Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000651

Physical Location & Seq

Genomic Coordinates Reverse (-)

12412199 .. 12413577

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGACTTTATGGTTATTTTGTACAGGCATACGCGGAGATGGAAGGTGTTTGTTTCGATTTGTGGTTCATGGAGCTTGTCTAAGAGCAGGGAAGCCATCTCCAAGTGAAAGCCATCAGAAAGAACTTGCAGATGAGCTTAGAGAGAAGGTAGCAGATGAATTCATTAAGAGGAGGGCTGACATTGAATGGTTTCTTGAAGATGATTTTGAGAGATACATTGTACAGCTGTGGCAACCCCAGATTTGGGGAGGCGAGCCTGAGTTGCTTATGTCCTCACATGTCCTACAAAAACATGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

100

Amino Acids

11.74

Weight (kDa)

6.06

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTU	PF02338	11 - 97	3.8e-17	OTU-like cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57810 AT3G57810 AT3G57810 AT3G57810
fragaria_vesca	FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_6g22905
malus_domestica	MD14G1063700.v1.1 MD16G1115500.v1.1
prunus_persica	Prupe.1G231600_v2.0.a1 Prupe.1G231600_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1
pyrus_communis	pycom14g05150 pycom16g09800
rosa_chinensis	RchiOBHm_Chr2g0153721 RchiOBHm_Chr2g0156231 RchiOBHm_Chr3g0465711 RchiOBHm_Chr3g0480701 RchiOBHm_Chr4g0430871
rosa_laevigata	RLG00000006944 RLG00000023460
rosa_multiflora	Rmu_sc0001135.1_g000009 Rmu_sc0002620.1_g000002 Rmu_sc0003902.1_g000027 Rmu_sc0006263.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372540 Rroxscaffold_6G00401150
rosa_rugosa	Rorug03G0184800 Rorug03G0184900 Rorug04G0246100 Rorug04G0246200 Rorug04G0246300 Rorug04G0246400 Rorug04G0246500 Rorug04G0246600
rosa_samantha	Rh3AG237100 Rh3BG270200 Rh3CG266400 Rh3DG262500 Rh4AG302400 Rh4AG303300 Rh4BG310500 Rh4CG326900 Rh4DG306600
rosa_wichuraiana	Rw3G021230 Rw4G026280 Rw5G016580 Rw6G016010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	158
AfaI	GTAC	2 cut(s)	22, 222
AfiI	CCNNNNNNNGG	2 cut(s)	243, 244
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	185, 197
AluBI	AGCT	3 cut(s)	74, 136, 226
AluI	AGCT	3 cut(s)	74, 136, 226
ApoI	RAATTY	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	189
BccI	CCATC	3 cut(s)	32, 103, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 244
BseLI	CCNNNNNNNGG	2 cut(s)	243, 244
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	243, 244
Bsp1407I	TGTACA	2 cut(s)	20, 220
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	33
BsrGI	TGTACA	2 cut(s)	20, 220
BstAUI	TGTACA	2 cut(s)	20, 220
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	3 cut(s)	80, 137, 258
BstFNI	CGCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	281
BstUI	CGCG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	21, 221
CviAII	CATG	3 cut(s)	68, 278, 293
CviJI	RGCY	7 cut(s)	74, 94, 111, 136, 176, 226, 256
CviKI_1	RGCY	7 cut(s)	74, 94, 111, 136, 176, 226, 256
CviQI	GTAC	2 cut(s)	21, 221
DdeI	CTNAG	3 cut(s)	80, 137, 258
EcoRI	GAATTC	1 cut(s)	158
FaeI	CATG	3 cut(s)	71, 281, 296
FaiI	YATR	6 cut(s)	10, 29, 69, 269, 279, 294
FatI	CATG	3 cut(s)	67, 277, 292
Hin1II	CATG	3 cut(s)	71, 281, 296
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	36, 139
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	3 cut(s)	80, 137, 258
Hsp92II	CATG	3 cut(s)	71, 281, 296
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	4 cut(s)	9, 72, 251, 270
MboII	GAAGA	1 cut(s)	209
MluCI	AATT	1 cut(s)	158
MnlI	CCTC	4 cut(s)	162, 165, 242, 283
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	262
NlaIII	CATG	3 cut(s)	71, 281, 296
NspI	RCATGY	1 cut(s)	281
PciI	ACATGT	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	189
PscI	ACATGT	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	2 cut(s)	22, 222
RsaNI	GTAC	2 cut(s)	21, 221
SaqAI	TTAA	1 cut(s)	165
SetI	ASST	5 cut(s)	47, 76, 138, 150, 228
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	33
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	158
TatI	WGTACW	2 cut(s)	20, 220
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TspDTI	ATGAA	3 cut(s)	56, 151, 171
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.