Prupe.7G070500_v2.0.a1

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000651
Physical Location & Seq
Forward (+)
10845819 .. 10850783
4965 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G070500.2

Sequence Viewer

Length: 1035 bp
ATGAAGGTAAATCTTGATTATCAAGGTTTTGTTAACACGATTGTTTGTCCTCCCATCAACCATTCTCCAAAGAATGTGGTCTGCCTGAGTGGCTGTACCCAAATACAGATGGGGAGTAAGATCTGTAGTGTGGTGTCACGAGGAGCATCCAGTTCATGTTGTAAAGGTCTGCAGACAGGGAAAACAGGGACAAAAATTTTCAGTTTGCCTCTCTCCAAGAATCGTCCAACCAATATTGGCCAAACATCCCATGGAAACTGTTTCAGGTTTTTCTTCTCCAAGGATTCACGGTCATTAACTGTTAATGCTGGAGGACCTAATAAAGGAAGTCTTGAAATATCATTGGCATGTCGGGGTATGAATACCAGGCTTTTGGTTCCAAGACAAGGAATGCTTCCCAAAATCAAGTGTAATGTGGGCCCAGTATCTTGGCCACAGGGATGTGCCTCTGCTGGTTTAATATTTGGATTGTTGGTCTGTAATTGTTCAGGACCAGCACATGCTGAAGCAGCTCACAGGGAGGATGAGGAAGATGACAATGATTTATCATATGTGAAATTCTCACGTGGGAAAAAAGTTTACACTGACTACTCTATTATTGGAATACCTGGAGATGGGAGGTGCTTATTCCGCTCTGTTGCTCATGGGGCTTATTTACGAGCTGGGAAAGCAGCTCCTGCAGAGAGCCTTCAGAGAGAATTAGCAGATGACTTGAGAGCTCGGGTTGCAGATGAGTTTATCAAAAGGAGGGAAGAGACAGAATGGTTTGTTGAAGGTGATTTTGACACGTATGTTTCCCAAATAAGAAGGCCACATGTATGGGGAGGTGAGCCTGAATTGTTCATGGCTTCACATGTTCTCAAGATGCCAATCACAGTGTACATGTATGATGAAAAGGCTGGTGGGTTGATAACCATTGCTGAGTATGGGCAAGAATATGGAAAGGAAAATCCCATCAAAGTTCTCTACCACGGGTTTGGCCATTACGATGCCTTGCGTATTCCCGGAAAGAATGGTGGTAGATCTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

345

Amino Acids

37.72

Weight (kDa)

8.96

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 633
AciI CCGC 1 cut(s) 631
AcoI YGGCCR 3 cut(s) 238, 431, 979
AcsI RAATTY 2 cut(s) 195, 557
AcuI CTGAAG 2 cut(s) 525, 674
AcvI CACGTG 1 cut(s) 566
AfaI GTAC 2 cut(s) 97, 881
AfiI CCNNNNNNNGG 3 cut(s) 323, 386, 614
AflIII ACRYGT 4 cut(s) 786, 814, 853, 882
AgsI TTSAA 2 cut(s) 335, 773
AjnI CCWGG 2 cut(s) 365, 607
AluBI AGCT 4 cut(s) 512, 662, 674, 719
AluI AGCT 4 cut(s) 512, 662, 674, 719
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 1 cut(s) 749
AlwNI CAGNNNCTG 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 720
AoxI GGCC 5 cut(s) 238, 418, 431, 809, 979
ApaI GGGCCC 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 509, 671
ApoI RAATTY 2 cut(s) 195, 557
AspS9I GGNCC 4 cut(s) 314, 418, 419, 491
AsuC2I CCSGG 1 cut(s) 1005
AsuHPI GGTGA 2 cut(s) 788, 839
AvaI CYCGRG 1 cut(s) 720
AvaII GGWCC 2 cut(s) 314, 491
BaeGI GKGCMC 1 cut(s) 422
BalI TGGCCA 3 cut(s) 240, 433, 981
BanII GRGCYC 2 cut(s) 422, 721
BauI CACGAG 1 cut(s) 138
BbrPI CACGTG 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 721
BbvI GCAGC 2 cut(s) 521, 683
BccI CCATC 4 cut(s) 62, 103, 608, 962
BciT130I CCWGG 2 cut(s) 367, 609
BcnI CCSGG 1 cut(s) 1005
BcoDI GTCTC 1 cut(s) 749
BfaI CTAG 1 cut(s) 1026
BfmI CTRYAG 3 cut(s) 124, 170, 678
BglI GCCNNNNNGGC 1 cut(s) 90
BglII AGATCT 2 cut(s) 120, 1022
BisI GCNGC 2 cut(s) 510, 672
BlsI GCNGC 2 cut(s) 511, 673
Bme1390I CCNGG 3 cut(s) 367, 609, 1005
Bme18I GGWCC 2 cut(s) 314, 491
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 4 cut(s) 314, 418, 419, 491
BmiI GGNNCC 2 cut(s) 378, 420
BmrFI CCNGG 3 cut(s) 367, 609, 1005
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 3 cut(s) 155, 855, 979
BmuI ACTGGG 1 cut(s) 416
BpmI CTGGAG 2 cut(s) 330, 630
BpuEI CTTGAG 2 cut(s) 733, 845
BpuMI CCSGG 1 cut(s) 1005
BsaAI YACGTR 2 cut(s) 566, 789
BsaBI GATNNNNATC 1 cut(s) 869
BsaJI CCNNGG 3 cut(s) 250, 279, 970
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 386, 614
Bse1I ACTGG 2 cut(s) 150, 422
Bse3DI GCAATG 1 cut(s) 915
Bse8I GATNNNNATC 1 cut(s) 869
BseBI CCWGG 2 cut(s) 367, 609
BseDI CCNNGG 3 cut(s) 250, 279, 970
BseGI GGATG 4 cut(s) 146, 245, 446, 529
BseJI GATNNNNATC 1 cut(s) 869
BseLI CCNNNNNNNGG 3 cut(s) 323, 386, 614
BseMI GCAATG 1 cut(s) 915
BseMII CTCAG 2 cut(s) 77, 912
BseNI ACTGG 2 cut(s) 150, 422
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 2 cut(s) 521, 683
BseYI CCCAGC 1 cut(s) 662
BshFI GGCC 5 cut(s) 240, 420, 433, 811, 981
BsiHKAI GWGCWC 1 cut(s) 721
BsiHKCI CYCGRG 1 cut(s) 720
BsiSI CCGG 1 cut(s) 1005
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 3 cut(s) 323, 386, 614
BsmAI GTCTC 1 cut(s) 749
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 5 cut(s) 240, 420, 433, 811, 981
BsoBI CYCGRG 1 cut(s) 720
Bsp120I GGGCCC 1 cut(s) 418
Bsp1286I GDGCHC 2 cut(s) 422, 721
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 2 cut(s) 120, 1022
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 1 cut(s) 631
BspANI GGCC 5 cut(s) 240, 420, 433, 811, 981
BspCNI CTCAG 2 cut(s) 78, 913
BspLI GGNNCC 2 cut(s) 378, 420
BspMAI CTGCAG 2 cut(s) 174, 682
BsrBI CCGCTC 1 cut(s) 633
BsrDI GCAATG 1 cut(s) 915
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 2 cut(s) 150, 422
BssECI CCNNGG 3 cut(s) 250, 279, 970
BssMI GATC 2 cut(s) 120, 1022
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 250, 279
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 367, 609
Bst4CI ACNGT 4 cut(s) 260, 291, 301, 877
Bst6I CTCTTC 1 cut(s) 747
BstAPI GCANNNNNTGC 1 cut(s) 677
BstAUI TGTACA 1 cut(s) 879
BstBAI YACGTR 2 cut(s) 566, 789
BstDEI CTNAG 2 cut(s) 86, 921
BstDSI CCRYGG 2 cut(s) 250, 970
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 4 cut(s) 146, 245, 446, 529
BstKTI GATC 2 cut(s) 123, 1025
BstMAI GTCTC 1 cut(s) 749
BstMBI GATC 2 cut(s) 120, 1022
BstMWI GCNNNNNNNGC 7 cut(s) 90, 509, 630, 647, 668, 677, 725
BstNI CCWGG 2 cut(s) 367, 609
BstNSI RCATGY 5 cut(s) 351, 503, 818, 857, 886
BstSCI CCNGG 3 cut(s) 365, 607, 1003
BstSFI CTRYAG 3 cut(s) 124, 170, 678
BstSLI GKGCMC 1 cut(s) 422
BstV1I GCAGC 2 cut(s) 521, 683
BstX2I RGATCY 2 cut(s) 120, 1022
BstXI CCANNNNNNTGG 4 cut(s) 373, 429, 819, 977
BstYI RGATCY 2 cut(s) 120, 1022
BsuRI GGCC 5 cut(s) 240, 420, 433, 811, 981
BtgI CCRYGG 2 cut(s) 250, 970
BtsCI GGATG 4 cut(s) 146, 245, 446, 529
BtsIMutI CAGTG 2 cut(s) 582, 882
CaiI CAGNNNCTG 1 cut(s) 677
Cfr13I GGNCC 4 cut(s) 314, 418, 419, 491
Csp6I GTAC 2 cut(s) 96, 880
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 9 cut(s) 156, 251, 348, 500, 644, 815, 844, 854, 883
CviQI GTAC 2 cut(s) 96, 880
DdeI CTNAG 2 cut(s) 86, 921
DpnI GATC 2 cut(s) 122, 1024
DpnII GATC 2 cut(s) 120, 1022
EaeI YGGCCR 3 cut(s) 238, 431, 979
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
Ecl136II GAGCTC 1 cut(s) 719
Eco130I CCWWGG 2 cut(s) 250, 279
Eco24I GRGCYC 2 cut(s) 422, 721
Eco47I GGWCC 2 cut(s) 314, 491
Eco53kI GAGCTC 1 cut(s) 719
Eco57I CTGAAG 2 cut(s) 525, 674
Eco72I CACGTG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 719
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 365, 607
EcoT14I CCWWGG 2 cut(s) 250, 279
EcoT38I GRGCYC 2 cut(s) 422, 721
ErhI CCWWGG 2 cut(s) 250, 279
FaeI CATG 9 cut(s) 159, 254, 351, 503, 647, 818, 847, 857, 886
FalI AAGNNNNNCTT 4 cut(s) 315, 347, 378, 410
FaqI GGGAC 1 cut(s) 202
FatI CATG 9 cut(s) 155, 250, 347, 499, 643, 814, 843, 853, 882
FauNDI CATATG 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 510, 672
FokI GGATG 4 cut(s) 133, 232, 453, 536
FriOI GRGCYC 2 cut(s) 422, 721
Fsp4HI GCNGC 2 cut(s) 510, 672
FspBI CTAG 1 cut(s) 1026
GluI GCNGC 2 cut(s) 510, 672
GsaI CCCAGC 1 cut(s) 666
GsuI CTGGAG 2 cut(s) 330, 630
HaeIII GGCC 5 cut(s) 240, 420, 433, 811, 981
HapII CCGG 1 cut(s) 1005
Hin1II CATG 9 cut(s) 159, 254, 351, 503, 647, 818, 847, 857, 886
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 2 cut(s) 220, 284
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 1 cut(s) 1005
HphI GGTGA 2 cut(s) 788, 839
Hpy166II GTNNAC 3 cut(s) 34, 580, 880
Hpy188I TCNGA 1 cut(s) 693
Hpy188III TCNNGA 5 cut(s) 14, 138, 332, 489, 862
Hpy8I GTNNAC 3 cut(s) 34, 580, 880
HpyAV CCTTC 3 cut(s) 698, 767, 801
HpyCH4III ACNGT 4 cut(s) 260, 291, 301, 877
HpyCH4IV ACGT 2 cut(s) 565, 788
HpyCH4V TGCA 3 cut(s) 172, 680, 728
HpyF10VI GCNNNNNNNGC 7 cut(s) 90, 509, 630, 647, 668, 677, 725
HpyF3I CTNAG 2 cut(s) 86, 921
HpySE526I ACGT 2 cut(s) 565, 788
Hsp92II CATG 9 cut(s) 159, 254, 351, 503, 647, 818, 847, 857, 886
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 2 cut(s) 120, 1022
LmnI GCTCC 2 cut(s) 143, 679
Lsp1109I GCAGC 2 cut(s) 521, 683
LweI GCATC 3 cut(s) 155, 855, 979
MaeI CTAG 1 cut(s) 1026
MaeII ACGT 2 cut(s) 565, 788
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 122, 1024
MbiI CCGCTC 1 cut(s) 633
MboI GATC 2 cut(s) 120, 1022
MboII GAAGA 3 cut(s) 265, 542, 764
MflI RGATCY 2 cut(s) 120, 1022
MhlI GDGCHC 2 cut(s) 422, 721
MlsI TGGCCA 3 cut(s) 240, 433, 981
MluCI AATT 5 cut(s) 195, 481, 557, 698, 836
MluNI TGGCCA 3 cut(s) 240, 433, 981
MmeI TCCRAC 1 cut(s) 251
Mox20I TGGCCA 3 cut(s) 240, 433, 981
MscI TGGCCA 3 cut(s) 240, 433, 981
MseI TTAA 4 cut(s) 33, 296, 303, 458
MslI CAYNNNNRTG 4 cut(s) 346, 439, 817, 987
Msp20I TGGCCA 3 cut(s) 240, 433, 981
MspI CCGG 1 cut(s) 1005
MspR9I CCNGG 3 cut(s) 367, 609, 1005
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 2 cut(s) 367, 609
MwoI GCNNNNNNNGC 7 cut(s) 90, 509, 630, 647, 668, 677, 725
NciI CCSGG 1 cut(s) 1005
NcoI CCATGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 550
NdeII GATC 2 cut(s) 120, 1022
NlaIII CATG 9 cut(s) 159, 254, 351, 503, 647, 818, 847, 857, 886
NlaIV GGNNCC 2 cut(s) 378, 420
NmuCI GTSAC 1 cut(s) 135
NspI RCATGY 5 cut(s) 351, 503, 818, 857, 886
PciI ACATGT 3 cut(s) 814, 853, 882
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 220, 284
PfoI TCCNGGA 1 cut(s) 1003
PkrI GCNGC 2 cut(s) 511, 673
PmaCI CACGTG 1 cut(s) 566
PmlI CACGTG 1 cut(s) 566
Ppu21I YACGTR 2 cut(s) 566, 789
PpuMI RGGWCCY 1 cut(s) 314
PscI ACATGT 3 cut(s) 814, 853, 882
Psp124BI GAGCTC 1 cut(s) 721
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 365, 607
PspCI CACGTG 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 2 cut(s) 365, 607
PspN4I GGNNCC 2 cut(s) 378, 420
PspOMI GGGCCC 1 cut(s) 418
PspPI GGNCC 4 cut(s) 314, 418, 419, 491
PspPPI RGGWCCY 1 cut(s) 314
PstI CTGCAG 2 cut(s) 174, 682
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 2 cut(s) 120, 1022
RsaI GTAC 2 cut(s) 97, 881
RsaNI GTAC 2 cut(s) 96, 880
RseI CAYNNNNRTG 4 cut(s) 346, 439, 817, 987
SacI GAGCTC 1 cut(s) 721
SaqAI TTAA 4 cut(s) 33, 296, 303, 458
SatI GCNGC 2 cut(s) 510, 672
Sau3AI GATC 2 cut(s) 120, 1022
Sau96I GGNCC 4 cut(s) 314, 418, 419, 491
ScrFI CCNGG 3 cut(s) 367, 609, 1005
SduI GDGCHC 2 cut(s) 422, 721
SfaNI GCATC 3 cut(s) 155, 855, 979
SfcI CTRYAG 3 cut(s) 124, 170, 678
SinI GGWCC 2 cut(s) 314, 491
SmiMI CAYNNNNRTG 4 cut(s) 346, 439, 817, 987
SmlI CTYRAG 2 cut(s) 712, 860
SmoI CTYRAG 2 cut(s) 712, 860
Sse9I AATT 5 cut(s) 195, 481, 557, 698, 836
SsiI CCGC 1 cut(s) 631
SspI AATATT 2 cut(s) 235, 462
SspMI CTAG 1 cut(s) 1026
SstI GAGCTC 1 cut(s) 721
StyD4I CCNGG 3 cut(s) 365, 607, 1003
StyI CCWWGG 2 cut(s) 250, 279
TaaI ACNGT 4 cut(s) 260, 291, 301, 877
TaiI ACGT 2 cut(s) 568, 791
TasI AATT 5 cut(s) 195, 481, 557, 698, 836
TatI WGTACW 1 cut(s) 879
TfiI GAWTC 2 cut(s) 220, 284
Tru1I TTAA 4 cut(s) 33, 296, 303, 458
Tru9I TTAA 4 cut(s) 33, 296, 303, 458
TscAI CASTG 2 cut(s) 589, 882
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 2 cut(s) 509, 671
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 5 cut(s) 17, 144, 374, 832, 906
TspRI CASTG 2 cut(s) 589, 882
VpaK11BI GGWCC 2 cut(s) 314, 491
XagI CCTNNNNNAGG 1 cut(s) 321
XapI RAATTY 2 cut(s) 195, 557
XceI RCATGY 5 cut(s) 351, 503, 818, 857, 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XspI CTAG 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.