Rorug03G0184900

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000651
Physical Location & Seq
Forward (+)
15965881 .. 15969262
3382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0184900.1

Sequence Viewer

Length: 960 bp
ATGAGAAGTATAGCTACTTGTTACAATGAACATGCTATCAAGGTATCAGATTCATATTGTTCAGGGCCTTCAAACAGAGCCTATGTGACCCCTAAGTTGATTCCTTCAATCCCAAATGAAGTTACATGCATATACAAAACCAAGCTCTTGAACCACCAGCAGCTTTTGATCACTCTAACTTGGTACAACAGAATTTCAGGCCAAGGACTCATTGTCAATGTGGACGAGTACAAAATGAATTCCTCCTCCTCCTCCTCATCTTGGGAATCAAAATCATTGTCGAGTTCGAATTCCCAGAGACTGCAGAAGGAAAAGGGTACCAGGACATTCCAATCCTGCAATTTAAAGATAGAAGTGTTTTGGGATTTCTCCACTGCTGATTATCACAATGGAGGACCAGAGCCAACAAATGGTTTTTATTTATTGGTTTTGGCAGACTCAGAACTTGGTCTGATCCTTGGGGACAAGATAGAAGAAGTGCTGGACCTGAAGAAGTACAAGACTATCATTTCACAGCAGAAATTCTCATTGGTCTCCAGGAGTGAGCATGTCTCTGGTAATGCAGTGTATTCAACCAAGGCTCAATTCTGTGACTCGGGAATAGCTCATGACATTCTGATCAAGTGTGACAGAGACGACGAAGGAGGCTCGAAAAGCCAGGTGCTAACGTTTTCAATTGACAAGAAGAAGATTTTTCAGGTGAAGAGGTTGAAGTGGAATTTCAGAGGGAACCAGGCAATTTTTTTAGATGGTTTGCTGGTGGATTTGTTGTGGGACATTCACGATTGGTTGTTCAACCCAAAATCTGGGCGTGCTGTGTTTATGTTCAGGACTAGGAGTGGATTGGATAGCAGGCTTTGGCTGGAAGAGAAGGTTCTTGAACACAAGGGACAGGACAGGCCGGAATTCTCCTTGTTGATCTGTGCCTGTTACCTTGGAAAGCTCCTGGTCTCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

319

Amino Acids

36.25

Weight (kDa)

8.76

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 38 - 310 2.7e-79 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 2 cut(s) 410, 806
AclI AACGTT 1 cut(s) 668
AclWI GGATC 1 cut(s) 448
AcsI RAATTY 6 cut(s) 192, 238, 289, 521, 718, 905
AcuI CTGAAG 1 cut(s) 509
AfaI GTAC 4 cut(s) 185, 230, 319, 497
AfiI CCNNNNNNNGG 3 cut(s) 261, 410, 806
AgsI TTSAA 8 cut(s) 72, 108, 151, 573, 675, 712, 796, 881
AhdI GACNNNNNGTC 1 cut(s) 212
AjnI CCWGG 5 cut(s) 320, 536, 657, 732, 945
AjuI GAANNNNNNNTTGG 4 cut(s) 512, 544, 569, 601
AluBI AGCT 5 cut(s) 14, 145, 163, 605, 943
AluI AGCT 5 cut(s) 14, 145, 163, 605, 943
Alw26I GTCTC 5 cut(s) 292, 538, 556, 627, 955
AlwI GGATC 1 cut(s) 448
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 595
AoxI GGCC 3 cut(s) 65, 199, 899
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 6 cut(s) 192, 238, 289, 521, 718, 905
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp718I GGTACC 1 cut(s) 317
AspS9I GGNCC 3 cut(s) 65, 395, 484
AsuHPI GGTGA 1 cut(s) 712
AsuII TTCGAA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 595
AvaII GGWCC 2 cut(s) 395, 484
BanI GGYRCC 1 cut(s) 317
BarI GAAGNNNNNNTAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 743
BciT130I CCWGG 5 cut(s) 322, 538, 659, 734, 947
BclI TGATCA 2 cut(s) 168, 618
BcoDI GTCTC 5 cut(s) 292, 538, 556, 627, 955
BfaI CTAG 1 cut(s) 834
BfmI CTRYAG 1 cut(s) 302
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 5 cut(s) 322, 538, 659, 734, 947
Bme18I GGWCC 2 cut(s) 395, 484
BmeRI GACNNNNNGTC 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 595
BmgT120I GGNCC 3 cut(s) 65, 395, 484
BmiI GGNNCC 2 cut(s) 319, 731
BmrFI CCNGG 5 cut(s) 322, 538, 659, 734, 947
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpmI CTGGAG 1 cut(s) 520
Bpu14I TTCGAA 1 cut(s) 287
BsaI GGTCTC 2 cut(s) 538, 955
BsaJI CCNNGG 4 cut(s) 202, 457, 576, 934
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 410, 806
BseBI CCWGG 5 cut(s) 322, 538, 659, 734, 947
BseDI CCNNGG 4 cut(s) 202, 457, 576, 934
BseLI CCNNNNNNNGG 3 cut(s) 261, 410, 806
BseMII CTCAG 1 cut(s) 453
BseRI GAGGAG 4 cut(s) 235, 238, 241, 244
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 3 cut(s) 67, 201, 901
BshNI GGYRCC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 595
BsiSI CCGG 1 cut(s) 902
BslFI GGGAC 3 cut(s) 476, 788, 903
BslI CCNNNNNNNGG 3 cut(s) 261, 410, 806
BsmAI GTCTC 5 cut(s) 292, 538, 556, 627, 955
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 3 cut(s) 476, 788, 903
BsnI GGCC 3 cut(s) 67, 201, 901
Bso31I GGTCTC 2 cut(s) 538, 955
BsoBI CYCGRG 1 cut(s) 595
Bsp119I TTCGAA 1 cut(s) 287
Bsp143I GATC 4 cut(s) 168, 453, 618, 918
BspANI GGCC 3 cut(s) 67, 201, 901
BspCNI CTCAG 1 cut(s) 452
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 2 cut(s) 319, 731
BspMAI CTGCAG 1 cut(s) 306
BspPI GGATC 1 cut(s) 448
BspT104I TTCGAA 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 317
BspTNI GGTCTC 2 cut(s) 538, 955
BssECI CCNNGG 4 cut(s) 202, 457, 576, 934
BssMI GATC 4 cut(s) 168, 453, 618, 918
BssT1I CCWWGG 4 cut(s) 202, 457, 576, 934
Bst2UI CCWGG 5 cut(s) 322, 538, 659, 734, 947
Bst6I CTCTTC 2 cut(s) 698, 861
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 813, 854
BstDEI CTNAG 2 cut(s) 93, 439
BstKTI GATC 4 cut(s) 171, 456, 621, 921
BstMAI GTCTC 5 cut(s) 292, 538, 556, 627, 955
BstMBI GATC 4 cut(s) 168, 453, 618, 918
BstMWI GCNNNNNNNGC 1 cut(s) 654
BstNI CCWGG 5 cut(s) 322, 538, 659, 734, 947
BstNSI RCATGY 3 cut(s) 35, 129, 551
BstSCI CCNGG 5 cut(s) 320, 536, 657, 732, 945
BstSFI CTRYAG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 172
BsuRI GGCC 3 cut(s) 67, 201, 901
BtsI GCAGTG 2 cut(s) 372, 570
BtsIMutI CAGTG 2 cut(s) 372, 570
Cac8I GCNNGC 2 cut(s) 813, 854
CaiI CAGNNNCTG 1 cut(s) 301
CciI TCATGA 1 cut(s) 607
Cfr13I GGNCC 3 cut(s) 65, 395, 484
Csp6I GTAC 4 cut(s) 184, 229, 318, 496
CviAII CATG 4 cut(s) 32, 126, 548, 608
CviQI GTAC 4 cut(s) 184, 229, 318, 496
DdeI CTNAG 2 cut(s) 93, 439
DpnI GATC 4 cut(s) 170, 455, 620, 920
DpnII GATC 4 cut(s) 168, 453, 618, 918
DraI TTTAAA 1 cut(s) 345
DriI GACNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 698, 861
Eam1105I GACNNNNNGTC 1 cut(s) 212
EarI CTCTTC 2 cut(s) 698, 861
Eco130I CCWWGG 4 cut(s) 202, 457, 576, 934
Eco31I GGTCTC 2 cut(s) 538, 955
Eco47I GGWCC 2 cut(s) 395, 484
Eco57I CTGAAG 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 595
EcoO109I RGGNCCY 1 cut(s) 65
EcoRI GAATTC 3 cut(s) 238, 289, 905
EcoRII CCWGG 5 cut(s) 320, 536, 657, 732, 945
EcoT14I CCWWGG 4 cut(s) 202, 457, 576, 934
EcoT22I ATGCAT 1 cut(s) 131
ErhI CCWWGG 4 cut(s) 202, 457, 576, 934
Esp3I CGTCTC 1 cut(s) 627
FaeI CATG 4 cut(s) 35, 129, 551, 611
FaqI GGGAC 3 cut(s) 476, 788, 903
FatI CATG 4 cut(s) 31, 125, 547, 607
FbaI TGATCA 2 cut(s) 168, 618
Fnu4HI GCNGC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 1 cut(s) 834
GluI GCNGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 520
HaeIII GGCC 3 cut(s) 67, 201, 901
HapII CCGG 1 cut(s) 902
Hin1II CATG 4 cut(s) 35, 129, 551, 611
HinfI GANTC 6 cut(s) 50, 100, 207, 266, 437, 593
HpaII CCGG 1 cut(s) 902
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 5 cut(s) 49, 442, 453, 618, 725
Hpy188III TCNNGA 6 cut(s) 148, 597, 608, 782, 829, 878
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 5 cut(s) 78, 114, 301, 635, 865
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 4 cut(s) 129, 304, 339, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 654
HpyF3I CTNAG 2 cut(s) 93, 439
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 4 cut(s) 35, 129, 551, 611
KpnI GGTACC 1 cut(s) 321
Ksp22I TGATCA 2 cut(s) 168, 618
Kzo9I GATC 4 cut(s) 168, 453, 618, 918
LmnI GCTCC 1 cut(s) 948
Lsp1109I GCAGC 1 cut(s) 172
MaeI CTAG 1 cut(s) 834
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 6 cut(s) 20, 85, 121, 590, 626, 929
MalI GATC 4 cut(s) 170, 455, 620, 920
MboI GATC 4 cut(s) 168, 453, 618, 918
MboII GAAGA 6 cut(s) 485, 502, 697, 700, 715, 878
MfeI CAATTG 1 cut(s) 675
MlyI GAGTC 3 cut(s) 201, 431, 587
MnlI CCTC 9 cut(s) 253, 256, 259, 262, 265, 386, 638, 699, 719
Mph1103I ATGCAT 1 cut(s) 131
MseI TTAA 1 cut(s) 344
MspI CCGG 1 cut(s) 902
MspR9I CCNGG 5 cut(s) 322, 538, 659, 734, 947
MunI CAATTG 1 cut(s) 675
MvaI CCWGG 5 cut(s) 322, 538, 659, 734, 947
MwoI GCNNNNNNNGC 1 cut(s) 654
NdeII GATC 4 cut(s) 168, 453, 618, 918
NlaIII CATG 4 cut(s) 35, 129, 551, 611
NlaIV GGNNCC 2 cut(s) 319, 731
NmuCI GTSAC 3 cut(s) 85, 590, 626
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 3 cut(s) 35, 129, 551
NspV TTCGAA 1 cut(s) 287
PagI TCATGA 1 cut(s) 607
PfeI GAWTC 3 cut(s) 50, 100, 266
PflMI CCANNNNNTGG 2 cut(s) 410, 806
PfoI TCCNGGA 1 cut(s) 536
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 3 cut(s) 201, 431, 587
PpsI GAGTC 3 cut(s) 201, 431, 587
Psp1406I AACGTT 1 cut(s) 668
Psp6I CCWGG 5 cut(s) 320, 536, 657, 732, 945
PspGI CCWGG 5 cut(s) 320, 536, 657, 732, 945
PspN4I GGNNCC 2 cut(s) 319, 731
PspPI GGNCC 3 cut(s) 65, 395, 484
PstI CTGCAG 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 301
RsaI GTAC 4 cut(s) 185, 230, 319, 497
RsaNI GTAC 4 cut(s) 184, 229, 318, 496
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 4 cut(s) 168, 453, 618, 918
Sau96I GGNCC 3 cut(s) 65, 395, 484
SchI GAGTC 3 cut(s) 201, 431, 587
ScrFI CCNGG 5 cut(s) 322, 538, 659, 734, 947
SfcI CTRYAG 1 cut(s) 302
SfuI TTCGAA 1 cut(s) 287
SinI GGWCC 2 cut(s) 395, 484
SspMI CTAG 1 cut(s) 834
StyD4I CCNGG 5 cut(s) 320, 536, 657, 732, 945
StyI CCWWGG 4 cut(s) 202, 457, 576, 934
TaiI ACGT 1 cut(s) 671
TaqI TCGA 3 cut(s) 281, 287, 650
TatI WGTACW 2 cut(s) 228, 495
TfiI GAWTC 3 cut(s) 50, 100, 266
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 379, 570
TseFI GTSAC 3 cut(s) 85, 590, 626
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 3 cut(s) 85, 590, 626
TspDTI ATGAA 4 cut(s) 42, 42, 132, 251
TspRI CASTG 2 cut(s) 379, 570
Van91I CCANNNNNTGG 2 cut(s) 410, 806
VpaK11BI GGWCC 2 cut(s) 395, 484
XapI RAATTY 6 cut(s) 192, 238, 289, 521, 718, 905
XceI RCATGY 3 cut(s) 35, 129, 551
XspI CTAG 1 cut(s) 834
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.