Rw4G026280

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000651
Physical Location & Seq
Forward (+)
52438433 .. 52440726
2294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G026280.1

Sequence Viewer

Length: 480 bp
ATGGATAATCACCAAGGCATACGCGGAGATGGAAGGTGTTTGTTTCGTTCTGTGGTTCATGGAGCTTGTCTAAGAGCAGGGAAGCCATCTCCAAGTGACAGCCATCAGAAAGAACTTGCAGATGAGCTTAGAGAGAAGGTAGCAGATGAATTCATTAAGAGGAGGGCTGACACTGAATGGTTTCTTGAAGATGATTTTGAGAGATACGTTGTACAGATGCGGCAACCCCACATTTGGGGAGGCGAGCCTGAGTTGCTTATGTCCTCGCATGTCCTGCAGATACCGATTACAGTTTATATGCGGGACAAGAATTCTAGGAGTCTCAGAATCATAGCTGAATATGGCAAAGAGTATGGTAAGGATAACCCTATCCGTGTACTTTATCATGGCTATGGACACTACGATGCATTGCGTGGTCCAAGTGCAACTACTGGTGCAGCGTCCAAGCCGTTGAAACAAAGAACAGAGATGCAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

159

Amino Acids

18.32

Weight (kDa)

7.82

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 8 - 134 1.2e-28 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 3 cut(s) 24, 220, 301
AcsI RAATTY 2 cut(s) 149, 310
AfaI GTAC 2 cut(s) 213, 378
AfiI CCNNNNNNNGG 2 cut(s) 234, 235
AgsI TTSAA 2 cut(s) 188, 454
AluBI AGCT 3 cut(s) 65, 127, 335
AluI AGCT 3 cut(s) 65, 127, 335
Alw26I GTCTC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 149, 310
Asp700I GAANNNNTTC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 416
AvaII GGWCC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 449
BccI CCATC 3 cut(s) 23, 94, 111
BceAI ACGGC 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 221, 438
BlsI GCNGC 2 cut(s) 222, 439
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmsI GCATC 3 cut(s) 207, 394, 459
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 235
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 2 cut(s) 234, 235
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 2 cut(s) 240, 337
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 234, 235
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 317
Bsp1407I TGTACA 1 cut(s) 211
BspACI CCGC 3 cut(s) 24, 220, 301
BspCNI CTCAG 2 cut(s) 241, 336
BspFNI CGCG 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 274
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 4 cut(s) 71, 128, 249, 323
BstFNI CGCG 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 326
BstMWI GCNNNNNNNGC 2 cut(s) 253, 274
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 275
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 1 cut(s) 429
Csp6I GTAC 2 cut(s) 212, 377
CviAII CATG 3 cut(s) 59, 269, 386
CviJI RGCY 9 cut(s) 65, 85, 102, 127, 167, 247, 335, 390, 448
CviKI_1 RGCY 9 cut(s) 65, 85, 102, 127, 167, 247, 335, 390, 448
CviQI GTAC 2 cut(s) 212, 377
DdeI CTNAG 4 cut(s) 71, 128, 249, 323
Eco130I CCWWGG 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 416
EcoRI GAATTC 2 cut(s) 149, 310
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 3 cut(s) 62, 272, 389
FaqI GGGAC 1 cut(s) 317
FatI CATG 3 cut(s) 58, 268, 385
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 221, 438
Fsp4HI GCNGC 2 cut(s) 221, 438
FspBI CTAG 1 cut(s) 315
GluI GCNGC 2 cut(s) 221, 438
HgaI GACGC 1 cut(s) 429
Hin1II CATG 3 cut(s) 62, 272, 389
HinfI GANTC 2 cut(s) 319, 327
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 108, 326
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 27, 130
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 6 cut(s) 119, 277, 407, 425, 437, 472
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 274
HpyF3I CTNAG 4 cut(s) 71, 128, 249, 323
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 62, 272, 389
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 4 cut(s) 63, 261, 287, 417
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 3 cut(s) 207, 394, 459
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 1 cut(s) 200
MluCI AATT 2 cut(s) 149, 310
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 4 cut(s) 153, 156, 233, 274
Mph1103I ATGCAT 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 2 cut(s) 390, 402
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 253, 274
NlaIII CATG 3 cut(s) 62, 272, 389
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 2 cut(s) 222, 439
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 416
PstI CTGCAG 1 cut(s) 279
RsaI GTAC 2 cut(s) 213, 378
RsaNI GTAC 2 cut(s) 212, 377
RseI CAYNNNNRTG 2 cut(s) 390, 402
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 221, 438
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 328
SetI ASST 6 cut(s) 38, 67, 129, 141, 210, 337
SfaNI GCATC 3 cut(s) 207, 394, 459
SfcI CTRYAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 390, 402
Sse9I AATT 2 cut(s) 149, 310
SsiI CCGC 3 cut(s) 24, 220, 301
SspMI CTAG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 210
TasI AATT 2 cut(s) 149, 310
TatI WGTACW 2 cut(s) 211, 376
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 47, 142, 162
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 2 cut(s) 149, 310
XceI RCATGY 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.