Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001053

Physical Location & Seq

Genomic Coordinates Reverse (-)

14626241 .. 14627041

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATCCTAAACATACACAAGTCAAGACTTGTGCCTCTTAACTCCCCAGAAGAATATGAGAAGGCCTTGAAAGATGGTCCTAATGCAGGCGGTGTTGCTGCAGTGATTGATGAGCGTGCATACATGGAGCTCTTCCTCTCCGTTCGATGTGGATATAGTATCGTAGGTCAAGAATTCACCAAAATGGGCTGGGGTTTTGCCTTTCCAAGGGACTCACCTCTTGCAATTGACATGTCAACCGCGGTGTTGAAACTATCTGAGAAGGGAGATCTTCAAAAGATTCATGACAAATGGCTGATGAAAAGTGCTTGCAGTGCAGAAGGACCAAAGCAAGCTGTAGACCGCCTTCCGACGAGTAGCTTCTGGGGCCTCTTTCTGATGAGCGGCACAGCTTGCTTTCTTGCTCTTGTTCTTCATGTTCTTCACATGGCGCACCAGTACTACAAGCATTATGATTCCGACTGCGAGAGCTCACAAGCAAAACGCCTTCGATCCTTCGTTTCATTTGTAAATACAAGGGAAGAGGAAGTGAAAAGTAGAACCAAGAGGAGGAGGACTGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

189

Amino Acids

21.31

Weight (kDa)

9.01

Isoelectric Point (pI)

68.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51480 AT3G51480 AT3G51480 AT3G51480
fragaria_vesca	FvH4_1g10192 FvH4_1g10210 FvH4_1g10210
malus_domestica	MD15G1229300.v1.1 MD15G1229400.v1.1 MD15G1229500.v1.1 MD15G1229600.v1.1
prunus_persica	Prupe.7G184100_v2.0.a1 Prupe.7G184300_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184400_v2.0.a1 Prupe.7G184500_v2.0.a1
pyrus_communis	pycom15g20440 pycom15g20470
rosa_chinensis	RchiOBHm_Chr1g0342071 RchiOBHm_Chr1g0342111 RchiOBHm_Chr1g0342121 RchiOBHm_Chr1g0342221 RchiOBHm_Chr2g0097001 RchiOBHm_Chr2g0097011
rosa_laevigata	RLG00000016693 RLG00000016695 RLG00000016696 RLG00000029615
rosa_multiflora	Rmu_sc0005782.1_g000005 Rmu_sc0006853.1_g000008
rosa_roxburghii	Rroxscaffold_1G00033430 Rroxscaffold_2G00145050 Rroxscaffold_2G00145070 Rroxscaffold_2G00145080 Rroxscaffold_2G00145090 Rroxscaffold_4G00317590 Rroxscaffold_4G00317600
rosa_rugosa	Rorug01G0152800.1 Rorug01G0153000.1 Rorug02G0062800 Rorug02G0063000
rosa_samantha	Rh1AG167500 Rh1AG167800 Rh1BG134100 Rh1BG134200 Rh1CG155400 Rh1DG168300 Rh1DG168400 Rh2AG110600 Rh2BG112400 Rh2BG112500 Rh2CG114500 Rh2CG114600 Rh2DG113700 Rh2DG113800
rosa_wichuraiana	Rw1G013960 Rw2G008560 Rw2G008580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	242
AciI	CCGC	5 cut(s)	90, 240, 242, 343, 384
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	3 cut(s)	86, 207, 549
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	70, 250, 275
AluBI	AGCT	5 cut(s)	130, 335, 360, 392, 471
AluI	AGCT	5 cut(s)	130, 335, 360, 392, 471
Alw21I	GWGCWC	2 cut(s)	132, 473
AlwI	GGATC	1 cut(s)	486
AoxI	GGCC	2 cut(s)	63, 367
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	77, 323, 367
AsuHPI	GGTGA	2 cut(s)	169, 207
AvaII	GGWCC	2 cut(s)	77, 323
BanII	GRGCYC	2 cut(s)	132, 473
BarI	GAAGNNNNNNTAC	2 cut(s)	330, 362
Bbv12I	GWGCWC	2 cut(s)	132, 473
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	68
BfmI	CTRYAG	2 cut(s)	99, 336
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	2 cut(s)	99, 385
BlsI	GCNGC	2 cut(s)	100, 386
BmcAI	AGTACT	1 cut(s)	440
Bme18I	GGWCC	2 cut(s)	77, 323
BmgT120I	GGNCC	3 cut(s)	77, 323, 367
BmiI	GGNNCC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	206, 240
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 207, 549
Bse1I	ACTGG	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	206, 240
BseLI	CCNNNNNNNGG	3 cut(s)	86, 207, 549
BseMII	CTCAG	2 cut(s)	249, 549
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	2 cut(s)	562, 565
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	65, 369
BsiHKAI	GWGCWC	2 cut(s)	132, 473
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	3 cut(s)	86, 207, 549
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	65, 369
Bsp1286I	GDGCHC	2 cut(s)	132, 473
Bsp143I	GATC	3 cut(s)	3, 268, 491
BspACI	CCGC	5 cut(s)	90, 240, 242, 343, 384
BspANI	GGCC	2 cut(s)	65, 369
BspCNI	CTCAG	2 cut(s)	250, 550
BspFNI	CGCG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	368
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	206, 240
BssMI	GATC	3 cut(s)	3, 268, 491
BssT1I	CCWWGG	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	137, 516
BstAPI	GCANNNNNTGC	1 cut(s)	393
BstC8I	GCNNGC	5 cut(s)	88, 117, 310, 333, 394
BstDEI	CTNAG	2 cut(s)	258, 558
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	2 cut(s)	84, 205
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	3 cut(s)	6, 271, 494
BstMBI	GATC	3 cut(s)	3, 268, 491
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 366, 393
BstNSI	RCATGY	1 cut(s)	235
BstSFI	CTRYAG	2 cut(s)	99, 336
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	65, 369
BtgI	CCRYGG	1 cut(s)	240
BtsI	GCAGTG	2 cut(s)	108, 319
BtsIMutI	CAGTG	2 cut(s)	108, 319
Cac8I	GCNNGC	5 cut(s)	88, 117, 310, 333, 394
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	3 cut(s)	77, 323, 367
Cfr42I	CCGCGG	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	5 cut(s)	124, 232, 284, 416, 427
CviJI	RGCY	9 cut(s)	65, 130, 189, 295, 335, 360, 369, 392, 471
CviKI_1	RGCY	9 cut(s)	65, 130, 189, 295, 335, 360, 369, 392, 471
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	2 cut(s)	258, 558
DpnI	GATC	3 cut(s)	5, 270, 493
DpnII	GATC	3 cut(s)	3, 268, 491
Eam1104I	CTCTTC	2 cut(s)	137, 516
EarI	CTCTTC	2 cut(s)	137, 516
Ecl136II	GAGCTC	2 cut(s)	130, 471
Eco130I	CCWWGG	1 cut(s)	206
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	2 cut(s)	132, 473
Eco47I	GGWCC	2 cut(s)	77, 323
Eco53kI	GAGCTC	2 cut(s)	130, 471
EcoICRI	GAGCTC	2 cut(s)	130, 471
EcoNI	CCTNNNNNAGG	2 cut(s)	84, 205
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	2 cut(s)	132, 473
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	5 cut(s)	127, 235, 287, 419, 430
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	5 cut(s)	123, 231, 283, 415, 426
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	99, 385
FriOI	GRGCYC	2 cut(s)	132, 473
Fsp4HI	GCNGC	2 cut(s)	99, 385
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	2 cut(s)	99, 385
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	65, 369
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	5 cut(s)	127, 235, 287, 419, 430
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	3 cut(s)	212, 280, 455
HphI	GGTGA	2 cut(s)	169, 207
Hpy166II	GTNNAC	2 cut(s)	237, 340
Hpy188I	TCNGA	4 cut(s)	259, 351, 378, 460
Hpy188III	TCNNGA	3 cut(s)	24, 170, 284
Hpy8I	GTNNAC	2 cut(s)	237, 340
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	6 cut(s)	55, 256, 314, 356, 497, 505
HpyCH4V	TGCA	6 cut(s)	86, 101, 119, 224, 312, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 366, 393
HpyF3I	CTNAG	2 cut(s)	258, 558
Hsp92II	CATG	5 cut(s)	127, 235, 287, 419, 430
HspAI	GCGC	1 cut(s)	431
KspI	CCGCGG	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	3, 268, 491
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	5 cut(s)	60, 72, 175, 349, 449
Lsp1109I	GCAGC	1 cut(s)	85
MalI	GATC	3 cut(s)	5, 270, 493
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	3 cut(s)	3, 268, 491
MboII	GAAGA	6 cut(s)	62, 124, 263, 404, 413, 533
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	132, 473
MluCI	AATT	2 cut(s)	173, 225
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	374, 483
MnlI	CCTC	8 cut(s)	45, 146, 228, 380, 517, 540, 543, 546
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	314, 366, 393
NdeII	GATC	3 cut(s)	3, 268, 491
NlaIII	CATG	5 cut(s)	127, 235, 287, 419, 430
NlaIV	GGNNCC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	235
PagI	TCATGA	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	65
PciI	ACATGT	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	280, 455
PkrI	GCNGC	2 cut(s)	100, 386
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PscI	ACATGT	1 cut(s)	231
Psp124BI	GAGCTC	2 cut(s)	132, 473
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	3 cut(s)	77, 323, 367
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	2 cut(s)	132, 473
SacII	CCGCGG	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	2 cut(s)	99, 385
Sau3AI	GATC	3 cut(s)	3, 268, 491
Sau96I	GGNCC	3 cut(s)	77, 323, 367
ScaI	AGTACT	1 cut(s)	440
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	2 cut(s)	132, 473
SetI	ASST	7 cut(s)	132, 169, 220, 337, 362, 394, 473
SfcI	CTRYAG	2 cut(s)	99, 336
Sfr303I	CCGCGG	1 cut(s)	243
SgrBI	CCGCGG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	77, 323
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	173, 225
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	5 cut(s)	90, 240, 242, 343, 384
SstI	GAGCTC	2 cut(s)	132, 473
StuI	AGGCCT	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	206
TaqI	TCGA	2 cut(s)	145, 490
TasI	AATT	2 cut(s)	173, 225
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	280, 455
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	2 cut(s)	108, 319
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	4 cut(s)	272, 314, 404, 492
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	108, 319
VpaK11BI	GGWCC	2 cut(s)	77, 323
XagI	CCTNNNNNAGG	2 cut(s)	84, 205
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.