Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

9738748 .. 9742573

Gene Structure 3826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47188

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

ATGAATATAGCCTTGCTTCTGCTTTTTTTGGTTTTCTGTAAGGGTTCTCATACTAGTGGACTAATTACTAATGTCACTACAAGACCTGATGTATTGAACATTGGTTCGATGTTCACTTTCGATTCTGTCATTGGGAAAATTGCAAAACTTGCCATAACACTTGCGGTTGAAGATGTCAATTCCAATCCCAACATTCTCAATGGCACAAAGCTCTCACTCAAAATGCATAACACCAAATCGAGTGACTTCCTCGGAATCGTTGAAGCTTTGCAGTTTATGGAGAATGACACAGTGGCCATAATTGGCCCCCAATTCTCAGCTACAGCTCACGTTATCTCACACATAGCAAATGAGCTCCAAGTGCCTTTGTTATCATTTGCAGCAACAGATCCTACTCTATCTCCTGTTCAGTTCCCTTTCTTGGTTCGAACAACGCGAAGCGATCTCTTTCAGATGACAGCAGTGGTAGACCTTGTTGTTCACTACGAGTGGCGAGATGTCATAGCAATATATGTAGATGACGATTTTGGAAGAAATGCTATTGCTTCCTTGGGTGATAAGCTAGCCGAAAAGCGCTGCAAGATTTCATACAAAGTTCCTTTGACTCCCACAGCAACAAAAGAGGAGATCAGAAAGGCACTGATCAGTGTGTCTACAATGGAGTCTAGGATTCTGATCCTGCACATTTATACTAGTTGGGGTCTGCAAGTACTTGAAGAAGCGCAGGAGCAGAAGATGATGGATAGTGGATATGTGTGGATTGCTACTGATTGGTTCTCCACCATTTTAGATACAGATCCTTCTCTCCCTCTAGTGCAAACAAACAACATCCAAGGCGTTCTCACATTGCGAATGTACACACCCGATTCACAACTCAAGACGGAATTCAAGTCGAGATGGAGCAACTTGACTAAGGCAAGAAGATTACTTAATGACACTTCTTTTGGTTTAAATACATATGGCCTATACGCGTATGACTCGGTGTTGCTTCTTGCTCAAGCAATTGAATCATTTTTCGCTAATGGGTGGAACATTTCCTTTTCAAATGACACAAATTTGAGGGAGTTAAGTGGTGGGAAGTTGAATCTTGATGCTTTGAACATTTTCAATGGAGGCAGGCAATTGCTCAAAAGCATTTTAGAGGTTAACACAACTGGCTTAACAGGACCGATTAAGTTTGATGCTGATGGGAACTTACTCAATCCTGCATTTGAAGTCATCAATGTGATTGGCACAGGGACTAGAACTATTGGCTATTGGTCTAACTCCTCTGGGTTAAATGTTCTTCCTCCAGAAAAGCTCCAAATGAAGATGCAGACTAATGGCTCCAGCCCCGGTACTCAAAAACTGTACAGTGTGATCTGGCCTGGACAAACAACTGAGAAGCCTCGCGGATGGGTTTTCCCTTACAATGGCAGAAAGCTCAGGATTGGAGTCCCCCATCGAGTTAGCTATCCCGAGTTTGTGGGTATAAAAGGCACTGATTTCAGTGGTTACTGCATTGAGGTCTTTCAGGCTGCACTAAATGAGTTACCATATGGTGTACCATACAAGTATATCCCTTTTGGAGATGGTATCAAAAACCCAGAAAACAATGACCTTCTCCACAGAGTCCAAATTGGGGAGTTTGATGGTGTAGTAGGAGATATTACAATCACTACTAACAGAACAAAGATGGTAGATTTTACTCAACCTTATATTGAGTCTGGGCTAGTTGTGGTTGCTCCAATAAGGAAGATGGACTCCAGTGCTTGGGCTTTCCTGAGACCCTTTACTCCAATGATGTGGGGTGTTACTGGTGTTTTCTTCCTAGTTGTGGGAACAGTTGTTTGGATTTTGGAGCGCAGGACTAATGAGGATTTTAGGGGGCCTCCCAAAAGACAATTGGTCACAATTGTTTGGTTTAGCTTTTCGACTTTGTTCTTCTCCCAGAAAGAGAAAACCGGCAGCACACTTGGTCGCTTTGTGGTAATCATATGGCTATTTGTGGTACTAATACTCAACTCCAGCTACACTGCAAGCTTGACTTCGATCCTCACAGTGGAGCAACTTTCTTCACCTGTGAAAGGGATTGAAAGTTTAGCAACAGGCACTGAGCCCATTGGTTATCTAAGGGGTTCCTTTGCTGAAGCTTACTTAACCGACGAGCTGAACATACATCATAGCAGACTTGTTGCCCTTAACTCGCCGGAAGATTATGAGAAGGCCTTGAAGAAAGGTCCTAGTGCAGGTGGTGTTGCTGCAGTGATTGATGAGCGTGCTTACATGGAGCTCTTCCTCTCTAGTCGATGTGGATATAGTATTGTTGGTCAAGAGTTCACTAAAATGGGTTGGGGATTTGCCTTTTCGAGGGACTCGCCATTGGCAATCGACATGTCGACCGCCATATTGAAGCTATCGGAGAACGGAAACCTGCAAAAGATCCATGACAAGTGGCTAATGAAAAGTGCTTGCAGTGCAGAAGGAGCAAAGCAAGCAGTAGACCGTCTTCAGCTAAAGAGCTTTTGGGGCCTCTTTCTACTAAGCGGCATTGCTTGCTTTCTTGCTCTTCTTCTTTATGTTCTTCGCATGGTTCGACAGTACTACCGGCATGCAGATTCCGACATCGAGTGCTCACAATCAACAGGACGACTGAAGTCGTTTGTTTCGTTTGTAAATAAGAGGGAACAAGAAGTGAAAAGCAGTTCCAAGGGAAGAAGGACTGATAACAAAGCCTCAAATAAGATAGTGCATCATCAAGAATGCAGTAGCGATGGTTTGGACTTGACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

924

Amino Acids

102.81

Weight (kDa)

7.93

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	45 - 337	4.8e-13	Periplasmic binding protein
ANF_receptor	PF01094	49 - 411	5.3e-91	Receptor family ligand binding region
SBP_bac_3	PF00497	484 - 814	1.1e-11	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	494 - 575	1.5e-07	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	595 - 846	4e-36	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2219
Acc36I	ACCTGC	2 cut(s)	2219, 2421
AccB7I	CCANNNNNTGG	1 cut(s)	1752
AccI	GTMKAC	4 cut(s)	468, 653, 2378, 2481
AccII	CGCG	3 cut(s)	436, 971, 1392
AciI	CCGC	4 cut(s)	164, 1392, 2382, 2526
AclWI	GGATC	5 cut(s)	383, 670, 791, 2026, 2416
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	884, 1054
AcuI	CTGAAG	3 cut(s)	2148, 2474, 2654
AfaI	GTAC	7 cut(s)	711, 857, 1339, 1352, 1545, 1992, 2582
AfeI	AGCGCT	1 cut(s)	575
AfiI	CCNNNNNNNGG	9 cut(s)	421, 1412, 1621, 1752, 1816, 2041, 2066, 2228, 2349
AflIII	ACRYGT	2 cut(s)	969, 2373
AhdI	GACNNNNNGTC	1 cut(s)	1886
AhlI	ACTAGT	2 cut(s)	53, 692
AjnI	CCWGG	1 cut(s)	1366
AjuI	GAANNNNNNNTTGG	2 cut(s)	1813, 1845
Alw21I	GWGCWC	3 cut(s)	357, 2274, 2615
Alw26I	GTCTC	1 cut(s)	1759
AlwI	GGATC	5 cut(s)	383, 670, 791, 2026, 2416
AlwNI	CAGNNNCTG	1 cut(s)	2093
Ama87I	CYCGRG	1 cut(s)	1457
Aor51HI	AGCGCT	1 cut(s)	575
AoxI	GGCC	7 cut(s)	294, 304, 961, 1364, 1868, 2205, 2509
ApeKI	GCWGC	5 cut(s)	380, 576, 1517, 1947, 2240
ApoI	RAATTY	2 cut(s)	884, 1054
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
Asp700I	GAANNNNTTC	1 cut(s)	1103
AspLEI	GCGC	3 cut(s)	576, 724, 1845
AspS9I	GGNCC	5 cut(s)	305, 1166, 1868, 2219, 2509
AsuC2I	CCSGG	1 cut(s)	1335
AsuHPI	GGTGA	2 cut(s)	566, 2049
AsuII	TTCGAA	1 cut(s)	427
AsuNHI	GCTAGC	1 cut(s)	562
AvaI	CYCGRG	1 cut(s)	1457
AvaII	GGWCC	2 cut(s)	1166, 2219
BalI	TGGCCA	1 cut(s)	296
BanII	GRGCYC	3 cut(s)	357, 2100, 2274
BarI	GAAGNNNNNNTAC	2 cut(s)	2472, 2504
BbsI	GAAGAC	1 cut(s)	2480
Bbv12I	GWGCWC	3 cut(s)	357, 2274, 2615
BbvI	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
BciT130I	CCWGG	1 cut(s)	1368
BclI	TGATCA	1 cut(s)	642
BcnI	CCSGG	1 cut(s)	1335
BcoDI	GTCTC	1 cut(s)	1759
BcuI	ACTAGT	2 cut(s)	53, 692
BfmI	CTRYAG	2 cut(s)	321, 2241
BfoI	RGCGCY	1 cut(s)	577
BfuAI	ACCTGC	2 cut(s)	2219, 2421
BisI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
BlsI	GCNGC	6 cut(s)	382, 578, 1519, 1949, 2242, 2528
BmcAI	AGTACT	2 cut(s)	711, 2582
Bme1390I	CCNGG	2 cut(s)	1335, 1368
Bme18I	GGWCC	2 cut(s)	1166, 2219
BmeRI	GACNNNNNGTC	1 cut(s)	1886
BmeT110I	CYCGRG	1 cut(s)	1457
BmgT120I	GGNCC	5 cut(s)	305, 1166, 1868, 2219, 2509
BmiI	GGNNCC	5 cut(s)	307, 1327, 1869, 2119, 2510
BmrFI	CCNGG	2 cut(s)	1335, 1368
BmsI	GCATC	4 cut(s)	1081, 1171, 1302, 2740
BmtI	GCTAGC	1 cut(s)	566
BoxI	GACNNNNGTC	1 cut(s)	2635
BpiI	GAAGAC	1 cut(s)	2480
BpmI	CTGGAG	4 cut(s)	1275, 1312, 1729, 1990
Bpu10I	CCTNAGC	1 cut(s)	1424
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	2 cut(s)	860, 981
BpuMI	CCSGG	1 cut(s)	1335
BsaBI	GATNNNNATC	2 cut(s)	674, 795
BsaI	GGTCTC	1 cut(s)	1759
BsaJI	CCNNGG	5 cut(s)	250, 549, 832, 1333, 2688
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	9 cut(s)	421, 1412, 1621, 1752, 1816, 2041, 2066, 2228, 2349
Bse118I	RCCGGY	2 cut(s)	1943, 2586
Bse1I	ACTGG	3 cut(s)	1159, 1746, 1801
Bse3DI	GCAATG	2 cut(s)	845, 2529
Bse8I	GATNNNNATC	2 cut(s)	674, 795
BseBI	CCWGG	1 cut(s)	1368
BseDI	CCNNGG	5 cut(s)	250, 549, 832, 1333, 2688
BseGI	GGATG	2 cut(s)	828, 1400
BseJI	GATNNNNATC	2 cut(s)	674, 795
BseLI	CCNNNNNNNGG	9 cut(s)	421, 1412, 1621, 1752, 1816, 2041, 2066, 2228, 2349
BseMI	GCAATG	2 cut(s)	845, 2529
BseMII	CTCAG	5 cut(s)	330, 1371, 1438, 1754, 2085
BseNI	ACTGG	3 cut(s)	1159, 1746, 1801
BseRI	GAGGAG	2 cut(s)	638, 1258
BseXI	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
BsgI	GTGCAG	4 cut(s)	665, 1503, 2247, 2478
Bsh1236I	CGCG	3 cut(s)	436, 971, 1392
Bsh1285I	CGRYCG	1 cut(s)	2382
BshFI	GGCC	7 cut(s)	296, 306, 963, 1366, 1870, 2207, 2511
BsiEI	CGRYCG	1 cut(s)	2382
BsiHKAI	GWGCWC	3 cut(s)	357, 2274, 2615
BsiHKCI	CYCGRG	1 cut(s)	1457
BsiSI	CCGG	4 cut(s)	1335, 1944, 2189, 2587
BslFI	GGGAC	3 cut(s)	1252, 1421, 2366
BslI	CCNNNNNNNGG	9 cut(s)	421, 1412, 1621, 1752, 1816, 2041, 2066, 2228, 2349
BsmAI	GTCTC	1 cut(s)	1759
BsmFI	GGGAC	3 cut(s)	1252, 1421, 2366
BsmI	GAATGC	1 cut(s)	2747
BsnI	GGCC	7 cut(s)	296, 306, 963, 1366, 1870, 2207, 2511
Bso31I	GGTCTC	1 cut(s)	1759
BsoBI	CYCGRG	1 cut(s)	1457
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	4 cut(s)	357, 2100, 2274, 2615
Bsp1407I	TGTACA	2 cut(s)	855, 1350
Bsp143I	GATC	9 cut(s)	388, 442, 627, 642, 675, 796, 1359, 2031, 2421
BspACI	CCGC	4 cut(s)	164, 1392, 2382, 2526
BspANI	GGCC	7 cut(s)	296, 306, 963, 1366, 1870, 2207, 2511
BspCNI	CTCAG	5 cut(s)	329, 1372, 1437, 1755, 2086
BspFNI	CGCG	3 cut(s)	436, 971, 1392
BspLI	GGNNCC	5 cut(s)	307, 1327, 1869, 2119, 2510
BspMAI	CTGCAG	1 cut(s)	2245
BspMI	ACCTGC	2 cut(s)	2219, 2421
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	5 cut(s)	383, 670, 791, 2026, 2416
BspQI	GCTCTTC	2 cut(s)	2279, 2553
BspT104I	TTCGAA	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	1759
BsrDI	GCAATG	2 cut(s)	845, 2529
BsrFI	RCCGGY	2 cut(s)	1943, 2586
BsrGI	TGTACA	2 cut(s)	855, 1350
BsrI	ACTGG	3 cut(s)	1159, 1746, 1801
BssAI	RCCGGY	2 cut(s)	1943, 2586
BssECI	CCNNGG	5 cut(s)	250, 549, 832, 1333, 2688
BssMI	GATC	9 cut(s)	388, 442, 627, 642, 675, 796, 1359, 2031, 2421
BssT1I	CCWWGG	3 cut(s)	549, 832, 2688
Bst2UI	CCWGG	1 cut(s)	1368
Bst4CI	ACNGT	7 cut(s)	292, 1350, 1355, 1825, 2041, 2486, 2580
Bst6I	CTCTTC	2 cut(s)	2279, 2553
BstAPI	GCANNNNNTGC	2 cut(s)	149, 2535
BstAUI	TGTACA	2 cut(s)	855, 1350
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	8 cut(s)	564, 1118, 2020, 2259, 2452, 2475, 2536, 2592
BstDEI	CTNAG	8 cut(s)	316, 912, 1380, 1424, 1763, 2094, 2111, 2522
BstENI	CCTNNNNNAGG	3 cut(s)	2064, 2226, 2347
BstF5I	GGATG	2 cut(s)	828, 1400
BstFNI	CGCG	3 cut(s)	436, 971, 1392
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	3 cut(s)	576, 724, 1845
BstKTI	GATC	9 cut(s)	391, 445, 630, 645, 678, 799, 1362, 2034, 2424
BstMAI	GTCTC	1 cut(s)	1759
BstMBI	GATC	9 cut(s)	388, 442, 627, 642, 675, 796, 1359, 2031, 2421
BstMCI	CGRYCG	1 cut(s)	2382
BstMWI	GCNNNNNNNGC	7 cut(s)	149, 361, 2456, 2465, 2474, 2508, 2535
BstNI	CCWGG	1 cut(s)	1368
BstNSI	RCATGY	2 cut(s)	2377, 2594
BstPAI	GACNNNNGTC	1 cut(s)	2635
BstSCI	CCNGG	2 cut(s)	1333, 1366
BstSFI	CTRYAG	2 cut(s)	321, 2241
BstUI	CGCG	3 cut(s)	436, 971, 1392
BstV1I	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
BstV2I	GAAGAC	1 cut(s)	2480
BstX2I	RGATCY	3 cut(s)	388, 796, 2421
BstXI	CCANNNNNNTGG	1 cut(s)	1785
BstYI	RGATCY	3 cut(s)	388, 796, 2421
BsuRI	GGCC	7 cut(s)	296, 306, 963, 1366, 1870, 2207, 2511
BtgZI	GCGATG	1 cut(s)	2766
BtsCI	GGATG	2 cut(s)	828, 1400
BtsI	GCAGTG	4 cut(s)	468, 2013, 2250, 2461
BveI	ACCTGC	2 cut(s)	2219, 2421
Cac8I	GCNNGC	8 cut(s)	564, 1118, 2020, 2259, 2452, 2475, 2536, 2592
CaiI	CAGNNNCTG	1 cut(s)	2093
CfoI	GCGC	3 cut(s)	576, 724, 1845
Cfr10I	RCCGGY	2 cut(s)	1943, 2586
Cfr13I	GGNCC	5 cut(s)	305, 1166, 1868, 2219, 2509
Csp6I	GTAC	7 cut(s)	710, 856, 1338, 1351, 1544, 1991, 2581
CviAII	CATG	5 cut(s)	2266, 2374, 2426, 2569, 2591
CviQI	GTAC	7 cut(s)	710, 856, 1338, 1351, 1544, 1991, 2581
DdeI	CTNAG	8 cut(s)	316, 912, 1380, 1424, 1763, 2094, 2111, 2522
DpnI	GATC	9 cut(s)	390, 444, 629, 644, 677, 798, 1361, 2033, 2423
DpnII	GATC	9 cut(s)	388, 442, 627, 642, 675, 796, 1359, 2031, 2421
DraI	TTTAAA	1 cut(s)	951
DriI	GACNNNNNGTC	1 cut(s)	1886
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	2 cut(s)	2279, 2553
Eam1105I	GACNNNNNGTC	1 cut(s)	1886
EarI	CTCTTC	2 cut(s)	2279, 2553
Ecl136II	GAGCTC	2 cut(s)	355, 2272
Eco130I	CCWWGG	3 cut(s)	549, 832, 2688
Eco147I	AGGCCT	1 cut(s)	2207
Eco24I	GRGCYC	3 cut(s)	357, 2100, 2274
Eco31I	GGTCTC	1 cut(s)	1759
Eco47I	GGWCC	2 cut(s)	1166, 2219
Eco47III	AGCGCT	1 cut(s)	575
Eco53kI	GAGCTC	2 cut(s)	355, 2272
Eco57I	CTGAAG	3 cut(s)	2148, 2474, 2654
Eco88I	CYCGRG	1 cut(s)	1457
EcoICRI	GAGCTC	2 cut(s)	355, 2272
EcoNI	CCTNNNNNAGG	3 cut(s)	2064, 2226, 2347
EcoO109I	RGGNCCY	3 cut(s)	1868, 2219, 2509
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	1366
EcoT14I	CCWWGG	3 cut(s)	549, 832, 2688
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	3 cut(s)	357, 2100, 2274
ErhI	CCWWGG	3 cut(s)	549, 832, 2688
FaeI	CATG	5 cut(s)	2269, 2377, 2429, 2572, 2594
FalI	AAGNNNNNCTT	2 cut(s)	2011, 2043
FaqI	GGGAC	3 cut(s)	1252, 1421, 2366
FatI	CATG	5 cut(s)	2265, 2373, 2425, 2568, 2590
FauNDI	CATATG	3 cut(s)	958, 1537, 1976
FbaI	TGATCA	1 cut(s)	642
FblI	GTMKAC	4 cut(s)	468, 653, 2378, 2481
Fnu4HI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
FokI	GGATG	2 cut(s)	815, 1407
FriOI	GRGCYC	3 cut(s)	357, 2100, 2274
Fsp4HI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
GlaI	GCGC	3 cut(s)	575, 723, 1844
GluI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
GsuI	CTGGAG	4 cut(s)	1275, 1312, 1729, 1990
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	7 cut(s)	296, 306, 963, 1366, 1870, 2207, 2511
HapII	CCGG	4 cut(s)	1335, 1944, 2189, 2587
HhaI	GCGC	3 cut(s)	576, 724, 1845
Hin1II	CATG	5 cut(s)	2269, 2377, 2429, 2572, 2594
Hin6I	GCGC	3 cut(s)	574, 722, 1843
HinP1I	GCGC	3 cut(s)	574, 722, 1843
HincII	GTYRAC	2 cut(s)	1147, 2379
HindII	GTYRAC	2 cut(s)	1147, 2379
HindIII	AAGCTT	3 cut(s)	264, 2020, 2130
HpaI	GTTAAC	1 cut(s)	1147
HpaII	CCGG	4 cut(s)	1335, 1944, 2189, 2587
HphI	GGTGA	2 cut(s)	566, 2049
Hpy188I	TCNGA	6 cut(s)	254, 453, 632, 675, 2401, 2602
Hpy188III	TCNNGA	9 cut(s)	877, 894, 1088, 1292, 1426, 1457, 1762, 2312, 2738
Hpy99I	CGWCG	1 cut(s)	2147
HpyAV	CCTTC	5 cut(s)	810, 1610, 2197, 2456, 2691
HpyCH4III	ACNGT	7 cut(s)	292, 1350, 1355, 1825, 2041, 2486, 2580
HpyCH4IV	ACGT	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	7 cut(s)	149, 361, 2456, 2465, 2474, 2508, 2535
HpyF3I	CTNAG	8 cut(s)	316, 912, 1380, 1424, 1763, 2094, 2111, 2522
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	2269, 2377, 2429, 2572, 2594
HspAI	GCGC	3 cut(s)	574, 722, 1843
Ksp22I	TGATCA	1 cut(s)	642
KspAI	GTTAAC	1 cut(s)	1147
Kzo9I	GATC	9 cut(s)	388, 442, 627, 642, 675, 796, 1359, 2031, 2421
LguI	GCTCTTC	2 cut(s)	2279, 2553
Lsp1109I	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
LweI	GCATC	4 cut(s)	1081, 1171, 1302, 2740
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	6 cut(s)	73, 242, 1493, 1530, 1792, 1888
MalI	GATC	9 cut(s)	390, 444, 629, 644, 677, 798, 1361, 2033, 2423
MboI	GATC	9 cut(s)	388, 442, 627, 642, 675, 796, 1359, 2031, 2421
MfeI	CAATTG	4 cut(s)	1002, 1121, 1883, 1893
MflI	RGATCY	3 cut(s)	388, 796, 2421
MhlI	GDGCHC	4 cut(s)	357, 2100, 2274, 2615
MlsI	TGGCCA	1 cut(s)	296
MluI	ACGCGT	1 cut(s)	969
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	8 cut(s)	598, 671, 971, 1443, 1620, 1712, 1736, 2348
MmeI	TCCRAC	1 cut(s)	2625
Mox20I	TGGCCA	1 cut(s)	296
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	1103
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	9 cut(s)	930, 950, 1067, 1146, 1160, 1173, 1277, 2138, 2181
MslI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	4 cut(s)	1335, 1944, 2189, 2587
MspR9I	CCNGG	2 cut(s)	1335, 1368
MunI	CAATTG	4 cut(s)	1002, 1121, 1883, 1893
Mva1269I	GAATGC	1 cut(s)	2747
MvaI	CCWGG	1 cut(s)	1368
MvnI	CGCG	3 cut(s)	436, 971, 1392
MwoI	GCNNNNNNNGC	7 cut(s)	149, 361, 2456, 2465, 2474, 2508, 2535
NciI	CCSGG	1 cut(s)	1335
NdeI	CATATG	3 cut(s)	958, 1537, 1976
NdeII	GATC	9 cut(s)	388, 442, 627, 642, 675, 796, 1359, 2031, 2421
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	5 cut(s)	2269, 2377, 2429, 2572, 2594
NlaIV	GGNNCC	5 cut(s)	307, 1327, 1869, 2119, 2510
NmuCI	GTSAC	3 cut(s)	73, 242, 1888
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	2 cut(s)	2377, 2594
NspV	TTCGAA	1 cut(s)	427
PaeI	GCATGC	1 cut(s)	2594
PaqCI	CACCTGC	1 cut(s)	2219
PceI	AGGCCT	1 cut(s)	2207
PciI	ACATGT	1 cut(s)	2373
PciSI	GCTCTTC	2 cut(s)	2279, 2553
PcsI	WCGNNNNNNNCGW	3 cut(s)	433, 2572, 2645
PctI	GAATGC	1 cut(s)	2747
PdmI	GAANNNNTTC	1 cut(s)	1103
PfeI	GAWTC	7 cut(s)	122, 255, 670, 866, 1007, 1084, 2597
PflMI	CCANNNNNTGG	1 cut(s)	1752
PkrI	GCNGC	6 cut(s)	382, 578, 1519, 1949, 2242, 2528
PleI	GAGTC	8 cut(s)	598, 670, 971, 1442, 1619, 1711, 1736, 2348
PpsI	GAGTC	8 cut(s)	598, 670, 971, 1442, 1619, 1711, 1736, 2348
PpuMI	RGGWCCY	1 cut(s)	2219
PscI	ACATGT	1 cut(s)	2373
PshAI	GACNNNNGTC	1 cut(s)	2635
Psp124BI	GAGCTC	2 cut(s)	357, 2274
Psp5II	RGGWCCY	1 cut(s)	2219
Psp6I	CCWGG	1 cut(s)	1366
PspGI	CCWGG	1 cut(s)	1366
PspN4I	GGNNCC	5 cut(s)	307, 1327, 1869, 2119, 2510
PspPI	GGNCC	5 cut(s)	305, 1166, 1868, 2219, 2509
PspPPI	RGGWCCY	1 cut(s)	2219
PstI	CTGCAG	1 cut(s)	2245
PstNI	CAGNNNCTG	1 cut(s)	2093
PsuI	RGATCY	3 cut(s)	388, 796, 2421
RsaI	GTAC	7 cut(s)	711, 857, 1339, 1352, 1545, 1992, 2582
RsaNI	GTAC	7 cut(s)	710, 856, 1338, 1351, 1544, 1991, 2581
RseI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
SacI	GAGCTC	2 cut(s)	357, 2274
SalI	GTCGAC	1 cut(s)	2377
SapI	GCTCTTC	2 cut(s)	2279, 2553
SaqAI	TTAA	9 cut(s)	930, 950, 1067, 1146, 1160, 1173, 1277, 2138, 2181
SatI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
Sau3AI	GATC	9 cut(s)	388, 442, 627, 642, 675, 796, 1359, 2031, 2421
Sau96I	GGNCC	5 cut(s)	305, 1166, 1868, 2219, 2509
ScaI	AGTACT	2 cut(s)	711, 2582
SchI	GAGTC	8 cut(s)	598, 671, 971, 1443, 1620, 1712, 1736, 2348
ScrFI	CCNGG	2 cut(s)	1335, 1368
SduI	GDGCHC	4 cut(s)	357, 2100, 2274, 2615
SfaNI	GCATC	4 cut(s)	1081, 1171, 1302, 2740
SfcI	CTRYAG	2 cut(s)	321, 2241
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	2 cut(s)	1166, 2219
SmiMI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
SmlI	CTYRAG	2 cut(s)	875, 996
SmoI	CTYRAG	2 cut(s)	875, 996
SpeI	ACTAGT	2 cut(s)	53, 692
SphI	GCATGC	1 cut(s)	2594
SseBI	AGGCCT	1 cut(s)	2207
SsiI	CCGC	4 cut(s)	164, 1392, 2382, 2526
SstI	GAGCTC	2 cut(s)	357, 2274
StuI	AGGCCT	1 cut(s)	2207
StyD4I	CCNGG	2 cut(s)	1333, 1366
StyI	CCWWGG	3 cut(s)	549, 832, 2688
TaaI	ACNGT	7 cut(s)	292, 1350, 1355, 1825, 2041, 2486, 2580
TaiI	ACGT	1 cut(s)	333
TaqII	GACCGA	1 cut(s)	1183
TatI	WGTACW	4 cut(s)	709, 855, 1350, 2580
TauI	GCSGC	1 cut(s)	2529
TfiI	GAWTC	7 cut(s)	122, 255, 670, 866, 1007, 1084, 2597
Tru1I	TTAA	9 cut(s)	930, 950, 1067, 1146, 1160, 1173, 1277, 2138, 2181
Tru9I	TTAA	9 cut(s)	930, 950, 1067, 1146, 1160, 1173, 1277, 2138, 2181
TseFI	GTSAC	3 cut(s)	73, 242, 1888
TseI	GCWGC	5 cut(s)	380, 576, 1517, 1947, 2240
Tsp45I	GTSAC	3 cut(s)	73, 242, 1888
TspDTI	ATGAA	4 cut(s)	17, 576, 1322, 2456
TspGWI	ACGGA	2 cut(s)	896, 2421
Van91I	CCANNNNNTGG	1 cut(s)	1752
VpaK11BI	GGWCC	2 cut(s)	1166, 2219
XagI	CCTNNNNNAGG	3 cut(s)	2064, 2226, 2347
XapI	RAATTY	2 cut(s)	884, 1054
XceI	RCATGY	2 cut(s)	2377, 2594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1882
XmiI	GTMKAC	4 cut(s)	468, 653, 2378, 2481
XmnI	GAANNNNTTC	1 cut(s)	1103
ZrmI	AGTACT	2 cut(s)	711, 2582
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.