FvH4_6g22905

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000651
Physical Location & Seq
Reverse (-)
16664282 .. 16666120
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22905.t1

Sequence Viewer

Length: 546 bp
ATGATGATAAGGAAGATGACGGTGATTTGTCATATTCACATGGAAAAAAAGTTCATACTGAATATTCCATTATTGCTCACTTCTCCATTCTGCACAAGTATACCTGGAGATGGAAGGTGCTTGTTCCGCTCTGTTGCTCATGGCGCTTGTTTAAGAGCTGGAAAATCAGCTCCTAGTCAAAGCCTTCAGAGAGAATTAGCAGATGACTTGAGAGCTAGTGTTGCTGATGAGTTTATCAAAAGGAGAGAAGAGACAGAATGGTTTGTTGAAGGTGATTTTGACCCCTATGTCTTCCAAATAAGAAAGCCACATGTATGGGGAGGGGAGCCCGAATTGTTAATGGCTTCACATTATGAATCCCACGATGACACTGCAGAATGCCTCACAGTATACATGCATGATGAAAAGGCTGGCCGCTTAATAACTATTGCCGAGTACGGGCAAGAATATGGGAAGGAAAATCCAATCAGAGTTCTCTATCATGGTTTCGGCCATTATGATGCATTGCATATTCCAGGAGTGAGGGGTGGTAAACCCAGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

182

Amino Acids

20.63

Weight (kDa)

6.36

Isoelectric Point (pI)

62.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 35 - 166 4e-20 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 129
AccI GTMKAC 2 cut(s) 100, 390
AciI CCGC 2 cut(s) 127, 415
AcoI YGGCCR 2 cut(s) 412, 490
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 110, 438
AflIII ACRYGT 1 cut(s) 310
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 3 cut(s) 103, 514, 536
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 3 cut(s) 158, 170, 215
AluI AGCT 3 cut(s) 158, 170, 215
Alw26I GTCTC 1 cut(s) 245
AoxI GGCC 2 cut(s) 412, 490
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 34, 284
BanII GRGCYC 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 283
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 3 cut(s) 105, 516, 538
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 2 cut(s) 174, 216
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 1 cut(s) 415
BlsI GCNGC 1 cut(s) 416
Bme1390I CCNGG 3 cut(s) 105, 516, 538
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 3 cut(s) 105, 516, 538
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 536
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 438
Bse3DI GCAATG 1 cut(s) 503
BseBI CCWGG 3 cut(s) 105, 516, 538
BseDI CCNNGG 1 cut(s) 536
BseLI CCNNNNNNNGG 2 cut(s) 110, 438
BseMI GCAATG 1 cut(s) 503
BsgI GTGCAG 1 cut(s) 76
BshFI GGCC 2 cut(s) 414, 492
BslI CCNNNNNNNGG 2 cut(s) 110, 438
BsmAI GTCTC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 2 cut(s) 414, 492
Bsp1286I GDGCHC 1 cut(s) 330
BspACI CCGC 2 cut(s) 127, 415
BspANI GGCC 2 cut(s) 414, 492
BspLI GGNNCC 1 cut(s) 327
BspMAI CTGCAG 1 cut(s) 376
BsrBI CCGCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 503
BssECI CCNNGG 1 cut(s) 536
BssNAI GTATAC 2 cut(s) 101, 391
Bst1107I GTATAC 2 cut(s) 101, 391
Bst2UI CCWGG 3 cut(s) 105, 516, 538
Bst4CI ACNGT 2 cut(s) 22, 388
Bst6I CTCTTC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 412
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstMAI GTCTC 1 cut(s) 245
BstMWI GCNNNNNNNGC 3 cut(s) 126, 143, 221
BstNI CCWGG 3 cut(s) 105, 516, 538
BstNSI RCATGY 2 cut(s) 314, 397
BstSCI CCNGG 3 cut(s) 103, 514, 536
BstSFI CTRYAG 1 cut(s) 372
BstV2I GAAGAC 1 cut(s) 283
BstXI CCANNNNNNTGG 1 cut(s) 315
BstZ17I GTATAC 2 cut(s) 101, 391
BsuRI GGCC 2 cut(s) 414, 492
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 436
CviAII CATG 6 cut(s) 40, 140, 311, 394, 398, 482
CviQI GTAC 1 cut(s) 436
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 412, 490
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 103, 514, 536
EcoT22I ATGCAT 2 cut(s) 399, 505
EcoT38I GRGCYC 1 cut(s) 330
FaeI CATG 6 cut(s) 43, 143, 314, 397, 401, 485
FatI CATG 6 cut(s) 39, 139, 310, 393, 397, 481
FblI GTMKAC 2 cut(s) 100, 390
Fnu4HI GCNGC 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 415
FspBI CTAG 2 cut(s) 174, 216
GlaI GCGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 415
GsuI CTGGAG 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 414, 492
HhaI GCGC 1 cut(s) 146
Hin1II CATG 6 cut(s) 43, 143, 314, 397, 401, 485
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 1 cut(s) 356
HphI GGTGA 2 cut(s) 34, 284
Hpy166II GTNNAC 3 cut(s) 101, 391, 533
Hpy188I TCNGA 2 cut(s) 189, 470
Hpy8I GTNNAC 3 cut(s) 101, 391, 533
HpyAV CCTTC 4 cut(s) 108, 194, 263, 448
HpyCH4III ACNGT 2 cut(s) 22, 388
HpyCH4V TGCA 5 cut(s) 93, 374, 397, 503, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 143, 221
Hsp92II CATG 6 cut(s) 43, 143, 314, 397, 401, 485
HspAI GCGC 1 cut(s) 144
LmnI GCTCC 2 cut(s) 175, 325
LpnPI CCDG 7 cut(s) 90, 117, 144, 396, 501, 523, 528
LweI GCATC 1 cut(s) 490
MaeI CTAG 2 cut(s) 174, 216
MbiI CCGCTC 1 cut(s) 129
MboII GAAGA 3 cut(s) 25, 260, 283
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 2 cut(s) 194, 332
MnlI CCTC 3 cut(s) 314, 392, 516
Mph1103I ATGCAT 2 cut(s) 399, 505
MseI TTAA 4 cut(s) 152, 338, 419, 544
MslI CAYNNNNRTG 2 cut(s) 313, 498
MspR9I CCNGG 3 cut(s) 105, 516, 538
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 3 cut(s) 105, 516, 538
MwoI GCNNNNNNNGC 3 cut(s) 126, 143, 221
NlaIII CATG 6 cut(s) 43, 143, 314, 397, 401, 485
NlaIV GGNNCC 1 cut(s) 327
NmeAIII GCCGAG 1 cut(s) 457
NsiI ATGCAT 2 cut(s) 399, 505
NspI RCATGY 2 cut(s) 314, 397
PciI ACATGT 1 cut(s) 310
PctI GAATGC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 1 cut(s) 416
PscI ACATGT 1 cut(s) 310
Psp6I CCWGG 3 cut(s) 103, 514, 536
PspGI CCWGG 3 cut(s) 103, 514, 536
PspN4I GGNNCC 1 cut(s) 327
PstI CTGCAG 1 cut(s) 376
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 2 cut(s) 313, 498
SaqAI TTAA 4 cut(s) 152, 338, 419, 544
SatI GCNGC 1 cut(s) 415
ScrFI CCNGG 3 cut(s) 105, 516, 538
SduI GDGCHC 1 cut(s) 330
SetI ASST 6 cut(s) 106, 119, 160, 172, 217, 274
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 1 cut(s) 372
SmiMI CAYNNNNRTG 2 cut(s) 313, 498
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 2 cut(s) 194, 332
SsiI CCGC 2 cut(s) 127, 415
SspI AATATT 1 cut(s) 64
SspMI CTAG 2 cut(s) 174, 216
StyD4I CCNGG 3 cut(s) 103, 514, 536
TaaI ACNGT 2 cut(s) 22, 388
TasI AATT 2 cut(s) 194, 332
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 4 cut(s) 152, 338, 419, 544
Tru9I TTAA 4 cut(s) 152, 338, 419, 544
TscAI CASTG 1 cut(s) 376
TspDTI ATGAA 3 cut(s) 43, 369, 417
TspRI CASTG 1 cut(s) 376
XceI RCATGY 2 cut(s) 314, 397
XmiI GTMKAC 2 cut(s) 100, 390
XspI CTAG 2 cut(s) 174, 216
Zsp2I ATGCAT 2 cut(s) 399, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.