATTTGTCACAATTGTTTGGTTTAGCTTTTCGACTTTGTTCTTCTCCCAGAAAGAGAAAACTGGCAGCACACTTGGTCGCTTTGTGGTAATCATATGGCTATTTGTGCAACTTTCTTCACCTGTGAAAGGGATTGAAAGTTTAGTGACAGGCACTGAGCCCATTGGTTATCAAAGGGGTTCCTTTGCTGAAGCTTACTTAACCGACGAGCTAAACATACATCATAGCAGACTTGTTGCCCTTAACTCGCCGGAAGATTATGAGAAGGCCTTGAAGAAAGGTCCTAGTGCAGGTGGTGTTGCTGCGGTGATTGATGAGCGTGCTTACATGCAGCTCTTCCTCTCTAGTCGATGTGGATATAGTATTGTTGGTCAAGAGTTCACTAAAATGGGTTGGGGATTTGCCTTTGCGAAGGACTCCCCGTTGGCAATCGACATGTCGACCGCCATATTGAAGCTATCGGAGAATGGAAACCTCCAAAAGATCCATGACAAGTGGATAATGAAAAGTGCTTGCAGTGTAGAAGGAGCAAAGCAAGCAGTAGACCGCCTTCAACTAAAGAGCTTTTGGGGCCTCTTTCTACTAAGTGGCATTGCTTGCTTTCTTGCTCTTCTTCTTTATGTTCTTCGCATGATTCGACAGTACTACCGTCATGCAGATTCCGACATCAAGTGTTCACAATCAATAGGACGAGTGAAGTCGTTTGTTTCGTTTGTAAATAAGAGGGAACAAGAAGTGAAAAGCGTGAAAAGCAGTTCCAAGAGAAGAAGGACTGATAACAAATCCTCAAATAAGATAGTGCATCGTCAAGAATGCAGTAGCGATGGTTTGGATGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

314

Amino Acids

35.4

Weight (kDa)

9.48

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	2 - 234	3.3e-17	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	383
AccI	GTMKAC	2 cut(s)	542, 645
AciI	CCGC	3 cut(s)	407, 546, 649
AclWI	GGATC	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	3 cut(s)	37, 230, 392
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	4 cut(s)	239, 376, 556, 656
AhdI	GACNNNNNGTC	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AluBI	AGCT	6 cut(s)	129, 296, 313, 436, 559, 666
AluI	AGCT	6 cut(s)	129, 296, 313, 436, 559, 666
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	580
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	89, 369, 673
ApeKI	GCWGC	3 cut(s)	168, 404, 433
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	3 cut(s)	89, 383, 673
AsuHPI	GGTGA	2 cut(s)	213, 421
AvaII	GGWCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	264
BarI	GAAGNNNNNNTAC	2 cut(s)	636, 668
BbvI	GCAGC	3 cut(s)	180, 391, 445
BccI	CCATC	1 cut(s)	920
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	3 cut(s)	32, 387, 447
BfuAI	ACCTGC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	169, 405, 434
BlsI	GCNGC	3 cut(s)	170, 406, 435
BmcAI	AGTACT	1 cut(s)	746
Bme18I	GGWCC	1 cut(s)	383
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	89, 383, 673
BmiI	GGNNCC	3 cut(s)	90, 283, 674
BmsI	GCATC	1 cut(s)	913
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 230, 392
Bse1I	ACTGG	2 cut(s)	22, 169
Bse3DI	GCAATG	1 cut(s)	693
BseGI	GGATG	1 cut(s)	940
BseLI	CCNNNNNNNGG	3 cut(s)	37, 230, 392
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	22, 169
BseXI	GCAGC	3 cut(s)	180, 391, 445
BsgI	GTGCAG	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	546
BshFI	GGCC	3 cut(s)	91, 371, 675
BsiEI	CGRYCG	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	3 cut(s)	37, 230, 392
BsmAI	GTCTC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	920
BsnI	GGCC	3 cut(s)	91, 371, 675
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	585
BspACI	CCGC	3 cut(s)	407, 546, 649
BspANI	GGCC	3 cut(s)	91, 371, 675
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	3 cut(s)	90, 283, 674
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	580
BspQI	GCTCTTC	2 cut(s)	443, 717
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	22, 169
BssMI	GATC	1 cut(s)	585
Bst4CI	ACNGT	3 cut(s)	46, 744, 752
Bst6I	CTCTTC	2 cut(s)	443, 717
BstAPI	GCANNNNNTGC	1 cut(s)	699
BstC8I	GCNNGC	4 cut(s)	423, 616, 639, 700
BstDEI	CTNAG	2 cut(s)	258, 686
BstENI	CCTNNNNNAGG	2 cut(s)	228, 390
BstF5I	GGATG	1 cut(s)	940
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	588
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	585
BstMCI	CGRYCG	1 cut(s)	546
BstMWI	GCNNNNNNNGC	5 cut(s)	208, 638, 672, 699, 852
BstNSI	RCATGY	2 cut(s)	433, 541
BstV1I	GCAGC	3 cut(s)	180, 391, 445
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	3 cut(s)	91, 371, 675
BtgZI	GCGATG	1 cut(s)	939
BtsCI	GGATG	1 cut(s)	940
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	255, 625
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	4 cut(s)	423, 616, 639, 700
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	3 cut(s)	89, 383, 673
Csp6I	GTAC	1 cut(s)	745
CviAII	CATG	5 cut(s)	430, 538, 590, 733, 755
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	2 cut(s)	258, 686
DpnI	GATC	1 cut(s)	587
DpnII	GATC	1 cut(s)	585
DriI	GACNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	2 cut(s)	443, 717
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	2 cut(s)	443, 717
Eco147I	AGGCCT	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	312
EcoNI	CCTNNNNNAGG	2 cut(s)	228, 390
EcoO109I	RGGNCCY	3 cut(s)	89, 383, 673
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	5 cut(s)	433, 541, 593, 736, 758
FatI	CATG	5 cut(s)	429, 537, 589, 732, 754
FauNDI	CATATG	1 cut(s)	197
FblI	GTMKAC	2 cut(s)	542, 645
Fnu4HI	GCNGC	3 cut(s)	169, 405, 434
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	3 cut(s)	169, 405, 434
FspBI	CTAG	3 cut(s)	32, 387, 447
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	3 cut(s)	169, 405, 434
HaeIII	GGCC	3 cut(s)	91, 371, 675
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	5 cut(s)	433, 541, 593, 736, 758
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	3 cut(s)	518, 736, 761
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	2 cut(s)	213, 421
Hpy166II	GTNNAC	4 cut(s)	483, 543, 646, 779
Hpy188I	TCNGA	2 cut(s)	565, 766
Hpy188III	TCNNGA	2 cut(s)	476, 911
Hpy8I	GTNNAC	4 cut(s)	483, 543, 646, 779
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	5 cut(s)	361, 508, 620, 662, 864
HpyCH4III	ACNGT	3 cut(s)	46, 744, 752
HpyCH4V	TGCA	7 cut(s)	211, 392, 433, 618, 758, 904, 918
HpyF10VI	GCNNNNNNNGC	5 cut(s)	208, 638, 672, 699, 852
HpyF3I	CTNAG	2 cut(s)	258, 686
Hsp92II	CATG	5 cut(s)	433, 541, 593, 736, 758
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	585
LguI	GCTCTTC	2 cut(s)	443, 717
LmnI	GCTCC	2 cut(s)	61, 629
LpnPI	CCDG	8 cut(s)	3, 52, 150, 164, 237, 237, 366, 378
Lsp1109I	GCAGC	3 cut(s)	180, 391, 445
LweI	GCATC	1 cut(s)	913
MaeI	CTAG	3 cut(s)	32, 387, 447
MaeIII	GTNAC	3 cut(s)	13, 109, 247
MalI	GATC	1 cut(s)	587
MboI	GATC	1 cut(s)	585
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	2 cut(s)	104, 114
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	789
MnlI	CCTC	7 cut(s)	70, 102, 452, 587, 686, 819, 898
MseI	TTAA	3 cut(s)	302, 345, 943
MslI	CAYNNNNRTG	1 cut(s)	488
MspI	CCGG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	920
MwoI	GCNNNNNNNGC	5 cut(s)	208, 638, 672, 699, 852
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	1 cut(s)	585
NlaIII	CATG	5 cut(s)	433, 541, 593, 736, 758
NlaIV	GGNNCC	3 cut(s)	90, 283, 674
NmuCI	GTSAC	2 cut(s)	109, 247
NspI	RCATGY	2 cut(s)	433, 541
PaqCI	CACCTGC	1 cut(s)	383
PceI	AGGCCT	1 cut(s)	371
PciI	ACATGT	1 cut(s)	537
PciSI	GCTCTTC	2 cut(s)	443, 717
PcsI	WCGNNNNNNNCGW	2 cut(s)	736, 809
PctI	GAATGC	1 cut(s)	920
PfeI	GAWTC	2 cut(s)	736, 761
PkrI	GCNGC	3 cut(s)	170, 406, 435
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PpuMI	RGGWCCY	1 cut(s)	383
PscI	ACATGT	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	383
PspN4I	GGNNCC	3 cut(s)	90, 283, 674
PspPI	GGNCC	3 cut(s)	89, 383, 673
PspPPI	RGGWCCY	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	1 cut(s)	488
SalI	GTCGAC	1 cut(s)	541
SapI	GCTCTTC	2 cut(s)	443, 717
SaqAI	TTAA	3 cut(s)	302, 345, 943
SatI	GCNGC	3 cut(s)	169, 405, 434
Sau3AI	GATC	1 cut(s)	585
Sau96I	GGNCC	3 cut(s)	89, 383, 673
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	913
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	488
Sse9I	AATT	2 cut(s)	104, 114
SseBI	AGGCCT	1 cut(s)	371
SsiI	CCGC	3 cut(s)	407, 546, 649
SspMI	CTAG	3 cut(s)	32, 387, 447
StuI	AGGCCT	1 cut(s)	371
TaaI	ACNGT	3 cut(s)	46, 744, 752
TaqI	TCGA	5 cut(s)	134, 451, 534, 542, 739
TasI	AATT	2 cut(s)	104, 114
TatI	WGTACW	1 cut(s)	744
TfiI	GAWTC	2 cut(s)	736, 761
Tru1I	TTAA	3 cut(s)	302, 345, 943
Tru9I	TTAA	3 cut(s)	302, 345, 943
TscAI	CASTG	2 cut(s)	262, 625
TseFI	GTSAC	2 cut(s)	109, 247
TseI	GCWGC	3 cut(s)	168, 404, 433
Tsp45I	GTSAC	2 cut(s)	109, 247
TspDTI	ATGAA	1 cut(s)	620
TspRI	CASTG	2 cut(s)	262, 625
VpaK11BI	GGWCC	1 cut(s)	383
XagI	CCTNNNNNAGG	2 cut(s)	228, 390
XceI	RCATGY	2 cut(s)	433, 541
XmiI	GTMKAC	2 cut(s)	542, 645
XspI	CTAG	3 cut(s)	32, 387, 447
ZrmI	AGTACT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.