Rh4BG310500

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000651
Physical Location & Seq
Forward (+)
47892845 .. 47895658
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG310500.1

Sequence Viewer

Length: 489 bp
ATGACTTTATGGTTATTTTGTACAGGCATACGCGGAGATGGAAGGTGTTTGTTTCGATCTGTGGTTCATGGAGCTTGTCTAAGAGCAGGGAAGCCATCTCCAAGTGACAGCCATCAGAAAGAACTTGCAGATGAGCTTAGAGAGAAGGTAGCAGATGAATTCATTAAGAGGAGGGCTGACACTGAATGGTTTCTTGAAGATGATTTTGAGAGATACGTTGTACAGATGCGGCAACCCCACATTTGGGGAGGCGAGCCTGAGTTGCTTATGTCCTCGCATGTCCTACAGATACCGATTACAGTTTATATGCGGGACAAGAATTCTAGGAGTCTCAGAATCATAGCTGAATATGGTAAAGAGTATGGTAAGGATAACCCTATCCGTGTACTTTATCATGGCTATGGACACTACGATGCATTGCGTGGTCCAAGTCCAACTACTGGTGCAGCGTCCAAGCCGTTGAAACAAAGAACAGAGATGCAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

162

Amino Acids

18.72

Weight (kDa)

8.42

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 11 - 137 1.3e-28 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 440
AccII CGCG 1 cut(s) 33
AciI CCGC 3 cut(s) 33, 229, 310
AcsI RAATTY 2 cut(s) 158, 319
AfaI GTAC 3 cut(s) 22, 222, 387
AfiI CCNNNNNNNGG 3 cut(s) 243, 244, 440
AgsI TTSAA 2 cut(s) 197, 463
AluBI AGCT 3 cut(s) 74, 136, 344
AluI AGCT 3 cut(s) 74, 136, 344
Alw26I GTCTC 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 158, 319
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 425
AvaII GGWCC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 458
BccI CCATC 3 cut(s) 32, 103, 120
BceAI ACGGC 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 284
BisI GCNGC 2 cut(s) 230, 447
BlsI GCNGC 2 cut(s) 231, 448
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmsI GCATC 3 cut(s) 216, 403, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 244, 440
Bse1I ACTGG 1 cut(s) 445
Bse3DI GCAATG 1 cut(s) 416
BseLI CCNNNNNNNGG 3 cut(s) 243, 244, 440
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 249, 346
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 458
BsgI GTGCAG 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 3 cut(s) 243, 244, 440
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 326
Bsp1407I TGTACA 2 cut(s) 20, 220
Bsp143I GATC 1 cut(s) 56
BspACI CCGC 3 cut(s) 33, 229, 310
BspCNI CTCAG 2 cut(s) 250, 345
BspFNI CGCG 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 416
BsrGI TGTACA 2 cut(s) 20, 220
BsrI ACTGG 1 cut(s) 445
BssMI GATC 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 301
BstAUI TGTACA 2 cut(s) 20, 220
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 4 cut(s) 80, 137, 258, 332
BstFNI CGCG 1 cut(s) 33
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 284
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 458
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 1 cut(s) 438
Csp6I GTAC 3 cut(s) 21, 221, 386
CviAII CATG 3 cut(s) 68, 278, 395
CviJI RGCY 9 cut(s) 74, 94, 111, 136, 176, 256, 344, 399, 457
CviKI_1 RGCY 9 cut(s) 74, 94, 111, 136, 176, 256, 344, 399, 457
CviQI GTAC 3 cut(s) 21, 221, 386
DdeI CTNAG 4 cut(s) 80, 137, 258, 332
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 425
EcoRI GAATTC 2 cut(s) 158, 319
EcoT22I ATGCAT 1 cut(s) 418
FaeI CATG 3 cut(s) 71, 281, 398
FaqI GGGAC 1 cut(s) 326
FatI CATG 3 cut(s) 67, 277, 394
FauI CCCGC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 230, 447
Fsp4HI GCNGC 2 cut(s) 230, 447
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 230, 447
HgaI GACGC 1 cut(s) 438
Hin1II CATG 3 cut(s) 71, 281, 398
HinfI GANTC 2 cut(s) 328, 336
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 2 cut(s) 117, 335
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 36, 139
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 4 cut(s) 128, 416, 446, 481
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 4 cut(s) 80, 137, 258, 332
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 3 cut(s) 71, 281, 398
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 4 cut(s) 9, 72, 270, 426
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 3 cut(s) 216, 403, 468
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 1 cut(s) 209
MluCI AATT 2 cut(s) 158, 319
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 458
MnlI CCTC 4 cut(s) 162, 165, 242, 283
Mph1103I ATGCAT 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 2 cut(s) 399, 411
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 1 cut(s) 56
NlaIII CATG 3 cut(s) 71, 281, 398
NmuCI GTSAC 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 336
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 2 cut(s) 231, 448
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 425
RsaI GTAC 3 cut(s) 22, 222, 387
RsaNI GTAC 3 cut(s) 21, 221, 386
RseI CAYNNNNRTG 2 cut(s) 399, 411
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 230, 447
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 337
SetI ASST 6 cut(s) 47, 76, 138, 150, 219, 346
SfaNI GCATC 3 cut(s) 216, 403, 468
SfcI CTRYAG 1 cut(s) 284
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 2 cut(s) 399, 411
Sse9I AATT 2 cut(s) 158, 319
SsiI CCGC 3 cut(s) 33, 229, 310
SspMI CTAG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 55
TasI AATT 2 cut(s) 158, 319
TatI WGTACW 3 cut(s) 20, 220, 385
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 56, 151, 171
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 2 cut(s) 158, 319
XceI RCATGY 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.