AT3G57810

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000651
Physical Location & Seq
Forward (+)
21415760 .. 21417961
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57810.2

Sequence Viewer

Length: 654 bp
ATGATGATTTGTTACTCTCCAATTACAACATGTTCTAGGAATGCTATCAGTATCAAGAGGCATTTAGGCTCTCGCCTCTACGGCGTTGTGGCTCACGGATCATCTAAATTCTCCTGCTACAGTCTTTTATCAGGACTTTCAAGAAGACATTATACCGGTTTTCGTGTATCGGTCTCTAATAGACCTTCTAGTTGGCACGATAAAGGACTTTTTGGGTCAGTATTGATCAATCGACCAACTGTTGCTCCTAAGGAAAAGCTTGAAGTTTCTTTCTTGTCCCCTGAGGCTAATATGAAATGCTCGAAGATAGAATCTAACATGAGAAATCTCTATTGTTATTCAAGATTTGCATATACAGGTGTGATTGTTAGCTTGCTTGTTTGTTATTCTTCGACTTCCCAATCAGCGTACGCAGATTCTTCAAGGGATAAAGATGCTAACAACGTGCATCATCATTCGTCTGATGGTAAATTCCACAATGGGAAAAGAGTTTATACTGATTACTCTATCATTGGTATTCCGGGGGATGGCAGATGTTTGTTTCGTTCTGTAGCTCACGGATTCTGCTTACGCTCTGGGAAACTAGCTCCAGGCGAGAAGATGCAGAGAGAACTCGCTGACGAATTACGTACCAGGGTAAGTATCTATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

217

Amino Acids

24.18

Weight (kDa)

9.65

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 174 - 300 2.2e-32 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 2 cut(s) 107, 470
AfaI GTAC 2 cut(s) 410, 631
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 29
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 4 cut(s) 141, 263, 342, 423
AjnI CCWGG 2 cut(s) 589, 632
AluBI AGCT 4 cut(s) 259, 372, 554, 587
AluI AGCT 4 cut(s) 259, 372, 554, 587
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 107, 470
AsiGI ACCGGT 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 522
AxyI CCTNAGG 2 cut(s) 249, 282
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
BbsI GAAGAC 1 cut(s) 151
BccI CCATC 2 cut(s) 458, 521
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 591, 634
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 3 cut(s) 36, 189, 584
BfmI CTRYAG 2 cut(s) 118, 549
BglI GCCNNNNNGGC 1 cut(s) 81
Bme1390I CCNGG 3 cut(s) 522, 591, 634
BmrFI CCNGG 3 cut(s) 522, 591, 634
BmsI GCATC 3 cut(s) 424, 457, 591
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 2 cut(s) 521, 633
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse118I RCCGGY 1 cut(s) 155
Bse21I CCTNAGG 2 cut(s) 249, 282
BseBI CCWGG 2 cut(s) 591, 634
BseDI CCNNGG 2 cut(s) 521, 633
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 273
BshTI ACCGGT 1 cut(s) 155
BsiSI CCGG 2 cut(s) 156, 521
BsiWI CGTACG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 98, 225
BspCNI CTCAG 1 cut(s) 274
BspPI GGATC 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 521, 633
BssMI GATC 2 cut(s) 98, 225
Bst2UI CCWGG 2 cut(s) 591, 634
Bst4CI ACNGT 2 cut(s) 122, 241
BstBAI YACGTR 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 374
BstDEI CTNAG 2 cut(s) 249, 282
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 2 cut(s) 101, 228
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 98, 225
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 2 cut(s) 591, 634
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 3 cut(s) 520, 589, 632
BstSFI CTRYAG 2 cut(s) 118, 549
BstSNI TACGTA 1 cut(s) 629
BstV2I GAAGAC 1 cut(s) 151
Bsu36I CCTNAGG 2 cut(s) 249, 282
BtsCI GGATG 1 cut(s) 532
Cac8I GCNNGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 155
Csp6I GTAC 2 cut(s) 409, 630
CspAI ACCGGT 1 cut(s) 155
CviAII CATG 2 cut(s) 30, 319
CviJI RGCY 7 cut(s) 69, 92, 259, 287, 372, 554, 587
CviKI_1 RGCY 7 cut(s) 69, 92, 259, 287, 372, 554, 587
CviQI GTAC 2 cut(s) 409, 630
DdeI CTNAG 2 cut(s) 249, 282
DpnI GATC 2 cut(s) 100, 227
DpnII GATC 2 cut(s) 98, 225
Eco105I TACGTA 1 cut(s) 629
Eco31I GGTCTC 1 cut(s) 178
Eco81I CCTNAGG 2 cut(s) 249, 282
EcoRII CCWGG 2 cut(s) 589, 632
FaeI CATG 2 cut(s) 33, 322
FaiI YATR 8 cut(s) 31, 153, 293, 320, 352, 354, 495, 648
FaqI GGGAC 1 cut(s) 262
FatI CATG 2 cut(s) 29, 318
FbaI TGATCA 1 cut(s) 225
FokI GGATG 1 cut(s) 539
FspBI CTAG 3 cut(s) 36, 189, 584
GsuI CTGGAG 1 cut(s) 573
HapII CCGG 2 cut(s) 156, 521
Hin1II CATG 2 cut(s) 33, 322
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 3 cut(s) 311, 416, 561
HpaII CCGG 2 cut(s) 156, 521
Hpy188I TCNGA 1 cut(s) 463
Hpy188III TCNNGA 4 cut(s) 55, 132, 141, 342
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 2 cut(s) 122, 241
HpyCH4IV ACGT 2 cut(s) 444, 628
HpyCH4V TGCA 3 cut(s) 350, 448, 604
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 249, 282
HpySE526I ACGT 2 cut(s) 444, 628
Hsp92II CATG 2 cut(s) 33, 322
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 2 cut(s) 98, 225
LmnI GCTCC 2 cut(s) 250, 592
LweI GCATC 3 cut(s) 424, 457, 591
MaeI CTAG 3 cut(s) 36, 189, 584
MaeII ACGT 2 cut(s) 444, 628
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 100, 227
MboI GATC 2 cut(s) 98, 225
MboII GAAGA 5 cut(s) 156, 316, 381, 411, 610
MluCI AATT 4 cut(s) 21, 107, 470, 623
MnlI CCTC 3 cut(s) 51, 86, 277
MseI TTAA 1 cut(s) 652
MspI CCGG 2 cut(s) 156, 521
MspR9I CCNGG 3 cut(s) 522, 591, 634
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 2 cut(s) 591, 634
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 522
NdeII GATC 2 cut(s) 98, 225
NlaIII CATG 2 cut(s) 33, 322
NspI RCATGY 1 cut(s) 33
PciI ACATGT 1 cut(s) 29
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 3 cut(s) 311, 416, 561
Pfl23II CGTACG 1 cut(s) 408
PinAI ACCGGT 1 cut(s) 155
Ppu21I YACGTR 1 cut(s) 629
PscI ACATGT 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 589, 632
PspGI CCWGG 2 cut(s) 589, 632
PspLI CGTACG 1 cut(s) 408
RsaI GTAC 2 cut(s) 410, 631
RsaNI GTAC 2 cut(s) 409, 630
SaqAI TTAA 1 cut(s) 652
Sau3AI GATC 2 cut(s) 98, 225
ScrFI CCNGG 3 cut(s) 522, 591, 634
SetI ASST 8 cut(s) 187, 261, 361, 374, 447, 556, 589, 631
SfaNI GCATC 3 cut(s) 424, 457, 591
SfcI CTRYAG 2 cut(s) 118, 549
SnaBI TACGTA 1 cut(s) 629
Sse9I AATT 4 cut(s) 21, 107, 470, 623
SspMI CTAG 3 cut(s) 36, 189, 584
StyD4I CCNGG 3 cut(s) 520, 589, 632
TaaI ACNGT 2 cut(s) 122, 241
TaiI ACGT 2 cut(s) 447, 631
TaqI TCGA 3 cut(s) 232, 302, 392
TaqII GACCGA 1 cut(s) 160
TasI AATT 4 cut(s) 21, 107, 470, 623
TfiI GAWTC 3 cut(s) 311, 416, 561
Tru1I TTAA 1 cut(s) 652
Tru9I TTAA 1 cut(s) 652
TspDTI ATGAA 1 cut(s) 308
TspGWI ACGGA 2 cut(s) 111, 573
XapI RAATTY 2 cut(s) 107, 470
XceI RCATGY 1 cut(s) 33
XspI CTAG 3 cut(s) 36, 189, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.