RLG00000023460

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000651
Physical Location & Seq
Forward (+)
24100786 .. 24104449
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023460

Sequence Viewer

Length: 1212 bp
ATGCAGGTAGGGAGGCCGAAGACCTCTGTTGATGTGAAATGGAATGAAGGCTATGTGAATACGATTGTTTGTACTCACATCGACCAGGGTGCAAAGAATGTTGTCTGCATGAGTGGCAGTATTGAAATGCAGATGGGCAGTAAGATCTGTAGTGTAGTGTCTCGAGGAGCATCCAGTTCATGTTGTTACCGACTGCAGCCGGGGAAATCGGGAAATAAATTTGGTGGCTTATCCCTCACCAAGAGTCGTCCATCTGAAATTGGCCAAACACCCCATGGAAGCTGTTTCAGGTCTTGCTTCTCCATGGATATGGGCAACTCACGGTCATTAACAGTTAATGCTAGAAAACCTCAGAAACGATGTCTAGAAATTTCATTGGCATGTCAGGGTATGAAAACAAGACTTCTGGTCCCAAGACAAGGAATGCTTCCCAAAATCAAGTGTAATGTGGGCCCAGTGTCGTGGCCACAAGGATGTGCGTCTGCTGGTTTGATTTTTGGGTTGCTGATTTGTAATTCTTCTGAGCCAACACACGCTGAAGCAGCTCATAAGACTGATGATAAGGAATATGACGGTGATTTGTCATATTCACATGGAAAAAAAGTTTATACTGATTATTCCATTATTGGAATACCTGGAGATGGAAGGTGCATGTTCCGCTCCATTGCTCATGGCGCTTGTTTACGAGCTGGAAAATCAGCTCCTAGTCCAAGCCTTCAGAGAGAATTAGCAGATGACTTGAGAGCTAGAGTTGCAGATGAGTTTATCAAAAGGAGAGAAGAGACAGAATGGTTTGTTGAAGGTGATTTTGACACATATGTCTCCCAAATAAGAAAGCCACATGTATGGGGAGGCGAGCCCGAATTGTTAATGGCTTCACATGTTCTTGAAATGCCGATCACAGTATACATGTATGATGAACAGGCTGGCGGCTTGATAACCATTGCTGAGTATGGGCAAGAATATGGGAAGGGAAATCCAATCAGAGTTCTCTATCATGGTTTTGGCCATTATGATGCATTGCAAATTCCGGGAAAGAGTGGTGATACGTACATTATGTTGCAATTGTACATGTCTTCTTTGTTTGCGGAGAGTTTGTACAAGGGAAGTGATCTCCAGTCGTCGTGTACGCATGGCCTTCCATCTTTTTCAATCTTCTCATCTTTTCAGACGGTTGCATCATTTGCTAAAGACTTCAAAGTGTTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

404

Amino Acids

44.24

Weight (kDa)

8.41

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 212 - 338 3.9e-28 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 818
AccBSI CCGCTC 1 cut(s) 660
AccI GTMKAC 1 cut(s) 906
AciI CCGC 3 cut(s) 658, 930, 1088
AcoI YGGCCR 3 cut(s) 262, 464, 1006
AcsI RAATTY 3 cut(s) 218, 369, 1026
AcuI CTGAAG 2 cut(s) 558, 701
AfaI GTAC 5 cut(s) 73, 1052, 1070, 1100, 1129
AfiI CCNNNNNNNGG 2 cut(s) 419, 641
AflIII ACRYGT 4 cut(s) 841, 880, 909, 1071
AgsI TTSAA 5 cut(s) 125, 800, 890, 1152, 1198
AhdI GACNNNNNGTC 1 cut(s) 407
AjnI CCWGG 2 cut(s) 84, 634
AluBI AGCT 5 cut(s) 282, 545, 689, 701, 746
AluI AGCT 5 cut(s) 282, 545, 689, 701, 746
Alw26I GTCTC 3 cut(s) 165, 776, 826
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 6 cut(s) 14, 262, 451, 464, 1006, 1135
ApaI GGGCCC 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 196, 542
ApoI RAATTY 3 cut(s) 218, 369, 1026
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 3 cut(s) 409, 451, 452
AsuC2I CCSGG 2 cut(s) 201, 1032
AsuHPI GGTGA 4 cut(s) 229, 587, 815, 1055
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 455
BalI TGGCCA 3 cut(s) 264, 466, 1008
BanII GRGCYC 2 cut(s) 455, 861
BbsI GAAGAC 2 cut(s) 26, 1068
BbvI GCAGC 2 cut(s) 208, 554
BccI CCATC 4 cut(s) 127, 259, 635, 1150
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 2 cut(s) 86, 636
BcnI CCSGG 2 cut(s) 201, 1032
BcoDI GTCTC 3 cut(s) 165, 776, 826
BfaI CTAG 4 cut(s) 342, 365, 705, 747
BfmI CTRYAG 2 cut(s) 148, 194
BfoI RGCGCY 1 cut(s) 678
BglII AGATCT 1 cut(s) 144
BisI GCNGC 3 cut(s) 197, 543, 931
BlsI GCNGC 3 cut(s) 198, 544, 932
Bme1390I CCNGG 4 cut(s) 86, 201, 636, 1032
Bme18I GGWCC 1 cut(s) 409
BmeRI GACNNNNNGTC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 3 cut(s) 409, 451, 452
BmiI GGNNCC 2 cut(s) 411, 453
BmrFI CCNGG 4 cut(s) 86, 201, 636, 1032
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 3 cut(s) 179, 1006, 1187
BmuI ACTGGG 1 cut(s) 449
BpiI GAAGAC 2 cut(s) 26, 1068
BpmI CTGGAG 2 cut(s) 657, 1100
BpuEI CTTGAG 1 cut(s) 760
BpuMI CCSGG 2 cut(s) 201, 1032
BsaAI YACGTR 1 cut(s) 1050
BsaJI CCNNGG 4 cut(s) 85, 200, 274, 303
BsaXI ACNNNNNCTCC 2 cut(s) 1082, 1112
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 641
Bse1I ACTGG 3 cut(s) 174, 455, 1117
Bse3DI GCAATG 3 cut(s) 663, 942, 1019
BseBI CCWGG 2 cut(s) 86, 636
BseDI CCNNGG 4 cut(s) 85, 200, 274, 303
BseGI GGATG 2 cut(s) 170, 479
BseLI CCNNNNNNNGG 2 cut(s) 419, 641
BseMI GCAATG 3 cut(s) 663, 942, 1019
BseMII CTCAG 3 cut(s) 365, 513, 939
BseNI ACTGG 3 cut(s) 174, 455, 1117
BseRI GAGGAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 2 cut(s) 208, 554
BshFI GGCC 6 cut(s) 16, 264, 453, 466, 1008, 1137
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 200, 1031
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 419, 641
BsmAI GTCTC 3 cut(s) 165, 776, 826
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 6 cut(s) 16, 264, 453, 466, 1008, 1137
BsoBI CYCGRG 1 cut(s) 162
Bsp120I GGGCCC 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 455, 861
Bsp1407I TGTACA 2 cut(s) 1068, 1098
Bsp143I GATC 3 cut(s) 144, 897, 1111
Bsp19I CCATGG 2 cut(s) 274, 303
BspACI CCGC 3 cut(s) 658, 930, 1088
BspANI GGCC 6 cut(s) 16, 264, 453, 466, 1008, 1137
BspCNI CTCAG 3 cut(s) 364, 514, 940
BspLI GGNNCC 2 cut(s) 411, 453
BspMAI CTGCAG 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 660
BsrDI GCAATG 3 cut(s) 663, 942, 1019
BsrGI TGTACA 2 cut(s) 1068, 1098
BsrI ACTGG 3 cut(s) 174, 455, 1117
BssECI CCNNGG 4 cut(s) 85, 200, 274, 303
BssMI GATC 3 cut(s) 144, 897, 1111
BssNAI GTATAC 1 cut(s) 907
BssT1I CCWWGG 2 cut(s) 274, 303
Bst1107I GTATAC 1 cut(s) 907
Bst2UI CCWGG 2 cut(s) 86, 636
Bst4CI ACNGT 5 cut(s) 324, 334, 575, 904, 1174
Bst6I CTCTTC 1 cut(s) 774
BstAPI GCANNNNNTGC 1 cut(s) 1184
BstAUI TGTACA 2 cut(s) 1068, 1098
BstBAI YACGTR 1 cut(s) 1050
BstC8I GCNNGC 2 cut(s) 857, 928
BstDEI CTNAG 3 cut(s) 351, 522, 948
BstDSI CCRYGG 2 cut(s) 274, 303
BstF5I GGATG 2 cut(s) 170, 479
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 3 cut(s) 147, 900, 1114
BstMAI GTCTC 3 cut(s) 165, 776, 826
BstMBI GATC 3 cut(s) 144, 897, 1111
BstMWI GCNNNNNNNGC 6 cut(s) 114, 542, 657, 674, 752, 1184
BstNI CCWGG 2 cut(s) 86, 636
BstNSI RCATGY 6 cut(s) 384, 655, 845, 884, 913, 1075
BstSCI CCNGG 4 cut(s) 84, 199, 634, 1030
BstSFI CTRYAG 2 cut(s) 148, 194
BstSLI GKGCMC 1 cut(s) 455
BstSNI TACGTA 1 cut(s) 1050
BstV1I GCAGC 2 cut(s) 208, 554
BstV2I GAAGAC 2 cut(s) 26, 1068
BstX2I RGATCY 1 cut(s) 144
BstXI CCANNNNNNTGG 3 cut(s) 310, 462, 846
BstYI RGATCY 1 cut(s) 144
BstZ17I GTATAC 1 cut(s) 907
BsuRI GGCC 6 cut(s) 16, 264, 453, 466, 1008, 1137
BtgI CCRYGG 2 cut(s) 274, 303
BtsCI GGATG 2 cut(s) 170, 479
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 2 cut(s) 857, 928
CfoI GCGC 1 cut(s) 677
Cfr13I GGNCC 3 cut(s) 409, 451, 452
CseI GACGC 1 cut(s) 468
Csp6I GTAC 5 cut(s) 72, 1051, 1069, 1099, 1128
CviQI GTAC 5 cut(s) 72, 1051, 1069, 1099, 1128
DdeI CTNAG 3 cut(s) 351, 522, 948
DpnI GATC 3 cut(s) 146, 899, 1113
DpnII GATC 3 cut(s) 144, 897, 1111
DrdI GACNNNNNNGTC 1 cut(s) 818
DriI GACNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 818
EaeI YGGCCR 3 cut(s) 262, 464, 1006
Eam1104I CTCTTC 1 cut(s) 774
Eam1105I GACNNNNNGTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 774
Eco105I TACGTA 1 cut(s) 1050
Eco130I CCWWGG 2 cut(s) 274, 303
Eco24I GRGCYC 2 cut(s) 455, 861
Eco47I GGWCC 1 cut(s) 409
Eco57I CTGAAG 2 cut(s) 558, 701
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 84, 634
EcoT14I CCWWGG 2 cut(s) 274, 303
EcoT22I ATGCAT 1 cut(s) 1021
EcoT38I GRGCYC 2 cut(s) 455, 861
ErhI CCWWGG 2 cut(s) 274, 303
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 395
FauNDI CATATG 1 cut(s) 817
FblI GTMKAC 1 cut(s) 906
Fnu4HI GCNGC 3 cut(s) 197, 543, 931
FokI GGATG 2 cut(s) 157, 486
FriOI GRGCYC 2 cut(s) 455, 861
Fsp4HI GCNGC 3 cut(s) 197, 543, 931
FspBI CTAG 4 cut(s) 342, 365, 705, 747
GlaI GCGC 1 cut(s) 676
GluI GCNGC 3 cut(s) 197, 543, 931
GsuI CTGGAG 2 cut(s) 657, 1100
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 6 cut(s) 16, 264, 453, 466, 1008, 1137
HapII CCGG 2 cut(s) 200, 1031
HgaI GACGC 1 cut(s) 468
HhaI GCGC 1 cut(s) 677
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HinfI GANTC 1 cut(s) 244
HpaII CCGG 2 cut(s) 200, 1031
HphI GGTGA 4 cut(s) 229, 587, 815, 1055
Hpy166II GTNNAC 3 cut(s) 683, 907, 1128
Hpy188I TCNGA 6 cut(s) 256, 354, 523, 720, 986, 1170
Hpy188III TCNNGA 4 cut(s) 162, 210, 365, 887
Hpy8I GTNNAC 3 cut(s) 683, 907, 1128
Hpy99I CGWCG 1 cut(s) 1126
HpyAV CCTTC 6 cut(s) 41, 639, 725, 794, 964, 1148
HpyCH4III ACNGT 5 cut(s) 324, 334, 575, 904, 1174
HpyCH4IV ACGT 1 cut(s) 1049
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 542, 657, 674, 752, 1184
HpyF3I CTNAG 3 cut(s) 351, 522, 948
HpySE526I ACGT 1 cut(s) 1049
HspAI GCGC 1 cut(s) 675
Kzo9I GATC 3 cut(s) 144, 897, 1111
LmnI GCTCC 3 cut(s) 167, 665, 706
Lsp1109I GCAGC 2 cut(s) 208, 554
LweI GCATC 3 cut(s) 179, 1006, 1187
MaeI CTAG 4 cut(s) 342, 365, 705, 747
MaeII ACGT 1 cut(s) 1049
MaeIII GTNAC 1 cut(s) 185
MalI GATC 3 cut(s) 146, 899, 1113
MbiI CCGCTC 1 cut(s) 660
MboI GATC 3 cut(s) 144, 897, 1111
MboII GAAGA 5 cut(s) 31, 510, 791, 1068, 1147
MfeI CAATTG 1 cut(s) 1064
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 455, 861
MlsI TGGCCA 3 cut(s) 264, 466, 1008
MluCI AATT 8 cut(s) 218, 258, 369, 514, 725, 863, 1026, 1064
MluNI TGGCCA 3 cut(s) 264, 466, 1008
MlyI GAGTC 1 cut(s) 253
MnlI CCTC 6 cut(s) 6, 34, 158, 245, 360, 845
Mox20I TGGCCA 3 cut(s) 264, 466, 1008
Mph1103I ATGCAT 1 cut(s) 1021
MscI TGGCCA 3 cut(s) 264, 466, 1008
MseI TTAA 3 cut(s) 329, 336, 869
MslI CAYNNNNRTG 5 cut(s) 308, 379, 472, 844, 1014
Msp20I TGGCCA 3 cut(s) 264, 466, 1008
MspI CCGG 2 cut(s) 200, 1031
MspR9I CCNGG 4 cut(s) 86, 201, 636, 1032
MunI CAATTG 1 cut(s) 1064
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 2 cut(s) 86, 636
MwoI GCNNNNNNNGC 6 cut(s) 114, 542, 657, 674, 752, 1184
NciI CCSGG 2 cut(s) 201, 1032
NcoI CCATGG 2 cut(s) 274, 303
NdeI CATATG 1 cut(s) 817
NdeII GATC 3 cut(s) 144, 897, 1111
NlaIV GGNNCC 2 cut(s) 411, 453
NsiI ATGCAT 1 cut(s) 1021
NspI RCATGY 6 cut(s) 384, 655, 845, 884, 913, 1075
PaeR7I CTCGAG 1 cut(s) 162
PciI ACATGT 4 cut(s) 841, 880, 909, 1071
PctI GAATGC 1 cut(s) 429
PfoI TCCNGGA 1 cut(s) 1030
PkrI GCNGC 3 cut(s) 198, 544, 932
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
Ppu21I YACGTR 1 cut(s) 1050
PscI ACATGT 4 cut(s) 841, 880, 909, 1071
Psp6I CCWGG 2 cut(s) 84, 634
PspGI CCWGG 2 cut(s) 84, 634
PspN4I GGNNCC 2 cut(s) 411, 453
PspOMI GGGCCC 1 cut(s) 451
PspPI GGNCC 3 cut(s) 409, 451, 452
PstI CTGCAG 1 cut(s) 198
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 5 cut(s) 73, 1052, 1070, 1100, 1129
RsaNI GTAC 5 cut(s) 72, 1051, 1069, 1099, 1128
RseI CAYNNNNRTG 5 cut(s) 308, 379, 472, 844, 1014
SaqAI TTAA 3 cut(s) 329, 336, 869
SatI GCNGC 3 cut(s) 197, 543, 931
Sau3AI GATC 3 cut(s) 144, 897, 1111
Sau96I GGNCC 3 cut(s) 409, 451, 452
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 4 cut(s) 86, 201, 636, 1032
SduI GDGCHC 2 cut(s) 455, 861
SfaNI GCATC 3 cut(s) 179, 1006, 1187
SfcI CTRYAG 2 cut(s) 148, 194
Sfr274I CTCGAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 162
SmiMI CAYNNNNRTG 5 cut(s) 308, 379, 472, 844, 1014
SmlI CTYRAG 2 cut(s) 162, 739
SmoI CTYRAG 2 cut(s) 162, 739
SnaBI TACGTA 1 cut(s) 1050
Sse9I AATT 8 cut(s) 218, 258, 369, 514, 725, 863, 1026, 1064
SsiI CCGC 3 cut(s) 658, 930, 1088
SspMI CTAG 4 cut(s) 342, 365, 705, 747
StyD4I CCNGG 4 cut(s) 84, 199, 634, 1030
StyI CCWWGG 2 cut(s) 274, 303
TaaI ACNGT 5 cut(s) 324, 334, 575, 904, 1174
TaiI ACGT 1 cut(s) 1052
TaqI TCGA 2 cut(s) 81, 163
TasI AATT 8 cut(s) 218, 258, 369, 514, 725, 863, 1026, 1064
TatI WGTACW 3 cut(s) 71, 1068, 1098
TauI GCSGC 1 cut(s) 933
Tru1I TTAA 3 cut(s) 329, 336, 869
Tru9I TTAA 3 cut(s) 329, 336, 869
TscAI CASTG 1 cut(s) 462
TseI GCWGC 2 cut(s) 196, 542
TspDTI ATGAA 5 cut(s) 60, 168, 363, 407, 933
TspRI CASTG 1 cut(s) 462
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 3 cut(s) 218, 369, 1026
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 6 cut(s) 384, 655, 845, 884, 913, 1075
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 906
XspI CTAG 4 cut(s) 342, 365, 705, 747
Zsp2I ATGCAT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.