OTU domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 1063 - 1225 | 3.5e-13 | Type III restriction enzyme, res subunit |
| SNF2-rel_dom | PF00176 | 1067 - 1326 | 6.9e-87 | SNF2-related domain |
| Helicase_C | PF00271 | 1357 - 1470 | 5.1e-21 | Helicase conserved C-terminal domain |
| SnAC | PF14619 | 1565 - 1661 | 6.8e-17 | Snf2-ATP coupling, chromatin remodelling complex |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4055 |
| AarI | CACCTGC | 2 cut(s) | 5899, 6008 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 599, 9655 |
| Acc36I | ACCTGC | 3 cut(s) | 5899, 6008, 7796 |
| Acc65I | GGTACC | 1 cut(s) | 4194 |
| AccB1I | GGYRCC | 4 cut(s) | 4194, 4837, 5878, 11344 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 446, 1127, 7021, 8722 |
| AccI | GTMKAC | 2 cut(s) | 3045, 7158 |
| AccII | CGCG | 4 cut(s) | 2583, 8070, 9560, 10035 |
| AccIII | TCCGGA | 2 cut(s) | 2529, 7400 |
| AcoI | YGGCCR | 5 cut(s) | 393, 4408, 7005, 8706, 9476 |
| AcvI | CACGTG | 1 cut(s) | 5966 |
| AcyI | GRCGYC | 2 cut(s) | 5390, 10793 |
| AfeI | AGCGCT | 2 cut(s) | 2759, 10173 |
| AflII | CTTAAG | 2 cut(s) | 2384, 3214 |
| AflIII | ACRYGT | 5 cut(s) | 2248, 6679, 6911, 8414, 9530 |
| AgeI | ACCGGT | 2 cut(s) | 5290, 5803 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 544, 3872 |
| AjiI | CACGTC | 4 cut(s) | 1874, 6914, 9531, 11305 |
| AleI | CACNNNNGTG | 1 cut(s) | 1227 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 4735, 4767, 5083, 5115 |
| Alw44I | GTGCAC | 1 cut(s) | 1677 |
| Ama87I | CYCGRG | 2 cut(s) | 541, 1764 |
| Aor13HI | TCCGGA | 2 cut(s) | 2529, 7400 |
| Aor51HI | AGCGCT | 2 cut(s) | 2759, 10173 |
| ApaI | GGGCCC | 3 cut(s) | 3409, 3441, 6095 |
| ApaLI | GTGCAC | 1 cut(s) | 1677 |
| AseI | ATTAAT | 3 cut(s) | 276, 2868, 3417 |
| AsiGI | ACCGGT | 2 cut(s) | 5290, 5803 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 1531, 2549, 2768, 2789, 4808, 6487, 10134 |
| Asp718I | GGTACC | 1 cut(s) | 4194 |
| AspA2I | CCTAGG | 1 cut(s) | 3277 |
| AspLEI | GCGC | 7 cut(s) | 2760, 3706, 5248, 5908, 10035, 10174, 11290 |
| AsuC2I | CCSGG | 4 cut(s) | 590, 3436, 5530, 6327 |
| AsuII | TTCGAA | 1 cut(s) | 7085 |
| AvaI | CYCGRG | 2 cut(s) | 541, 1764 |
| AvaII | GGWCC | 8 cut(s) | 418, 449, 3341, 4447, 5288, 6560, 7808, 9563 |
| AvrII | CCTAGG | 1 cut(s) | 3277 |
| AxyI | CCTNAGG | 3 cut(s) | 4199, 9387, 9711 |
| BaeGI | GKGCMC | 8 cut(s) | 1053, 1681, 3409, 3441, 6095, 9243, 11256, 11347 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 642, 675 |
| BalI | TGGCCA | 3 cut(s) | 4410, 8708, 9478 |
| BamHI | GGATCC | 4 cut(s) | 2835, 2966, 6574, 6821 |
| BanI | GGYRCC | 4 cut(s) | 4194, 4837, 5878, 11344 |
| BauI | CACGAG | 2 cut(s) | 5384, 6882 |
| BbrPI | CACGTG | 1 cut(s) | 5966 |
| BbsI | GAAGAC | 6 cut(s) | 342, 1657, 5606, 8151, 9240, 11307 |
| BceAI | ACGGC | 4 cut(s) | 2508, 3151, 5172, 5844 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 10746, 10780, 10845, 10879 |
| BciVI | GTATCC | 6 cut(s) | 2194, 2822, 5263, 6863, 6991, 8692 |
| BclI | TGATCA | 6 cut(s) | 514, 2200, 3802, 3837, 7270, 9019 |
| BcnI | CCSGG | 4 cut(s) | 590, 3436, 5530, 6327 |
| BfoI | RGCGCY | 4 cut(s) | 2761, 3707, 5249, 10175 |
| BfrI | CTTAAG | 2 cut(s) | 2384, 3214 |
| BfuAI | ACCTGC | 3 cut(s) | 5899, 6008, 7796 |
| BfuI | GTATCC | 6 cut(s) | 2194, 2822, 5263, 6863, 6991, 8692 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4780 |
| BglII | AGATCT | 2 cut(s) | 5399, 8779 |
| BlnI | CCTAGG | 1 cut(s) | 3277 |
| BlpI | GCTNAGC | 3 cut(s) | 957, 3796, 4482 |
| BmcAI | AGTACT | 2 cut(s) | 3861, 5458 |
| Bme18I | GGWCC | 8 cut(s) | 418, 449, 3341, 4447, 5288, 6560, 7808, 9563 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 544, 3872 |
| BmeT110I | CYCGRG | 2 cut(s) | 541, 1764 |
| BmgBI | CACGTC | 4 cut(s) | 1874, 6914, 9531, 11305 |
| BmrI | ACTGGG | 6 cut(s) | 801, 2004, 2082, 2204, 4502, 6650 |
| BmuI | ACTGGG | 6 cut(s) | 801, 2004, 2082, 2204, 4502, 6650 |
| BoxI | GACNNNNGTC | 1 cut(s) | 9561 |
| BpiI | GAAGAC | 6 cut(s) | 342, 1657, 5606, 8151, 9240, 11307 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 4931, 4963, 6229, 6261, 6826, 6858 |
| Bpu10I | CCTNAGC | 6 cut(s) | 2985, 5418, 7135, 8863, 11184, 11338 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 957, 3796, 4482 |
| Bpu14I | TTCGAA | 1 cut(s) | 7085 |
| BpuMI | CCSGG | 4 cut(s) | 590, 3436, 5530, 6327 |
| Bsa29I | ATCGAT | 2 cut(s) | 4087, 11331 |
| BsaAI | YACGTR | 2 cut(s) | 3510, 5966 |
| BsaBI | GATNNNNATC | 1 cut(s) | 6735 |
| BsaHI | GRCGYC | 2 cut(s) | 5390, 10793 |
| BsaI | GGTCTC | 3 cut(s) | 847, 6209, 10217 |
| BsaWI | WCCGGW | 8 cut(s) | 2529, 5290, 5803, 5826, 6994, 7400, 8695, 10411 |
| Bse118I | RCCGGY | 2 cut(s) | 5290, 5803 |
| Bse21I | CCTNAGG | 3 cut(s) | 4199, 9387, 9711 |
| Bse8I | GATNNNNATC | 1 cut(s) | 6735 |
| BseAI | TCCGGA | 2 cut(s) | 2529, 7400 |
| BseCI | ATCGAT | 2 cut(s) | 4087, 11331 |
| BseJI | GATNNNNATC | 1 cut(s) | 6735 |
| BseSI | GKGCMC | 8 cut(s) | 1053, 1681, 3409, 3441, 6095, 9243, 11256, 11347 |
| BseYI | CCCAGC | 3 cut(s) | 2146, 2281, 6544 |
| Bsh1236I | CGCG | 4 cut(s) | 2583, 8070, 9560, 10035 |
| BshNI | GGYRCC | 4 cut(s) | 4194, 4837, 5878, 11344 |
| BshTI | ACCGGT | 2 cut(s) | 5290, 5803 |
| BshVI | ATCGAT | 2 cut(s) | 4087, 11331 |
| BsiHKCI | CYCGRG | 2 cut(s) | 541, 1764 |
| BslFI | GGGAC | 9 cut(s) | 547, 605, 1058, 4911, 4987, 5741, 6861, 7510, 9484 |
| BsmBI | CGTCTC | 8 cut(s) | 2531, 3445, 3854, 8066, 10413, 10602, 10800, 11228 |
| BsmFI | GGGAC | 9 cut(s) | 547, 605, 1058, 4911, 4987, 5741, 6861, 7510, 9484 |
| BsmI | GAATGC | 8 cut(s) | 318, 1205, 3607, 4293, 7093, 7319, 7578, 8794 |
| Bso31I | GGTCTC | 3 cut(s) | 847, 6209, 10217 |
| BsoBI | CYCGRG | 2 cut(s) | 541, 1764 |
| Bsp119I | TTCGAA | 1 cut(s) | 7085 |
| Bsp120I | GGGCCC | 3 cut(s) | 3405, 3437, 6091 |
| Bsp13I | TCCGGA | 2 cut(s) | 2529, 7400 |
| Bsp1407I | TGTACA | 2 cut(s) | 4735, 8605 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 957, 3796, 4482 |
| Bsp19I | CCATGG | 7 cut(s) | 261, 1257, 6087, 6339, 7293, 7626, 9042 |
| Bsp68I | TCGCGA | 1 cut(s) | 8070 |
| BspDI | ATCGAT | 2 cut(s) | 4087, 11331 |
| BspEI | TCCGGA | 2 cut(s) | 2529, 7400 |
| BspFNI | CGCG | 4 cut(s) | 2583, 8070, 9560, 10035 |
| BspHI | TCATGA | 1 cut(s) | 517 |
| BspMAI | CTGCAG | 5 cut(s) | 4333, 4480, 5233, 5659, 8931 |
| BspMI | ACCTGC | 3 cut(s) | 5899, 6008, 7796 |
| BspQI | GCTCTTC | 2 cut(s) | 4950, 6267 |
| BspT104I | TTCGAA | 1 cut(s) | 7085 |
| BspT107I | GGYRCC | 4 cut(s) | 4194, 4837, 5878, 11344 |
| BspTI | CTTAAG | 2 cut(s) | 2384, 3214 |
| BspTNI | GGTCTC | 3 cut(s) | 847, 6209, 10217 |
| BsrFI | RCCGGY | 2 cut(s) | 5290, 5803 |
| BsrGI | TGTACA | 2 cut(s) | 4735, 8605 |
| BssAI | RCCGGY | 2 cut(s) | 5290, 5803 |
| BssNI | GRCGYC | 2 cut(s) | 5390, 10793 |
| BssSI | CACGAG | 2 cut(s) | 5384, 6882 |
| Bst2BI | CACGAG | 2 cut(s) | 5384, 6882 |
| Bst6I | CTCTTC | 9 cut(s) | 635, 3968, 4409, 4552, 4950, 4965, 6267, 6415, 9688 |
| BstACI | GRCGYC | 2 cut(s) | 5390, 10793 |
| BstAFI | CTTAAG | 2 cut(s) | 2384, 3214 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 5891 |
| BstAUI | TGTACA | 2 cut(s) | 4735, 8605 |
| BstBAI | YACGTR | 2 cut(s) | 3510, 5966 |
| BstBI | TTCGAA | 1 cut(s) | 7085 |
| BstDSI | CCRYGG | 8 cut(s) | 261, 1257, 5188, 6087, 6339, 7293, 7626, 9042 |
| BstEII | GGTNACC | 2 cut(s) | 5164, 7447 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1131, 1542, 1860, 6122 |
| BstFNI | CGCG | 4 cut(s) | 2583, 8070, 9560, 10035 |
| BstH2I | RGCGCY | 4 cut(s) | 2761, 3707, 5249, 10175 |
| BstHHI | GCGC | 7 cut(s) | 2760, 3706, 5248, 5908, 10035, 10174, 11290 |
| BstNSI | RCATGY | 9 cut(s) | 968, 1420, 1833, 2252, 4734, 6683, 7038, 8418, 8739 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 9561 |
| BstPI | GGTNACC | 2 cut(s) | 5164, 7447 |
| BstSLI | GKGCMC | 8 cut(s) | 1053, 1681, 3409, 3441, 6095, 9243, 11256, 11347 |
| BstSNI | TACGTA | 1 cut(s) | 3510 |
| BstUI | CGCG | 4 cut(s) | 2583, 8070, 9560, 10035 |
| BstV2I | GAAGAC | 6 cut(s) | 342, 1657, 5606, 8151, 9240, 11307 |
| BstX2I | RGATCY | 8 cut(s) | 482, 2835, 2966, 5399, 6574, 6821, 7205, 8779 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 2105, 3209, 6460, 10444, 10633, 11263 |
| BstYI | RGATCY | 8 cut(s) | 482, 2835, 2966, 5399, 6574, 6821, 7205, 8779 |
| Bsu15I | ATCGAT | 2 cut(s) | 4087, 11331 |
| Bsu36I | CCTNAGG | 3 cut(s) | 4199, 9387, 9711 |
| BsuI | GTATCC | 6 cut(s) | 2194, 2822, 5263, 6863, 6991, 8692 |
| BsuTUI | ATCGAT | 2 cut(s) | 4087, 11331 |
| BtgI | CCRYGG | 8 cut(s) | 261, 1257, 5188, 6087, 6339, 7293, 7626, 9042 |
| BtgZI | GCGATG | 4 cut(s) | 3575, 4835, 10410, 10599 |
| BtrI | CACGTC | 4 cut(s) | 1874, 6914, 9531, 11305 |
| BtsI | GCAGTG | 7 cut(s) | 4657, 7113, 7306, 7406, 8924, 9055, 11138 |
| BtuMI | TCGCGA | 1 cut(s) | 8070 |
| BveI | ACCTGC | 3 cut(s) | 5899, 6008, 7796 |
| CciI | TCATGA | 1 cut(s) | 517 |
| CfoI | GCGC | 7 cut(s) | 2760, 3706, 5248, 5908, 10035, 10174, 11290 |
| Cfr10I | RCCGGY | 2 cut(s) | 5290, 5803 |
| ClaI | ATCGAT | 2 cut(s) | 4087, 11331 |
| CseI | GACGC | 9 cut(s) | 5379, 7080, 8781, 9293, 9566, 9698, 10584, 10782, 10881 |
| CsiI | ACCWGGT | 2 cut(s) | 597, 757 |
| CspAI | ACCGGT | 2 cut(s) | 5290, 5803 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5734, 5769 |
| DraI | TTTAAA | 3 cut(s) | 4011, 4632, 5685 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 599, 9655 |
| DriI | GACNNNNNGTC | 2 cut(s) | 544, 3872 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 599, 9655 |
| EaeI | YGGCCR | 5 cut(s) | 393, 4408, 7005, 8706, 9476 |
| Eam1104I | CTCTTC | 9 cut(s) | 635, 3968, 4409, 4552, 4950, 4965, 6267, 6415, 9688 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 544, 3872 |
| EarI | CTCTTC | 9 cut(s) | 635, 3968, 4409, 4552, 4950, 4965, 6267, 6415, 9688 |
| EciI | GGCGGA | 1 cut(s) | 9845 |
| Ecl136II | GAGCTC | 4 cut(s) | 2448, 2491, 5852, 11183 |
| Eco105I | TACGTA | 1 cut(s) | 3510 |
| Eco31I | GGTCTC | 3 cut(s) | 847, 6209, 10217 |
| Eco32I | GATATC | 2 cut(s) | 252, 7971 |
| Eco47I | GGWCC | 8 cut(s) | 418, 449, 3341, 4447, 5288, 6560, 7808, 9563 |
| Eco47III | AGCGCT | 2 cut(s) | 2759, 10173 |
| Eco53kI | GAGCTC | 4 cut(s) | 2448, 2491, 5852, 11183 |
| Eco72I | CACGTG | 1 cut(s) | 5966 |
| Eco81I | CCTNAGG | 3 cut(s) | 4199, 9387, 9711 |
| Eco88I | CYCGRG | 2 cut(s) | 541, 1764 |
| Eco91I | GGTNACC | 2 cut(s) | 5164, 7447 |
| EcoICRI | GAGCTC | 4 cut(s) | 2448, 2491, 5852, 11183 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1131, 1542, 1860, 6122 |
| EcoO109I | RGGNCCY | 8 cut(s) | 3341, 3406, 3438, 6092, 7331, 7808, 9080, 9563 |
| EcoO65I | GGTNACC | 2 cut(s) | 5164, 7447 |
| EcoRI | GAATTC | 3 cut(s) | 2673, 2693, 8968 |
| EcoRV | GATATC | 2 cut(s) | 252, 7971 |
| EcoT22I | ATGCAT | 2 cut(s) | 7903, 8830 |
| Esp3I | CGTCTC | 8 cut(s) | 2531, 3445, 3854, 8066, 10413, 10602, 10800, 11228 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1348, 1380, 2681, 2713, 3086, 3118 |
| FaqI | GGGAC | 9 cut(s) | 547, 605, 1058, 4911, 4987, 5741, 6861, 7510, 9484 |
| FauI | CCCGC | 6 cut(s) | 175, 4923, 5756, 5864, 9553, 9975 |
| FauNDI | CATATG | 1 cut(s) | 4951 |
| FbaI | TGATCA | 6 cut(s) | 514, 2200, 3802, 3837, 7270, 9019 |
| FblI | GTMKAC | 2 cut(s) | 3045, 7158 |
| GlaI | GCGC | 7 cut(s) | 2759, 3705, 5247, 5907, 10034, 10173, 11289 |
| GsaI | CCCAGC | 3 cut(s) | 2150, 2285, 6548 |
| HaeII | RGCGCY | 4 cut(s) | 2761, 3707, 5249, 10175 |
| HgaI | GACGC | 9 cut(s) | 5379, 7080, 8781, 9293, 9566, 9698, 10584, 10782, 10881 |
| HhaI | GCGC | 7 cut(s) | 2760, 3706, 5248, 5908, 10035, 10174, 11290 |
| Hin1I | GRCGYC | 2 cut(s) | 5390, 10793 |
| Hin6I | GCGC | 7 cut(s) | 2758, 3704, 5246, 5906, 10033, 10172, 11288 |
| HinP1I | GCGC | 7 cut(s) | 2758, 3704, 5246, 5906, 10033, 10172, 11288 |
| HincII | GTYRAC | 9 cut(s) | 1113, 1582, 1888, 3663, 6052, 7770, 7879, 9039, 10729 |
| HindII | GTYRAC | 9 cut(s) | 1113, 1582, 1888, 3663, 6052, 7770, 7879, 9039, 10729 |
| HindIII | AAGCTT | 4 cut(s) | 2960, 3962, 4070, 9453 |
| HpaI | GTTAAC | 5 cut(s) | 1888, 3663, 6052, 7879, 10729 |
| Hpy99I | CGWCG | 1 cut(s) | 6516 |
| Hsp92I | GRCGYC | 2 cut(s) | 5390, 10793 |
| HspAI | GCGC | 7 cut(s) | 2758, 3704, 5246, 5906, 10033, 10172, 11288 |
| Kpn2I | TCCGGA | 2 cut(s) | 2529, 7400 |
| KpnI | GGTACC | 1 cut(s) | 4198 |
| Ksp22I | TGATCA | 6 cut(s) | 514, 2200, 3802, 3837, 7270, 9019 |
| KspAI | GTTAAC | 5 cut(s) | 1888, 3663, 6052, 7879, 10729 |
| LguI | GCTCTTC | 2 cut(s) | 4950, 6267 |
| MabI | ACCWGGT | 2 cut(s) | 597, 757 |
| MfeI | CAATTG | 3 cut(s) | 2190, 5450, 6804 |
| MflI | RGATCY | 8 cut(s) | 482, 2835, 2966, 5399, 6574, 6821, 7205, 8779 |
| MlsI | TGGCCA | 3 cut(s) | 4410, 8708, 9478 |
| MluNI | TGGCCA | 3 cut(s) | 4410, 8708, 9478 |
| Mox20I | TGGCCA | 3 cut(s) | 4410, 8708, 9478 |
| Mph1103I | ATGCAT | 2 cut(s) | 7903, 8830 |
| MroI | TCCGGA | 2 cut(s) | 2529, 7400 |
| MroXI | GAANNNNTTC | 7 cut(s) | 1531, 2549, 2768, 2789, 4808, 6487, 10134 |
| MscI | TGGCCA | 3 cut(s) | 4410, 8708, 9478 |
| Msp20I | TGGCCA | 3 cut(s) | 4410, 8708, 9478 |
| MspA1I | CMGCKG | 7 cut(s) | 1989, 3800, 4481, 6200, 6548, 7214, 8951 |
| MspCI | CTTAAG | 2 cut(s) | 2384, 3214 |
| MunI | CAATTG | 3 cut(s) | 2190, 5450, 6804 |
| Mva1269I | GAATGC | 8 cut(s) | 318, 1205, 3607, 4293, 7093, 7319, 7578, 8794 |
| MvnI | CGCG | 4 cut(s) | 2583, 8070, 9560, 10035 |
| NciI | CCSGG | 4 cut(s) | 590, 3436, 5530, 6327 |
| NcoI | CCATGG | 7 cut(s) | 261, 1257, 6087, 6339, 7293, 7626, 9042 |
| NdeI | CATATG | 1 cut(s) | 4951 |
| NmeAIII | GCCGAG | 1 cut(s) | 4759 |
| NruI | TCGCGA | 1 cut(s) | 8070 |
| NsiI | ATGCAT | 2 cut(s) | 7903, 8830 |
| NspI | RCATGY | 9 cut(s) | 968, 1420, 1833, 2252, 4734, 6683, 7038, 8418, 8739 |
| NspV | TTCGAA | 1 cut(s) | 7085 |
| OliI | CACNNNNGTG | 1 cut(s) | 1227 |
| PaeI | GCATGC | 2 cut(s) | 968, 1420 |
| PaeR7I | CTCGAG | 2 cut(s) | 541, 1764 |
| PagI | TCATGA | 1 cut(s) | 517 |
| PaqCI | CACCTGC | 2 cut(s) | 5899, 6008 |
| PciI | ACATGT | 3 cut(s) | 2248, 6679, 8414 |
| PciSI | GCTCTTC | 2 cut(s) | 4950, 6267 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2815, 3939 |
| PctI | GAATGC | 8 cut(s) | 318, 1205, 3607, 4293, 7093, 7319, 7578, 8794 |
| PdmI | GAANNNNTTC | 7 cut(s) | 1531, 2549, 2768, 2789, 4808, 6487, 10134 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 446, 1127, 7021, 8722 |
| PfoI | TCCNGGA | 2 cut(s) | 1126, 1698 |
| PinAI | ACCGGT | 2 cut(s) | 5290, 5803 |
| PmaCI | CACGTG | 1 cut(s) | 5966 |
| PmlI | CACGTG | 1 cut(s) | 5966 |
| Ppu21I | YACGTR | 2 cut(s) | 3510, 5966 |
| PpuMI | RGGWCCY | 3 cut(s) | 3341, 7808, 9563 |
| PscI | ACATGT | 3 cut(s) | 2248, 6679, 8414 |
| PshAI | GACNNNNGTC | 1 cut(s) | 9561 |
| PshBI | ATTAAT | 3 cut(s) | 276, 2868, 3417 |
| PsiI | TTATAA | 1 cut(s) | 4055 |
| Psp124BI | GAGCTC | 4 cut(s) | 2450, 2493, 5854, 11185 |
| Psp5II | RGGWCCY | 3 cut(s) | 3341, 7808, 9563 |
| PspCI | CACGTG | 1 cut(s) | 5966 |
| PspEI | GGTNACC | 2 cut(s) | 5164, 7447 |
| PspFI | CCCAGC | 3 cut(s) | 2146, 2281, 6544 |
| PspOMI | GGGCCC | 3 cut(s) | 3405, 3437, 6091 |
| PspPPI | RGGWCCY | 3 cut(s) | 3341, 7808, 9563 |
| PspXI | VCTCGAGB | 1 cut(s) | 541 |
| PstI | CTGCAG | 5 cut(s) | 4333, 4480, 5233, 5659, 8931 |
| PsuI | RGATCY | 8 cut(s) | 482, 2835, 2966, 5399, 6574, 6821, 7205, 8779 |
| PvuII | CAGCTG | 7 cut(s) | 1989, 3800, 4481, 6200, 6548, 7214, 8951 |
| RruI | TCGCGA | 1 cut(s) | 8070 |
| SacI | GAGCTC | 4 cut(s) | 2450, 2493, 5854, 11185 |
| SapI | GCTCTTC | 2 cut(s) | 4950, 6267 |
| ScaI | AGTACT | 2 cut(s) | 3861, 5458 |
| SexAI | ACCWGGT | 2 cut(s) | 597, 757 |
| Sfr274I | CTCGAG | 2 cut(s) | 541, 1764 |
| SfuI | TTCGAA | 1 cut(s) | 7085 |
| SinI | GGWCC | 8 cut(s) | 418, 449, 3341, 4447, 5288, 6560, 7808, 9563 |
| SlaI | CTCGAG | 2 cut(s) | 541, 1764 |
| SnaBI | TACGTA | 1 cut(s) | 3510 |
| SphI | GCATGC | 2 cut(s) | 968, 1420 |
| SspI | AATATT | 3 cut(s) | 2116, 4347, 4565 |
| SstI | GAGCTC | 4 cut(s) | 2450, 2493, 5854, 11185 |
| TatI | WGTACW | 6 cut(s) | 458, 2313, 3859, 4735, 5456, 8605 |
| TspGWI | ACGGA | 7 cut(s) | 87, 2585, 4370, 4982, 5416, 5604, 10714 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 446, 1127, 7021, 8722 |
| Vha464I | CTTAAG | 2 cut(s) | 2384, 3214 |
| VneI | GTGCAC | 1 cut(s) | 1677 |
| VpaK11BI | GGWCC | 8 cut(s) | 418, 449, 3341, 4447, 5288, 6560, 7808, 9563 |
| VspI | ATTAAT | 3 cut(s) | 276, 2868, 3417 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1131, 1542, 1860, 6122 |
| XbaI | TCTAGA | 3 cut(s) | 1367, 2162, 9586 |
| XceI | RCATGY | 9 cut(s) | 968, 1420, 1833, 2252, 4734, 6683, 7038, 8418, 8739 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 388 |
| XhoI | CTCGAG | 2 cut(s) | 541, 1764 |
| XmaJI | CCTAGG | 1 cut(s) | 3277 |
| XmiI | GTMKAC | 2 cut(s) | 3045, 7158 |
| XmnI | GAANNNNTTC | 7 cut(s) | 1531, 2549, 2768, 2789, 4808, 6487, 10134 |
| ZrmI | AGTACT | 2 cut(s) | 3861, 5458 |
| Zsp2I | ATGCAT | 2 cut(s) | 7903, 8830 |