Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000651

Physical Location & Seq

Genomic Coordinates Reverse (-)

8231336 .. 8232559

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1115500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGATCAAGGCATACGTGGAGACGGAAGATGTTTGTTCCGGTCTGTGGTTCACGGCGCTTCTCTAAGGGCAGGGAAACCATCTCCAAGTGACAGCCTTCAGAGAGAACTTGCCGACGAGCTCAGATCAAAGGTGGTCGATGAATTCATCAGACGGAGGTCAGACACCGAATGGTTTCTTGAAGATGATTTTGAAACGTACGTTGTACAGATGCGACAGCCCCACATTTGGGGAGGAGAACCTGAGTTGCTTATGTCCTCACATGTCCTACGGATGCCGATTACAGTTTATATGCGGGACAAGGATTCCGGCGACCTCATGATCATAGCCGAATATGGTCAAGAGTACGGAAGGGACAACCCTATCCGCGTACTTTATCATGGTTATGGACACTACGACGCACTGCCTGCTGCAACTACTGGTACACAGTCCAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

147

Amino Acids

16.71

Weight (kDa)

5.5

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTU	PF02338	6 - 132	1.5e-27	OTU-like cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57810 AT3G57810 AT3G57810 AT3G57810
fragaria_vesca	FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_6g22905
malus_domestica	MD14G1063700.v1.1 MD16G1115500.v1.1
prunus_persica	Prupe.1G231600_v2.0.a1 Prupe.1G231600_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1
pyrus_communis	pycom14g05150 pycom16g09800
rosa_chinensis	RchiOBHm_Chr2g0153721 RchiOBHm_Chr2g0156231 RchiOBHm_Chr3g0465711 RchiOBHm_Chr3g0480701 RchiOBHm_Chr4g0430871
rosa_laevigata	RLG00000006944 RLG00000023460
rosa_multiflora	Rmu_sc0001135.1_g000009 Rmu_sc0002620.1_g000002 Rmu_sc0003902.1_g000027 Rmu_sc0006263.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372540 Rroxscaffold_6G00401150
rosa_rugosa	Rorug03G0184800 Rorug03G0184900 Rorug04G0246100 Rorug04G0246200 Rorug04G0246300 Rorug04G0246400 Rorug04G0246500 Rorug04G0246600
rosa_samantha	Rh3AG237100 Rh3BG270200 Rh3CG266400 Rh3DG262500 Rh4AG302400 Rh4AG303300 Rh4BG310500 Rh4CG326900 Rh4DG306600
rosa_wichuraiana	Rw3G021230 Rw4G026280 Rw5G016580 Rw6G016010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	369
AciI	CCGC	2 cut(s)	295, 367
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	5 cut(s)	200, 207, 347, 372, 424
AfiI	CCNNNNNNNGG	3 cut(s)	46, 228, 229
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	182, 194
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	70
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmsI	GCATC	2 cut(s)	201, 264
BoxI	GACNNNNGTC	1 cut(s)	157
BsaAI	YACGTR	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 228, 229
Bse1I	ACTGG	1 cut(s)	424
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	46, 228, 229
BseMII	CTCAG	2 cut(s)	136, 234
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	40, 309
BsiWI	CGTACG	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	311, 368
BslI	CCNNNNNNNGG	3 cut(s)	46, 228, 229
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	2 cut(s)	311, 368
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	4, 125, 321
BspACI	CCGC	2 cut(s)	295, 367
BspCNI	CTCAG	2 cut(s)	135, 235
BspFNI	CGCG	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	318
BspPI	GGATC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	424
BssMI	GATC	3 cut(s)	4, 125, 321
Bst4CI	ACNGT	2 cut(s)	286, 429
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstAUI	TGTACA	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	3 cut(s)	65, 122, 243
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	7, 128, 324
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	3 cut(s)	4, 125, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	266
BstPAI	GACNNNNGTC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	408
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	1 cut(s)	59
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	5 cut(s)	199, 206, 346, 371, 423
CviAII	CATG	3 cut(s)	263, 319, 380
CviJI	RGCY	4 cut(s)	96, 121, 220, 329
CviKI_1	RGCY	4 cut(s)	96, 121, 220, 329
CviQI	GTAC	5 cut(s)	199, 206, 346, 371, 423
DdeI	CTNAG	3 cut(s)	65, 122, 243
DpnI	GATC	3 cut(s)	6, 127, 323
DpnII	GATC	3 cut(s)	4, 125, 321
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	3 cut(s)	266, 322, 383
FaqI	GGGAC	2 cut(s)	311, 368
FatI	CATG	3 cut(s)	262, 318, 379
FauI	CCCGC	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	411
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	60
HapII	CCGG	2 cut(s)	40, 309
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	266, 322, 383
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	2 cut(s)	40, 309
Hpy166II	GTNNAC	2 cut(s)	52, 425
Hpy188I	TCNGA	4 cut(s)	102, 125, 152, 163
Hpy188III	TCNNGA	3 cut(s)	179, 319, 341
Hpy8I	GTNNAC	2 cut(s)	52, 425
Hpy99I	CGWCG	2 cut(s)	119, 401
HpyAV	CCTTC	2 cut(s)	107, 345
HpyCH4III	ACNGT	2 cut(s)	286, 429
HpyCH4IV	ACGT	3 cut(s)	16, 197, 201
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	3 cut(s)	65, 122, 243
HpySE526I	ACGT	3 cut(s)	16, 197, 201
Hsp92II	CATG	3 cut(s)	266, 322, 383
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	4, 125, 321
LpnPI	CCDG	6 cut(s)	53, 57, 255, 322, 405, 420
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	201, 264
MaeII	ACGT	3 cut(s)	16, 197, 201
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	6, 127, 323
MboI	GATC	3 cut(s)	4, 125, 321
MboII	GAAGA	2 cut(s)	39, 194
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	143
MnlI	CCTC	4 cut(s)	150, 227, 268, 326
MroXI	GAANNNNTTC	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	2 cut(s)	40, 309
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	3 cut(s)	4, 125, 321
NlaIII	CATG	3 cut(s)	266, 322, 383
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	266
PagI	TCATGA	1 cut(s)	318
PciI	ACATGT	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	305
Pfl23II	CGTACG	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	17
PscI	ACATGT	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	123
PspLI	CGTACG	1 cut(s)	198
RsaI	GTAC	5 cut(s)	200, 207, 347, 372, 424
RsaNI	GTAC	5 cut(s)	199, 206, 346, 371, 423
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	123
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	3 cut(s)	4, 125, 321
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	8 cut(s)	19, 123, 135, 161, 200, 204, 244, 318
SfaNI	GCATC	2 cut(s)	201, 264
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	2 cut(s)	295, 367
SstI	GAGCTC	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	286, 429
TaiI	ACGT	3 cut(s)	19, 200, 204
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	136, 156
TspGWI	ACGGA	4 cut(s)	39, 169, 286, 363
TspRI	CASTG	1 cut(s)	408
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.