Rorug04G0246600

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000651
Physical Location & Seq
Forward (+)
41709909 .. 41711258
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0246600.1

Sequence Viewer

Length: 1350 bp
ATGAAGCATTCAAAACCTCTGCGCAGTTACACACCTCTAGTGAACCAAGTCCTGACAGCCATGCTCAAAAACCAACCTTTTGATCCGAACCCCTCGGTTTCATCCACCACAACTCAACCATGGACCTCCGACTCAGTTTCCCAAGTCCTAACCTCCATCCCCAGATTCTTCTTCCAGTCCCCTCGCTCCATAGGTTGCCAAACCGGCTGTCGGCACCGCGCTTCGTTAAAGCAACGTAATCTCAGGCAAGAAACATATAATTTCCACAATGACATGCTCATTTTTGGCCCAGCTGCCCATAGAGACCTCAACAAGGTCAATCTGGGAGTGGATAAAACCCTCGATTTTTACTACTGGGTCGAAACCCATTTCGGGTTCAAGCACAATGAGCGAACATGCAGAGACATGGCTATCGTTTTGGCTAAAGGGAATCGGTTGAAGGCCCTCTGGGATTTTCTGAAAGACATGTCAATGAGAGGGAGTAGTGGAAGCCCTCTTGTAACGACACAGTCCATAACCTGTTTGATGAAATGCCTAGGAGAAGAGGGATTGGTTAATGAAGCATTGACGGCTTTCTATAGAATGAAGCAATTTCATTGCAAACCGGATGTGTATGCTTACAACACTATTATTTATGCGCTTTGCAGAGTTGAGAATTTCAAGAAGGCCCGGTTTTTGCTGGAGCAGATGGAGCTGCCGGGTTTTAGATGCCCGCCGGATACATTCACTTATACGATTTTGATAAGCTCTTATTGTAGATATGGGTTGGAGACTGGGTGCAGGAAGGCCACTAGGAGGAGGTTGTGGGAAGCAAACCACATGTTTCGGAATATGCTTTTTAGAGGGTTTGTTCCTGATGTTGTTACTTACAATGCTTTGATCAATGGTTGTTGCAAGACTTACAGGATAGAGAGGGCGTTGGAGTTGTTTGAGGATATGAAGAAGAGGGATTGTTCCCCCAACCGGGTTACTTATGATTCGTTTATTAGATACTATGCTGCTGTTAATGAGATTGACAAGGCTGTGGATATGTTAAGAAGGATGCAGAATATGAATCATGGATTGGCCACTTCAAGTTCGTATACTCCAATCATTCATGCCTTGTGTGAAGCAGGAAGGGTTACAGAGGCCTGGAGTTTTCTTGTTGAGTTGGTTGATGGAGGGTCAATACCTAGAGAATATACTTACAAATTAGTTTGCAATGCAATGAGTTCAGCTGGAGAGGTCAATTTACTTGATGATGACCTGCAAAAAAGAATAGAAGACAGTATGCAGAGGAGATATAAGCACATAATGAAGGTGAAGCCAATAATGACTCGCAAAGGGTATGATAGCATGGTGGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

449

Amino Acids

51.97

Weight (kDa)

9.22

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 171 - 216 5.6e-09 PPR repeat family
PPR_1 PF12854 199 - 231 6e-08 PPR repeat
PPR_2 PF13041 202 - 253 3.1e-12 PPR repeat family
PPR_1 PF12854 237 - 255 7.4e-06 PPR repeat
PPR_2 PF13041 266 - 299 1.9e-08 PPR repeat family
PPR_3 PF13812 274 - 332 2.2e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 281 - 314 2.9e-12 PPR repeat
PPR_2 PF13041 285 - 330 7.6e-18 PPR repeat family
PPR_long PF17177 287 - 399 2.2e-09 Pentacotripeptide-repeat region of PRORP
PPR PF01535 288 - 318 1.2e-09 PPR repeat
PPR_2 PF13041 358 - 403 8.4e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 1254
AccB1I GGYRCC 1 cut(s) 213
AccI GTMKAC 1 cut(s) 1082
AccII CGCG 1 cut(s) 219
AciI CCGC 2 cut(s) 217, 713
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 1065
AcsI RAATTY 1 cut(s) 655
AfiI CCNNNNNNNGG 6 cut(s) 210, 313, 372, 795, 963, 964
AflIII ACRYGT 2 cut(s) 465, 819
AgsI TTSAA 5 cut(s) 12, 379, 439, 661, 1074
AjnI CCWGG 1 cut(s) 1130
AjuI GAANNNNNNNTTGG 2 cut(s) 1046, 1078
AluBI AGCT 4 cut(s) 293, 694, 747, 1217
AluI AGCT 4 cut(s) 293, 694, 747, 1217
Alw26I GTCTC 3 cut(s) 297, 396, 764
AlwI GGATC 1 cut(s) 77
AoxI GGCC 6 cut(s) 286, 441, 666, 786, 1065, 1128
ApeKI GCWGC 3 cut(s) 293, 694, 998
ApoI RAATTY 1 cut(s) 655
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
AspA2I CCTAGG 1 cut(s) 535
AspLEI GCGC 3 cut(s) 24, 221, 640
AspS9I GGNCC 4 cut(s) 123, 287, 442, 667
AsuC2I CCSGG 3 cut(s) 670, 699, 965
AsuHPI GGTGA 1 cut(s) 1312
AvaII GGWCC 1 cut(s) 123
AvrII CCTAGG 1 cut(s) 535
BalI TGGCCA 1 cut(s) 1067
BanI GGYRCC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 1269
BbvI GCAGC 3 cut(s) 280, 681, 985
BccI CCATC 3 cut(s) 164, 682, 1151
BceAI ACGGC 1 cut(s) 585
BciT130I CCWGG 1 cut(s) 1132
BciVI GTATCC 1 cut(s) 712
BclI TGATCA 1 cut(s) 879
BcnI CCSGG 3 cut(s) 670, 699, 965
BcoDI GTCTC 3 cut(s) 297, 396, 764
BfaI CTAG 4 cut(s) 38, 536, 792, 1173
BfmI CTRYAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 1254
BfuI GTATCC 1 cut(s) 712
BglI GCCNNNNNGGC 1 cut(s) 204
BisI GCNGC 3 cut(s) 294, 695, 999
BlnI CCTAGG 1 cut(s) 535
BlsI GCNGC 3 cut(s) 295, 696, 1000
Bme1390I CCNGG 4 cut(s) 670, 699, 965, 1132
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 4 cut(s) 123, 287, 442, 667
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 4 cut(s) 670, 699, 965, 1132
BmrI ACTGGG 2 cut(s) 364, 783
BmsI GCATC 2 cut(s) 698, 1032
BmuI ACTGGG 2 cut(s) 364, 783
BpiI GAAGAC 1 cut(s) 1269
BpmI CTGGAG 3 cut(s) 701, 1153, 1239
BpuMI CCSGG 3 cut(s) 670, 699, 965
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 93, 119, 535
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 6 cut(s) 210, 313, 372, 795, 963, 964
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 3 cut(s) 175, 359, 778
Bse3DI GCAATG 3 cut(s) 595, 1207, 1212
BseBI CCWGG 1 cut(s) 1132
BseDI CCNNGG 3 cut(s) 93, 119, 535
BseGI GGATG 4 cut(s) 101, 156, 613, 1047
BseLI CCNNNNNNNGG 6 cut(s) 210, 313, 372, 795, 963, 964
BseMI GCAATG 3 cut(s) 595, 1207, 1212
BseMII CTCAG 2 cut(s) 147, 256
BseNI ACTGG 3 cut(s) 175, 359, 778
BseRI GAGGAG 2 cut(s) 811, 1291
BseXI GCAGC 3 cut(s) 280, 681, 985
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 799
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 6 cut(s) 288, 443, 668, 788, 1067, 1130
BshNI GGYRCC 1 cut(s) 213
BsiSI CCGG 6 cut(s) 204, 605, 670, 698, 716, 964
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 6 cut(s) 210, 313, 372, 795, 963, 964
BsmAI GTCTC 3 cut(s) 297, 396, 764
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 6 cut(s) 288, 443, 668, 788, 1067, 1130
Bso31I GGTCTC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 82, 879
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 2 cut(s) 217, 713
BspANI GGCC 6 cut(s) 288, 443, 668, 788, 1067, 1130
BspCNI CTCAG 2 cut(s) 146, 255
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 215
BspMI ACCTGC 1 cut(s) 1254
BspPI GGATC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 3 cut(s) 595, 1207, 1212
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 3 cut(s) 175, 359, 778
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 93, 119, 535
BssMI GATC 2 cut(s) 82, 879
BssNAI GTATAC 1 cut(s) 1083
BssT1I CCWWGG 2 cut(s) 119, 535
Bst1107I GTATAC 1 cut(s) 1083
Bst2UI CCWGG 1 cut(s) 1132
Bst4CI ACNGT 2 cut(s) 510, 1268
Bst6I CTCTTC 2 cut(s) 537, 938
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 2 cut(s) 133, 242
BstDSI CCRYGG 1 cut(s) 119
BstENI CCTNNNNNAGG 1 cut(s) 311
BstF5I GGATG 4 cut(s) 101, 156, 613, 1047
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 3 cut(s) 24, 221, 640
BstKTI GATC 2 cut(s) 85, 882
BstMAI GTCTC 3 cut(s) 297, 396, 764
BstMBI GATC 2 cut(s) 82, 879
BstMWI GCNNNNNNNGC 4 cut(s) 204, 388, 569, 691
BstNI CCWGG 1 cut(s) 1132
BstNSI RCATGY 4 cut(s) 277, 399, 469, 823
BstSCI CCNGG 4 cut(s) 668, 697, 963, 1130
BstSFI CTRYAG 1 cut(s) 577
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 280, 681, 985
BstV2I GAAGAC 1 cut(s) 1269
BstZ17I GTATAC 1 cut(s) 1083
BsuI GTATCC 1 cut(s) 712
BsuRI GGCC 6 cut(s) 288, 443, 668, 788, 1067, 1130
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 4 cut(s) 101, 156, 613, 1047
BveI ACCTGC 1 cut(s) 1254
Cac8I GCNNGC 1 cut(s) 713
CfoI GCGC 3 cut(s) 24, 221, 640
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 4 cut(s) 123, 287, 442, 667
DdeI CTNAG 2 cut(s) 133, 242
DpnI GATC 2 cut(s) 84, 881
DpnII GATC 2 cut(s) 82, 879
EaeI YGGCCR 1 cut(s) 1065
Eam1104I CTCTTC 2 cut(s) 537, 938
EarI CTCTTC 2 cut(s) 537, 938
Eco130I CCWWGG 2 cut(s) 119, 535
Eco147I AGGCCT 1 cut(s) 1130
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 1130
EcoT14I CCWWGG 2 cut(s) 119, 535
ErhI CCWWGG 2 cut(s) 119, 535
FaqI GGGAC 1 cut(s) 163
FauI CCCGC 1 cut(s) 720
FbaI TGATCA 1 cut(s) 879
FblI GTMKAC 1 cut(s) 1082
Fnu4HI GCNGC 3 cut(s) 294, 695, 999
FokI GGATG 4 cut(s) 88, 143, 620, 1054
Fsp4HI GCNGC 3 cut(s) 294, 695, 999
FspBI CTAG 4 cut(s) 38, 536, 792, 1173
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 3 cut(s) 23, 220, 639
GluI GCNGC 3 cut(s) 294, 695, 999
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 3 cut(s) 701, 1153, 1239
HaeIII GGCC 6 cut(s) 288, 443, 668, 788, 1067, 1130
HapII CCGG 6 cut(s) 204, 605, 670, 698, 716, 964
HhaI GCGC 3 cut(s) 24, 221, 640
Hin6I GCGC 3 cut(s) 22, 219, 638
HinP1I GCGC 3 cut(s) 22, 219, 638
HinfI GANTC 6 cut(s) 131, 165, 430, 977, 1054, 1315
HpaII CCGG 6 cut(s) 204, 605, 670, 698, 716, 964
HphI GGTGA 1 cut(s) 1312
Hpy166II GTNNAC 2 cut(s) 43, 1083
Hpy188I TCNGA 4 cut(s) 87, 130, 459, 828
Hpy188III TCNNGA 3 cut(s) 52, 661, 854
Hpy8I GTNNAC 2 cut(s) 43, 1083
HpyAV CCTTC 6 cut(s) 433, 658, 778, 1032, 1110, 1291
HpyCH4III ACNGT 2 cut(s) 510, 1268
HpyCH4IV ACGT 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 388, 569, 691
HpyF3I CTNAG 2 cut(s) 133, 242
HpySE526I ACGT 1 cut(s) 235
HspAI GCGC 3 cut(s) 22, 219, 638
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 2 cut(s) 82, 879
LmnI GCTCC 3 cut(s) 191, 682, 691
Lsp1109I GCAGC 3 cut(s) 280, 681, 985
LweI GCATC 2 cut(s) 698, 1032
MaeI CTAG 4 cut(s) 38, 536, 792, 1173
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 5 cut(s) 26, 499, 862, 967, 1120
MalI GATC 2 cut(s) 84, 881
MboI GATC 2 cut(s) 82, 879
MboII GAAGA 6 cut(s) 160, 163, 554, 952, 955, 1274
MlsI TGGCCA 1 cut(s) 1067
MluCI AATT 5 cut(s) 259, 590, 655, 1190, 1228
MluNI TGGCCA 1 cut(s) 1067
MlyI GAGTC 2 cut(s) 125, 1309
MmeI TCCRAC 3 cut(s) 153, 747, 900
Mox20I TGGCCA 1 cut(s) 1067
MscI TGGCCA 1 cut(s) 1067
MseI TTAA 4 cut(s) 227, 555, 1005, 1034
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 1067
MspA1I CMGCKG 2 cut(s) 293, 1217
MspI CCGG 6 cut(s) 204, 605, 670, 698, 716, 964
MspR9I CCNGG 4 cut(s) 670, 699, 965, 1132
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 1 cut(s) 1132
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 4 cut(s) 204, 388, 569, 691
NciI CCSGG 3 cut(s) 670, 699, 965
NcoI CCATGG 1 cut(s) 119
NdeII GATC 2 cut(s) 82, 879
NlaIV GGNNCC 1 cut(s) 215
NsbI TGCGCA 1 cut(s) 23
NspI RCATGY 4 cut(s) 277, 399, 469, 823
PceI AGGCCT 1 cut(s) 1130
PciI ACATGT 2 cut(s) 465, 819
PctI GAATGC 1 cut(s) 7
PfeI GAWTC 4 cut(s) 165, 430, 977, 1054
PflFI GACNNNGTC 1 cut(s) 508
PkrI GCNGC 3 cut(s) 295, 696, 1000
PleI GAGTC 2 cut(s) 125, 1309
PpsI GAGTC 2 cut(s) 125, 1309
PscI ACATGT 2 cut(s) 465, 819
Psp6I CCWGG 1 cut(s) 1130
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 1130
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 4 cut(s) 123, 287, 442, 667
PsyI GACNNNGTC 1 cut(s) 508
PvuII CAGCTG 2 cut(s) 293, 1217
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 4 cut(s) 227, 555, 1005, 1034
SatI GCNGC 3 cut(s) 294, 695, 999
Sau3AI GATC 2 cut(s) 82, 879
Sau96I GGNCC 4 cut(s) 123, 287, 442, 667
SchI GAGTC 2 cut(s) 125, 1309
ScrFI CCNGG 4 cut(s) 670, 699, 965, 1132
SfaNI GCATC 2 cut(s) 698, 1032
SfcI CTRYAG 1 cut(s) 577
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 5 cut(s) 259, 590, 655, 1190, 1228
SseBI AGGCCT 1 cut(s) 1130
SsiI CCGC 2 cut(s) 217, 713
SspMI CTAG 4 cut(s) 38, 536, 792, 1173
StuI AGGCCT 1 cut(s) 1130
StyD4I CCNGG 4 cut(s) 668, 697, 963, 1130
StyI CCWWGG 2 cut(s) 119, 535
TaaI ACNGT 2 cut(s) 510, 1268
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 342, 360
TasI AATT 5 cut(s) 259, 590, 655, 1190, 1228
TfiI GAWTC 4 cut(s) 165, 430, 977, 1054
Tru1I TTAA 4 cut(s) 227, 555, 1005, 1034
Tru9I TTAA 4 cut(s) 227, 555, 1005, 1034
TseI GCWGC 3 cut(s) 293, 694, 998
Tth111I GACNNNGTC 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 123
XagI CCTNNNNNAGG 1 cut(s) 311
XapI RAATTY 1 cut(s) 655
XceI RCATGY 4 cut(s) 277, 399, 469, 823
XmaJI CCTAGG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 1082
XspI CTAG 4 cut(s) 38, 536, 792, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.