Rh3AG237100

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000651
Physical Location & Seq
Reverse (-)
24576249 .. 24578867
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG237100.1

Sequence Viewer

Length: 1038 bp
ATGAAGGTAAATCTTGATTATCAAGGCTATGTGAATACGATTGTTTGTACTCACATCGACCAGGGTGCAAAGGATGTTGTCTGCATGAGTGGCAGTATTGAAATTCAGATGGGCAGTAAGATCTGCAGTGTAGTGTCTCGAGGAGCATCCAGTTCATGTTGTTACCGACTGCAGCCAGGGAAATCGGGAAATAAATTTGGTGGCTTATCCCTCACCAAGAGTCGTCCATCTGAAATTGGTCAAACACCCCATGGAAGCTGTTTCAGGTCTTGCTTCTCCACGGATATGGGCAACTCACGGTCATTAACAGTTAATGCTAGAAAACCTCAGAAACGATGTCTAGAAATTTCATTGGCATGTCAGGGTATGAAAACGAGATTTTTGGTCCCAAGACAAGGAATGCTTCCCAAAATCAAGTGTAATGTGGGCCCAGTGTTGTGGCCACAAGGATGTGCGTCTGCTGGTTTGATTTTTGGGTTGCTGATTTGTAATTCTTCTGAGCCAACACATGCTGAAGCAGCTTGTAAGACTGATGATAAGGAATATGACGGTGATTTGTCATATTCACATGGAAAAAAAGTTTATACTGATTATTCTATTATTGGAATACCTGGAGATGGAAGGTGCATGTTCCGCTCTGTTGCTCATGGCGCTTGTTTACGAGCTGGAAAATCAGCTCCTAGTCCAAGCCTTCAGAGAGAATTAGCAGATGACTTGAGAGCTAGAGTTGCAGATGAGTTTATCAAAAGGAGAGAAGAGACAGAATGGTTTGTTGAAGGTGATTTTGACACATATGTCTCCCAAATAAGAAAGCCACATGTATGGGGAGGCGAGCCCGAATTGTTAATGGCTTCACATGTTCTTGAAATGCCGATCACAGTATACATGTATGATGAAAAGGCTGGCGGCTTGATAACCATTGCTGAGTATGGGCAAGAGTATGGGAAGGAAAATCCAATCAGAGTTCTCTATTATGGTTTTGGCCATTATGATGCATTGCATATTCCGGGAAAGGGTGGTGGTAAATCTAGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

345

Amino Acids

37.82

Weight (kDa)

8.53

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 204 - 330 1.4e-28 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 794
AccBSI CCGCTC 1 cut(s) 636
AccI GTMKAC 1 cut(s) 882
AciI CCGC 2 cut(s) 634, 906
AcoI YGGCCR 2 cut(s) 440, 982
AcsI RAATTY 3 cut(s) 102, 194, 345
AcuI CTGAAG 2 cut(s) 534, 677
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 3 cut(s) 395, 617, 1013
AflIII ACRYGT 3 cut(s) 817, 856, 885
AgsI TTSAA 3 cut(s) 101, 776, 866
AjnI CCWGG 3 cut(s) 60, 175, 610
AluBI AGCT 5 cut(s) 258, 521, 665, 677, 722
AluI AGCT 5 cut(s) 258, 521, 665, 677, 722
Alw26I GTCTC 3 cut(s) 141, 752, 802
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 3 cut(s) 427, 440, 982
ApaI GGGCCC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 172, 518
ApoI RAATTY 3 cut(s) 102, 194, 345
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 3 cut(s) 385, 427, 428
AsuC2I CCSGG 1 cut(s) 1008
AsuHPI GGTGA 3 cut(s) 205, 563, 791
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 431
BalI TGGCCA 2 cut(s) 442, 984
BanII GRGCYC 2 cut(s) 431, 837
BbvI GCAGC 2 cut(s) 184, 530
BccI CCATC 3 cut(s) 103, 235, 611
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 3 cut(s) 62, 177, 612
BcnI CCSGG 1 cut(s) 1008
BcoDI GTCTC 3 cut(s) 141, 752, 802
BfaI CTAG 5 cut(s) 318, 341, 681, 723, 1029
BfmI CTRYAG 2 cut(s) 124, 170
BfoI RGCGCY 1 cut(s) 654
BglII AGATCT 1 cut(s) 120
BisI GCNGC 3 cut(s) 173, 519, 907
BlsI GCNGC 3 cut(s) 174, 520, 908
Bme1390I CCNGG 4 cut(s) 62, 177, 612, 1008
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 3 cut(s) 385, 427, 428
BmiI GGNNCC 2 cut(s) 387, 429
BmrFI CCNGG 4 cut(s) 62, 177, 612, 1008
BmrI ACTGGG 1 cut(s) 425
BmsI GCATC 2 cut(s) 155, 982
BmuI ACTGGG 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 736
BpuMI CCSGG 1 cut(s) 1008
BsaJI CCNNGG 4 cut(s) 61, 176, 250, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 395, 617, 1013
Bse1I ACTGG 2 cut(s) 150, 431
Bse3DI GCAATG 2 cut(s) 918, 995
BseBI CCWGG 3 cut(s) 62, 177, 612
BseDI CCNNGG 4 cut(s) 61, 176, 250, 279
BseGI GGATG 3 cut(s) 79, 146, 455
BseLI CCNNNNNNNGG 3 cut(s) 395, 617, 1013
BseMI GCAATG 2 cut(s) 918, 995
BseMII CTCAG 3 cut(s) 341, 489, 915
BseNI ACTGG 2 cut(s) 150, 431
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 2 cut(s) 184, 530
BshFI GGCC 3 cut(s) 429, 442, 984
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 1007
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 395, 617, 1013
BsmAI GTCTC 3 cut(s) 141, 752, 802
BsmFI GGGAC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 3 cut(s) 429, 442, 984
BsoBI CYCGRG 1 cut(s) 138
Bsp120I GGGCCC 1 cut(s) 427
Bsp1286I GDGCHC 2 cut(s) 431, 837
Bsp143I GATC 2 cut(s) 120, 873
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 2 cut(s) 634, 906
BspANI GGCC 3 cut(s) 429, 442, 984
BspCNI CTCAG 3 cut(s) 340, 490, 916
BspLI GGNNCC 2 cut(s) 387, 429
BspMAI CTGCAG 2 cut(s) 128, 174
BsrBI CCGCTC 1 cut(s) 636
BsrDI GCAATG 2 cut(s) 918, 995
BsrI ACTGG 2 cut(s) 150, 431
BssECI CCNNGG 4 cut(s) 61, 176, 250, 279
BssMI GATC 2 cut(s) 120, 873
BssNAI GTATAC 1 cut(s) 883
BssT1I CCWWGG 1 cut(s) 250
Bst1107I GTATAC 1 cut(s) 883
Bst2UI CCWGG 3 cut(s) 62, 177, 612
Bst4CI ACNGT 4 cut(s) 300, 310, 551, 880
Bst6I CTCTTC 1 cut(s) 750
BstC8I GCNNGC 2 cut(s) 833, 904
BstDEI CTNAG 3 cut(s) 327, 498, 924
BstDSI CCRYGG 2 cut(s) 250, 279
BstF5I GGATG 3 cut(s) 79, 146, 455
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 2 cut(s) 123, 876
BstMAI GTCTC 3 cut(s) 141, 752, 802
BstMBI GATC 2 cut(s) 120, 873
BstMWI GCNNNNNNNGC 5 cut(s) 90, 518, 633, 650, 728
BstNI CCWGG 3 cut(s) 62, 177, 612
BstNSI RCATGY 6 cut(s) 360, 512, 631, 821, 860, 889
BstSCI CCNGG 4 cut(s) 60, 175, 610, 1006
BstSFI CTRYAG 2 cut(s) 124, 170
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 184, 530
BstX2I RGATCY 1 cut(s) 120
BstXI CCANNNNNNTGG 3 cut(s) 286, 438, 822
BstYI RGATCY 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 883
BsuRI GGCC 3 cut(s) 429, 442, 984
BtgI CCRYGG 2 cut(s) 250, 279
BtsCI GGATG 3 cut(s) 79, 146, 455
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 133, 438
Cac8I GCNNGC 2 cut(s) 833, 904
CfoI GCGC 1 cut(s) 653
Cfr13I GGNCC 3 cut(s) 385, 427, 428
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 48
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 3 cut(s) 327, 498, 924
DpnI GATC 2 cut(s) 122, 875
DpnII GATC 2 cut(s) 120, 873
DrdI GACNNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 794
EaeI YGGCCR 2 cut(s) 440, 982
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 2 cut(s) 431, 837
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 534, 677
Eco88I CYCGRG 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 60, 175, 610
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 997
EcoT38I GRGCYC 2 cut(s) 431, 837
ErhI CCWWGG 1 cut(s) 250
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 1 cut(s) 371
FauNDI CATATG 1 cut(s) 793
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 3 cut(s) 173, 519, 907
FokI GGATG 3 cut(s) 86, 133, 462
FriOI GRGCYC 2 cut(s) 431, 837
Fsp4HI GCNGC 3 cut(s) 173, 519, 907
FspBI CTAG 5 cut(s) 318, 341, 681, 723, 1029
GlaI GCGC 1 cut(s) 652
GluI GCNGC 3 cut(s) 173, 519, 907
GsuI CTGGAG 1 cut(s) 633
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 3 cut(s) 429, 442, 984
HapII CCGG 1 cut(s) 1007
HgaI GACGC 1 cut(s) 444
HhaI GCGC 1 cut(s) 653
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HinfI GANTC 1 cut(s) 220
HpaII CCGG 1 cut(s) 1007
HphI GGTGA 3 cut(s) 205, 563, 791
Hpy166II GTNNAC 2 cut(s) 659, 883
Hpy188I TCNGA 6 cut(s) 108, 232, 330, 499, 696, 962
Hpy188III TCNNGA 5 cut(s) 14, 138, 186, 341, 863
Hpy8I GTNNAC 2 cut(s) 659, 883
HpyAV CCTTC 4 cut(s) 615, 701, 770, 940
HpyCH4III ACNGT 4 cut(s) 300, 310, 551, 880
HpyCH4V TGCA 8 cut(s) 68, 84, 126, 172, 627, 731, 995, 1000
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 518, 633, 650, 728
HpyF3I CTNAG 3 cut(s) 327, 498, 924
HspAI GCGC 1 cut(s) 651
Kzo9I GATC 2 cut(s) 120, 873
LmnI GCTCC 2 cut(s) 143, 682
Lsp1109I GCAGC 2 cut(s) 184, 530
LweI GCATC 2 cut(s) 155, 982
MaeI CTAG 5 cut(s) 318, 341, 681, 723, 1029
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 122, 875
MbiI CCGCTC 1 cut(s) 636
MboI GATC 2 cut(s) 120, 873
MboII GAAGA 2 cut(s) 486, 767
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 2 cut(s) 431, 837
MlsI TGGCCA 2 cut(s) 442, 984
MluCI AATT 7 cut(s) 102, 194, 234, 345, 490, 701, 839
MluNI TGGCCA 2 cut(s) 442, 984
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 4 cut(s) 134, 221, 336, 821
Mox20I TGGCCA 2 cut(s) 442, 984
Mph1103I ATGCAT 1 cut(s) 997
MscI TGGCCA 2 cut(s) 442, 984
MseI TTAA 4 cut(s) 305, 312, 845, 1036
MslI CAYNNNNRTG 5 cut(s) 284, 355, 448, 820, 990
Msp20I TGGCCA 2 cut(s) 442, 984
MspI CCGG 1 cut(s) 1007
MspR9I CCNGG 4 cut(s) 62, 177, 612, 1008
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 3 cut(s) 62, 177, 612
MwoI GCNNNNNNNGC 5 cut(s) 90, 518, 633, 650, 728
NciI CCSGG 1 cut(s) 1008
NcoI CCATGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 793
NdeII GATC 2 cut(s) 120, 873
NlaIV GGNNCC 2 cut(s) 387, 429
NsiI ATGCAT 1 cut(s) 997
NspI RCATGY 6 cut(s) 360, 512, 631, 821, 860, 889
PaeR7I CTCGAG 1 cut(s) 138
PciI ACATGT 3 cut(s) 817, 856, 885
PctI GAATGC 1 cut(s) 405
PfoI TCCNGGA 1 cut(s) 1006
PkrI GCNGC 3 cut(s) 174, 520, 908
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 3 cut(s) 817, 856, 885
Psp6I CCWGG 3 cut(s) 60, 175, 610
PspGI CCWGG 3 cut(s) 60, 175, 610
PspN4I GGNNCC 2 cut(s) 387, 429
PspOMI GGGCCC 1 cut(s) 427
PspPI GGNCC 3 cut(s) 385, 427, 428
PstI CTGCAG 2 cut(s) 128, 174
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 5 cut(s) 284, 355, 448, 820, 990
SaqAI TTAA 4 cut(s) 305, 312, 845, 1036
SatI GCNGC 3 cut(s) 173, 519, 907
Sau3AI GATC 2 cut(s) 120, 873
Sau96I GGNCC 3 cut(s) 385, 427, 428
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 4 cut(s) 62, 177, 612, 1008
SduI GDGCHC 2 cut(s) 431, 837
SfaNI GCATC 2 cut(s) 155, 982
SfcI CTRYAG 2 cut(s) 124, 170
Sfr274I CTCGAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 385
SlaI CTCGAG 1 cut(s) 138
SmiMI CAYNNNNRTG 5 cut(s) 284, 355, 448, 820, 990
SmlI CTYRAG 2 cut(s) 138, 715
SmoI CTYRAG 2 cut(s) 138, 715
Sse9I AATT 7 cut(s) 102, 194, 234, 345, 490, 701, 839
SsiI CCGC 2 cut(s) 634, 906
SspMI CTAG 5 cut(s) 318, 341, 681, 723, 1029
StyD4I CCNGG 4 cut(s) 60, 175, 610, 1006
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 4 cut(s) 300, 310, 551, 880
TaqI TCGA 2 cut(s) 57, 139
TasI AATT 7 cut(s) 102, 194, 234, 345, 490, 701, 839
TatI WGTACW 1 cut(s) 47
TauI GCSGC 1 cut(s) 909
Tru1I TTAA 4 cut(s) 305, 312, 845, 1036
Tru9I TTAA 4 cut(s) 305, 312, 845, 1036
TscAI CASTG 2 cut(s) 133, 438
TseI GCWGC 2 cut(s) 172, 518
TspDTI ATGAA 5 cut(s) 17, 144, 339, 383, 909
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 2 cut(s) 133, 438
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 3 cut(s) 102, 194, 345
XbaI TCTAGA 1 cut(s) 340
XceI RCATGY 6 cut(s) 360, 512, 631, 821, 860, 889
XhoI CTCGAG 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 5 cut(s) 318, 341, 681, 723, 1029
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.