Rroxscaffold_2G00145090

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
82931957 .. 82952109
20153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145090.1

Sequence Viewer

Length: 1143 bp
ATGTCGACCGCCATATTGAAGCTATCGGAGAACGGAAACCTACAAAAGATCCATGACAAGTGGCTAATGAAAAGTGCTTGCAGTGCGAAGGAGCAAAGCAAGCGAGAGACCGGCTTCACTAAAGAGCTTTTGGGGCCTCTTTCTACTAAGCGGCATTGCTTGCTTTCTTGCTCTTCTTCTTTATGTTCTTCGCATGGTTCGACGCGTGTTTCTCCAGCGGGATTGAAGGCAGTCCGCGGCCTCTCCACCGTGGTTCGAATCCCACTCCTCCTATCGTCGGCAGAGCTTTCTCCGCCAACCACCTCCGCTGGCCAAACCTTCACCGGCCAAGGCTTCACCACACCACCAAGTTTCCTTCGCTCAAGCTACAACAGCGGCAAACTTCCACCGCTAACAACCATCAAAGGCAAACTGCCTCCGCTGAGCAGCGCCTCCACCGGCAAGGCTCCGCTGAGCAACGCCTCCGATGAGCAACTCCTCCTCCGGCGAGATCCGTGTTTCCGCTTACTCCGTGTTTCAGCTGAGCGAGTCTCCGCCGAGCTCCGTGTTTCCGCCCAGCGCCAACAAGCACCTCTGCTAGTGAGCTTACCGCAAGTGAGCGCCAGCGCCAACATCAGCATAAGCCAACGCCCATCACCAAACAGCCAAGTCTCCACTGAGCACCATCAAGCAAATTCTAGTCTGGTCTCCATTGAGCACCAAGTCTCCTCTACGCACCAAGAGAGAGGAGTTCAGTCTATTGAATTTACTATGGATACCTGGAGCATTGATCAGGACACCCATCACCATATTCTTTTATCAGCGCCGGCATCATCATCTGTCACCCCTTCAAAAGATGTATATACTGAGACGGACTCTGCCTCCACTTGTGCAGTCAAACTCTGGGTTTCTGTAGTGGTCAGAGCAACCAACAAAGCTAAGTCTCTAGCCCTCACACTCTATCTGCTTATCAAGTTTTATAAAAACACCACGTGCCTAGACTTTGCACAACTAGTCAGTGATAATTTGTCAAAGCATGAACCCATTGTGCTGACTGGGCATATGCCACGTAGGATGCCACATCCTTTGGATCATGTTGCCCCTAGCCTTGTTCCACGAATCGAAGGAAAAATCGACGAATCAAAGCTAAAAATGCGCGACTAG

Protein Analysis

380

Amino Acids

41.27

Weight (kDa)

9.58

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
AccI GTMKAC 1 cut(s) 5
AccII CGCG 3 cut(s) 205, 237, 1137
AclWI GGATC 3 cut(s) 43, 485, 1077
AcoI YGGCCR 2 cut(s) 310, 325
AcsI RAATTY 2 cut(s) 673, 743
AcvI CACGTG 1 cut(s) 972
AdeI CACNNNGTG 1 cut(s) 972
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 4 cut(s) 19, 226, 743, 831
AhlI ACTAGT 1 cut(s) 991
AjnI CCWGG 1 cut(s) 758
AluBI AGCT 9 cut(s) 22, 127, 286, 366, 521, 541, 585, 917, 1126
AluI AGCT 9 cut(s) 22, 127, 286, 366, 521, 541, 585, 917, 1126
Alw21I GWGCWC 3 cut(s) 543, 663, 699
Alw26I GTCTC 7 cut(s) 101, 535, 655, 691, 709, 842, 927
AlwI GGATC 3 cut(s) 43, 485, 1077
AoxI GGCC 4 cut(s) 134, 238, 310, 325
ApeKI GCWGC 1 cut(s) 426
ApoI RAATTY 2 cut(s) 673, 743
AspLEI GCGC 6 cut(s) 431, 561, 602, 608, 805, 1137
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 5 cut(s) 313, 328, 627, 776, 814
AsuII TTCGAA 1 cut(s) 256
BalI TGGCCA 1 cut(s) 312
BanII GRGCYC 1 cut(s) 543
BbrPI CACGTG 1 cut(s) 972
Bbv12I GWGCWC 3 cut(s) 543, 663, 699
BbvI GCAGC 1 cut(s) 438
BccI CCATC 4 cut(s) 407, 640, 672, 789
BciT130I CCWGG 1 cut(s) 760
BciVI GTATCC 1 cut(s) 748
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 7 cut(s) 101, 535, 655, 691, 709, 842, 927
BcuI ACTAGT 1 cut(s) 991
BfaI CTAG 7 cut(s) 578, 678, 926, 977, 992, 1083, 1141
BfmI CTRYAG 1 cut(s) 891
BfoI RGCGCY 5 cut(s) 432, 562, 603, 609, 806
BfuI GTATCC 1 cut(s) 748
BisI GCNGC 4 cut(s) 152, 238, 376, 427
BlpI GCTNAGC 3 cut(s) 422, 452, 522
BlsI GCNGC 4 cut(s) 153, 239, 377, 428
Bme1390I CCNGG 1 cut(s) 760
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 135, 447
BmrFI CCNGG 1 cut(s) 760
BmrI ACTGGG 1 cut(s) 1044
BmsI GCATC 2 cut(s) 818, 1044
BmuI ACTGGG 1 cut(s) 1044
BplI GAGNNNNNCTC 4 cut(s) 515, 547, 839, 871
BpmI CTGGAG 2 cut(s) 198, 781
Bpu1102I GCTNAGC 3 cut(s) 422, 452, 522
Bpu14I TTCGAA 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 346
BsaAI YACGTR 2 cut(s) 972, 1049
BsaI GGTCTC 2 cut(s) 101, 691
BsaJI CCNNGG 3 cut(s) 235, 249, 328
BsaXI ACNNNNNCTCC 6 cut(s) 465, 495, 689, 719, 845, 875
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse118I RCCGGY 4 cut(s) 110, 323, 437, 805
Bse1I ACTGG 1 cut(s) 1039
Bse3DI GCAATG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 760
BseDI CCNNGG 3 cut(s) 235, 249, 328
BseGI GGATG 2 cut(s) 1059, 1060
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 5 cut(s) 413, 443, 513, 648, 837
BseNI ACTGG 1 cut(s) 1039
BseRI GAGGAG 5 cut(s) 257, 467, 470, 697, 741
BseXI GCAGC 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 555
BsgI GTGCAG 1 cut(s) 891
Bsh1236I CGCG 3 cut(s) 205, 237, 1137
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 136, 240, 312, 327
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 3 cut(s) 543, 663, 699
BsiSI CCGG 5 cut(s) 111, 324, 438, 484, 806
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 7 cut(s) 101, 535, 655, 691, 709, 842, 927
BsmBI CGTCTC 1 cut(s) 842
BsnI GGCC 4 cut(s) 136, 240, 312, 327
Bso31I GGTCTC 2 cut(s) 101, 691
Bsp119I TTCGAA 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 543, 663, 699
Bsp143I GATC 4 cut(s) 48, 490, 769, 1069
Bsp1720I GCTNAGC 3 cut(s) 422, 452, 522
BspANI GGCC 4 cut(s) 136, 240, 312, 327
BspCNI CTCAG 5 cut(s) 414, 444, 514, 649, 838
BspFNI CGCG 3 cut(s) 205, 237, 1137
BspLI GGNNCC 2 cut(s) 135, 447
BspPI GGATC 3 cut(s) 43, 485, 1077
BspQI GCTCTTC 1 cut(s) 178
BspT104I TTCGAA 1 cut(s) 256
BspTNI GGTCTC 2 cut(s) 101, 691
BsrDI GCAATG 1 cut(s) 154
BsrFI RCCGGY 4 cut(s) 110, 323, 437, 805
BsrI ACTGG 1 cut(s) 1039
BssAI RCCGGY 4 cut(s) 110, 323, 437, 805
BssECI CCNNGG 3 cut(s) 235, 249, 328
BssMI GATC 4 cut(s) 48, 490, 769, 1069
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 760
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 178
BstAPI GCANNNNNTGC 1 cut(s) 160
BstBAI YACGTR 2 cut(s) 972, 1049
BstBI TTCGAA 1 cut(s) 256
BstC8I GCNNGC 6 cut(s) 79, 101, 161, 310, 604, 807
BstDEI CTNAG 7 cut(s) 147, 422, 452, 522, 657, 846, 918
BstDSI CCRYGG 2 cut(s) 235, 249
BstF5I GGATG 2 cut(s) 1059, 1060
BstFNI CGCG 3 cut(s) 205, 237, 1137
BstH2I RGCGCY 5 cut(s) 432, 562, 603, 609, 806
BstHHI GCGC 6 cut(s) 431, 561, 602, 608, 805, 1137
BstKTI GATC 4 cut(s) 51, 493, 772, 1072
BstMAI GTCTC 7 cut(s) 101, 535, 655, 691, 709, 842, 927
BstMBI GATC 4 cut(s) 48, 490, 769, 1069
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 8 cut(s) 83, 100, 133, 160, 292, 372, 1036, 1132
BstNI CCWGG 1 cut(s) 760
BstSCI CCNGG 1 cut(s) 758
BstSFI CTRYAG 1 cut(s) 891
BstUI CGCG 3 cut(s) 205, 237, 1137
BstV1I GCAGC 1 cut(s) 438
BstX2I RGATCY 2 cut(s) 48, 490
BstYI RGATCY 2 cut(s) 48, 490
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 4 cut(s) 136, 240, 312, 327
BtgI CCRYGG 2 cut(s) 235, 249
BtsCI GGATG 2 cut(s) 1059, 1060
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 3 cut(s) 88, 654, 1003
Cac8I GCNNGC 6 cut(s) 79, 101, 161, 310, 604, 807
CfoI GCGC 6 cut(s) 431, 561, 602, 608, 805, 1137
Cfr10I RCCGGY 4 cut(s) 110, 323, 437, 805
Cfr13I GGNCC 1 cut(s) 134
Cfr42I CCGCGG 1 cut(s) 238
CseI GACGC 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 1047, 1082
CviAII CATG 4 cut(s) 53, 194, 1016, 1073
DdeI CTNAG 7 cut(s) 147, 422, 452, 522, 657, 846, 918
DpnI GATC 4 cut(s) 50, 492, 771, 1071
DpnII GATC 4 cut(s) 48, 490, 769, 1069
DraIII CACNNNGTG 1 cut(s) 972
EaeI YGGCCR 2 cut(s) 310, 325
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
EciI GGCGGA 3 cut(s) 282, 523, 541
Ecl136II GAGCTC 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 543
Eco31I GGTCTC 2 cut(s) 101, 691
Eco53kI GAGCTC 1 cut(s) 541
Eco72I CACGTG 1 cut(s) 972
EcoICRI GAGCTC 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 758
EcoT14I CCWWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 842
FaeI CATG 4 cut(s) 56, 197, 1019, 1076
FatI CATG 4 cut(s) 52, 193, 1015, 1072
FauI CCCGC 1 cut(s) 211
FauNDI CATATG 1 cut(s) 1041
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 152, 238, 376, 427
FokI GGATG 2 cut(s) 1047, 1066
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 4 cut(s) 152, 238, 376, 427
FspBI CTAG 7 cut(s) 578, 678, 926, 977, 992, 1083, 1141
GlaI GCGC 6 cut(s) 430, 560, 601, 607, 804, 1136
GluI GCNGC 4 cut(s) 152, 238, 376, 427
GsaI CCCAGC 1 cut(s) 559
GsuI CTGGAG 2 cut(s) 198, 781
HaeII RGCGCY 5 cut(s) 432, 562, 603, 609, 806
HaeIII GGCC 4 cut(s) 136, 240, 312, 327
HapII CCGG 5 cut(s) 111, 324, 438, 484, 806
HgaI GACGC 1 cut(s) 211
HhaI GCGC 6 cut(s) 431, 561, 602, 608, 805, 1137
Hin1II CATG 4 cut(s) 56, 197, 1019, 1076
Hin6I GCGC 6 cut(s) 429, 559, 600, 606, 803, 1135
HinP1I GCGC 6 cut(s) 429, 559, 600, 606, 803, 1135
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 5 cut(s) 258, 528, 854, 1098, 1118
HpaII CCGG 5 cut(s) 111, 324, 438, 484, 806
HphI GGTGA 5 cut(s) 313, 328, 627, 776, 814
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 28, 466, 902
Hpy188III TCNNGA 1 cut(s) 773
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 205, 280, 1118
HpyAV CCTTC 6 cut(s) 82, 220, 328, 365, 837, 1097
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 971, 1048
HpyCH4V TGCA 3 cut(s) 81, 872, 986
HpyF10VI GCNNNNNNNGC 8 cut(s) 83, 100, 133, 160, 292, 372, 1036, 1132
HpyF3I CTNAG 7 cut(s) 147, 422, 452, 522, 657, 846, 918
HpySE526I ACGT 2 cut(s) 971, 1048
Hsp92II CATG 4 cut(s) 56, 197, 1019, 1076
HspAI GCGC 6 cut(s) 429, 559, 600, 606, 803, 1135
KroI GCCGGC 1 cut(s) 805
KroNI GCCGGC 1 cut(s) 807
Ksp22I TGATCA 1 cut(s) 769
KspI CCGCGG 1 cut(s) 238
Kzo9I GATC 4 cut(s) 48, 490, 769, 1069
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 4 cut(s) 91, 451, 546, 762
Lsp1109I GCAGC 1 cut(s) 438
LweI GCATC 2 cut(s) 818, 1044
MaeI CTAG 7 cut(s) 578, 678, 926, 977, 992, 1083, 1141
MaeII ACGT 2 cut(s) 971, 1048
MaeIII GTNAC 1 cut(s) 820
MalI GATC 4 cut(s) 50, 492, 771, 1071
MboI GATC 4 cut(s) 48, 490, 769, 1069
MboII GAAGA 3 cut(s) 165, 168, 180
MflI RGATCY 2 cut(s) 48, 490
MhlI GDGCHC 3 cut(s) 543, 663, 699
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 673, 743, 1003
MluI ACGCGT 1 cut(s) 203
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 2 cut(s) 537, 848
Mox20I TGGCCA 1 cut(s) 312
MroNI GCCGGC 1 cut(s) 805
MscI TGGCCA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 7 cut(s) 218, 237, 308, 375, 421, 451, 521
MspI CCGG 5 cut(s) 111, 324, 438, 484, 806
MspR9I CCNGG 1 cut(s) 760
MvaI CCWGG 1 cut(s) 760
MvnI CGCG 3 cut(s) 205, 237, 1137
MwoI GCNNNNNNNGC 8 cut(s) 83, 100, 133, 160, 292, 372, 1036, 1132
NaeI GCCGGC 1 cut(s) 807
NdeI CATATG 1 cut(s) 1041
NdeII GATC 4 cut(s) 48, 490, 769, 1069
NgoMIV GCCGGC 1 cut(s) 805
NlaIII CATG 4 cut(s) 56, 197, 1019, 1076
NlaIV GGNNCC 2 cut(s) 135, 447
NmeAIII GCCGAG 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 820
NspV TTCGAA 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 807
PfeI GAWTC 3 cut(s) 258, 1098, 1118
PkrI GCNGC 4 cut(s) 153, 239, 377, 428
PleI GAGTC 2 cut(s) 536, 848
PmaCI CACGTG 1 cut(s) 972
PmlI CACGTG 1 cut(s) 972
PpsI GAGTC 2 cut(s) 536, 848
Ppu21I YACGTR 2 cut(s) 972, 1049
PsiI TTATAA 1 cut(s) 960
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 758
PspCI CACGTG 1 cut(s) 972
PspFI CCCAGC 1 cut(s) 555
PspGI CCWGG 1 cut(s) 758
PspN4I GGNNCC 2 cut(s) 135, 447
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 2 cut(s) 48, 490
PvuII CAGCTG 1 cut(s) 521
SacI GAGCTC 1 cut(s) 543
SacII CCGCGG 1 cut(s) 238
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 178
SatI GCNGC 4 cut(s) 152, 238, 376, 427
Sau3AI GATC 4 cut(s) 48, 490, 769, 1069
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 2 cut(s) 537, 848
ScrFI CCNGG 1 cut(s) 760
SduI GDGCHC 3 cut(s) 543, 663, 699
SfaNI GCATC 2 cut(s) 818, 1044
SfcI CTRYAG 1 cut(s) 891
Sfr303I CCGCGG 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
SpeI ACTAGT 1 cut(s) 991
Sse9I AATT 3 cut(s) 673, 743, 1003
SspMI CTAG 7 cut(s) 578, 678, 926, 977, 992, 1083, 1141
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 758
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 2 cut(s) 974, 1051
TaqI TCGA 5 cut(s) 5, 200, 256, 1101, 1113
TasI AATT 3 cut(s) 673, 743, 1003
TauI GCSGC 3 cut(s) 154, 240, 378
TfiI GAWTC 3 cut(s) 258, 1098, 1118
TscAI CASTG 3 cut(s) 88, 661, 1003
TseFI GTSAC 1 cut(s) 820
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 2 cut(s) 83, 1032
TspGWI ACGGA 5 cut(s) 48, 483, 500, 533, 866
TspRI CASTG 3 cut(s) 88, 661, 1003
XapI RAATTY 2 cut(s) 673, 743
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 7 cut(s) 578, 678, 926, 977, 992, 1083, 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.