OTU domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 81 - 125 | 3.4e-06 | PPR repeat family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 365 |
| AciI | CCGC | 1 cut(s) | 296 |
| AcsI | RAATTY | 1 cut(s) | 382 |
| AfeI | AGCGCT | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 99 |
| AgsI | TTSAA | 4 cut(s) | 106, 166, 215, 388 |
| AluBI | AGCT | 1 cut(s) | 20 |
| AluI | AGCT | 1 cut(s) | 20 |
| Alw26I | GTCTC | 1 cut(s) | 123 |
| Aor51HI | AGCGCT | 1 cut(s) | 66 |
| AoxI | GGCC | 3 cut(s) | 13, 168, 393 |
| ApeKI | GCWGC | 1 cut(s) | 20 |
| ApoI | RAATTY | 1 cut(s) | 382 |
| AspLEI | GCGC | 2 cut(s) | 67, 367 |
| AspS9I | GGNCC | 3 cut(s) | 14, 169, 394 |
| BbvI | GCAGC | 1 cut(s) | 7 |
| BcoDI | GTCTC | 1 cut(s) | 123 |
| BfmI | CTRYAG | 2 cut(s) | 304, 407 |
| BfoI | RGCGCY | 1 cut(s) | 68 |
| BisI | GCNGC | 2 cut(s) | 21, 297 |
| BlsI | GCNGC | 2 cut(s) | 22, 298 |
| BmgT120I | GGNCC | 3 cut(s) | 14, 169, 394 |
| BmrI | ACTGGG | 1 cut(s) | 91 |
| BmsI | GCATC | 1 cut(s) | 303 |
| BmuI | ACTGGG | 1 cut(s) | 91 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 99 |
| Bse1I | ACTGG | 1 cut(s) | 86 |
| Bse3DI | GCAATG | 1 cut(s) | 322 |
| BseGI | GGATG | 1 cut(s) | 340 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 99 |
| BseMI | GCAATG | 1 cut(s) | 322 |
| BseNI | ACTGG | 1 cut(s) | 86 |
| BseXI | GCAGC | 1 cut(s) | 7 |
| BseYI | CCCAGC | 1 cut(s) | 16 |
| Bsh1236I | CGCG | 1 cut(s) | 365 |
| BshFI | GGCC | 3 cut(s) | 15, 170, 395 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 99 |
| BsmAI | GTCTC | 1 cut(s) | 123 |
| BsnI | GGCC | 3 cut(s) | 15, 170, 395 |
| BspACI | CCGC | 1 cut(s) | 296 |
| BspANI | GGCC | 3 cut(s) | 15, 170, 395 |
| BspFNI | CGCG | 1 cut(s) | 365 |
| BsrDI | GCAATG | 1 cut(s) | 322 |
| BsrI | ACTGG | 1 cut(s) | 86 |
| Bst4CI | ACNGT | 2 cut(s) | 237, 408 |
| Bst6I | CTCTTC | 1 cut(s) | 264 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 38 |
| BstF5I | GGATG | 1 cut(s) | 340 |
| BstFNI | CGCG | 1 cut(s) | 365 |
| BstH2I | RGCGCY | 1 cut(s) | 68 |
| BstHHI | GCGC | 2 cut(s) | 67, 367 |
| BstMAI | GTCTC | 1 cut(s) | 123 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 296 |
| BstNSI | RCATGY | 1 cut(s) | 196 |
| BstSFI | CTRYAG | 2 cut(s) | 304, 407 |
| BstUI | CGCG | 1 cut(s) | 365 |
| BstV1I | GCAGC | 1 cut(s) | 7 |
| BsuRI | GGCC | 3 cut(s) | 15, 170, 395 |
| BtsCI | GGATG | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 67, 367 |
| Cfr13I | GGNCC | 3 cut(s) | 14, 169, 394 |
| CviAII | CATG | 2 cut(s) | 133, 193 |
| CviJI | RGCY | 8 cut(s) | 15, 20, 137, 149, 170, 219, 299, 395 |
| CviKI_1 | RGCY | 8 cut(s) | 15, 20, 137, 149, 170, 219, 299, 395 |
| Eam1104I | CTCTTC | 1 cut(s) | 264 |
| EarI | CTCTTC | 1 cut(s) | 264 |
| Eco47III | AGCGCT | 1 cut(s) | 66 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 38 |
| EcoO109I | RGGNCCY | 1 cut(s) | 169 |
| EcoT22I | ATGCAT | 1 cut(s) | 263 |
| FaeI | CATG | 2 cut(s) | 136, 196 |
| FaiI | YATR | 5 cut(s) | 134, 194, 263, 306, 342 |
| FatI | CATG | 2 cut(s) | 132, 192 |
| Fnu4HI | GCNGC | 2 cut(s) | 21, 297 |
| FokI | GGATG | 1 cut(s) | 347 |
| Fsp4HI | GCNGC | 2 cut(s) | 21, 297 |
| GlaI | GCGC | 2 cut(s) | 66, 366 |
| GluI | GCNGC | 2 cut(s) | 21, 297 |
| GsaI | CCCAGC | 1 cut(s) | 20 |
| HaeII | RGCGCY | 1 cut(s) | 68 |
| HaeIII | GGCC | 3 cut(s) | 15, 170, 395 |
| HhaI | GCGC | 2 cut(s) | 67, 367 |
| Hin1II | CATG | 2 cut(s) | 136, 196 |
| Hin6I | GCGC | 2 cut(s) | 65, 365 |
| HinP1I | GCGC | 2 cut(s) | 65, 365 |
| HinfI | GANTC | 1 cut(s) | 157 |
| Hpy166II | GTNNAC | 1 cut(s) | 58 |
| Hpy188I | TCNGA | 2 cut(s) | 186, 334 |
| Hpy188III | TCNNGA | 1 cut(s) | 388 |
| Hpy8I | GTNNAC | 1 cut(s) | 58 |
| HpyAV | CCTTC | 2 cut(s) | 160, 385 |
| HpyCH4III | ACNGT | 2 cut(s) | 237, 408 |
| HpyCH4V | TGCA | 4 cut(s) | 261, 316, 327, 372 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 296 |
| Hsp92II | CATG | 2 cut(s) | 136, 196 |
| HspAI | GCGC | 2 cut(s) | 65, 365 |
| LpnPI | CCDG | 5 cut(s) | 30, 35, 67, 160, 259 |
| Lsp1109I | GCAGC | 1 cut(s) | 7 |
| LweI | GCATC | 1 cut(s) | 303 |
| MboII | GAAGA | 1 cut(s) | 281 |
| MluCI | AATT | 1 cut(s) | 382 |
| MnlI | CCTC | 4 cut(s) | 44, 182, 231, 265 |
| Mph1103I | ATGCAT | 1 cut(s) | 263 |
| MseI | TTAA | 1 cut(s) | 282 |
| MspA1I | CMGCKG | 1 cut(s) | 20 |
| MvnI | CGCG | 1 cut(s) | 365 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 296 |
| NlaIII | CATG | 2 cut(s) | 136, 196 |
| NsiI | ATGCAT | 1 cut(s) | 263 |
| NspI | RCATGY | 1 cut(s) | 196 |
| PfeI | GAWTC | 1 cut(s) | 157 |
| PkrI | GCNGC | 2 cut(s) | 22, 298 |
| PspFI | CCCAGC | 1 cut(s) | 16 |
| PspPI | GGNCC | 3 cut(s) | 14, 169, 394 |
| PvuII | CAGCTG | 1 cut(s) | 20 |
| SaqAI | TTAA | 1 cut(s) | 282 |
| SatI | GCNGC | 2 cut(s) | 21, 297 |
| Sau96I | GGNCC | 3 cut(s) | 14, 169, 394 |
| SetI | ASST | 3 cut(s) | 22, 45, 248 |
| SfaNI | GCATC | 1 cut(s) | 303 |
| SfcI | CTRYAG | 2 cut(s) | 304, 407 |
| Sse9I | AATT | 1 cut(s) | 382 |
| SsiI | CCGC | 1 cut(s) | 296 |
| TaaI | ACNGT | 2 cut(s) | 237, 408 |
| TaqI | TCGA | 2 cut(s) | 69, 87 |
| TasI | AATT | 1 cut(s) | 382 |
| TauI | GCSGC | 1 cut(s) | 299 |
| TfiI | GAWTC | 1 cut(s) | 157 |
| Tru1I | TTAA | 1 cut(s) | 282 |
| Tru9I | TTAA | 1 cut(s) | 282 |
| TseI | GCWGC | 1 cut(s) | 20 |
| TspDTI | ATGAA | 3 cut(s) | 269, 300, 311 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 38 |
| XapI | RAATTY | 1 cut(s) | 382 |
| XceI | RCATGY | 1 cut(s) | 196 |
| Zsp2I | ATGCAT | 1 cut(s) | 263 |