Rorug03G0184800

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000651
Physical Location & Seq
Forward (+)
15958544 .. 15960655
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0184800.1

Sequence Viewer

Length: 1491 bp
ATGGAGACTCATTTCATCAACTCAGTAACTCGTCTACGTGCAACTCAGCTCCTTCTCTGCACACTCGCTATATTACTCTTCTCACCCACCGCCACCACCCTATCAGAGCTTCCCAGAGGCTTCAAGGCCACTCCCGACTCCTCAACCCAAACCTTCCAACCTCTCCTCTCCGACTCCACTGGCAATTTCTCCCTCGGCTTTCTCCGAGTCAACAAAACCCAGCTGGCTCTCGCCGTCCTCCACGTTCCGTCATCTGAGCCCTTCTGGGTGGCAAACCCTGCCCAACTCGCTCGCTGGTCCGACCGTACCCACCTCACTTTCAACGGCAGTCTCGTCCTTTCCGATCCTCAGACAAGGACATATTGGTCAACTCACACTGATGCTGATCATGTTATCCTCCTCAACAATTCAAACTTGCTAATACAGAGTGCCAACCAGAACGAAGCTCCAGCATGGCAGAGTTTCGACTTTCCCACAAATACCCTCGTCGAAAACCAGAATTTCACATCTAAAATGGTTCTGATTTCCTCCAACGGACTGTACTCGATGCGATTAGGGCCCGACTTCATCGGCCTCTACGCGAATTTCAATGAAGGCTCGGACCAGATTTATCTCCGGCACAAAGCAATGGAAGCCAAAACCGATATAGTCGAGAATGAAGGCCCCATTTACGCGCAGATAAACCCGGATCGGTACCTCGGTATGTACCAAACGGGTAACCCGTTACCCGCCGACGTTCAAAAGTTCAACAGCTATCAGACACCCATCACCGGCTTCCTCCGGGTCCGGTTAGAACCCGACGGGAACTTAGTCGGGTACTTCTGGGACGGGTCGAAGTGGGTTTTGGACTACCGGGCGATTTCTCAAAGCTGCGAGCTTCCGAGTGCGTGCGGTTCGTACGGGTTGTGTACAGCCGGAAATGGCTGCTCGTGTTTGGATAACCGGACGGAGTTTGCCTCCGGCGAGTGTTTCGCGGCGCAGTCCGGTGACTTCTGCAGCGACGGAATCCCGAGAAATAATTTCTGGGTTTTGAGGAGGAACGGGGTTGAGCCGCCGTACAAGGAGTTGATGGGGTACCAAACGACGTCGTCGCTGGACCAGTGCGAGAGGCTTTGTGAAAGGAACTGTAGCTGTTGGGGCGCGGTTTTTAATAACGCATCCGGGTTTTGTTACATGATGGACTACCCGATCCAAACCCTAGTGGGTGTGGGGGATGAGACCAAGATAGGGTATTTTAAGGTGCGGGAGGGTGCAGGGAGGAAGAAAATGACTGTGGGTGTTGGTGTTGGGGTTGGGATTGGTGTGATGTGTGGGGTGGTTTTGATTTTGGTGGGGATTGTTGGGGTTTGGAGGTTTAGGGTTTGGAAGAGGAAGAGGGGAGGAGGAGCAGTAAAGAGCCGGTTCATGGAGCAAAACGGCGGCGTTTCGCCCGGCCCGTATAAGGATCTTGGATCGGCAAGCTTTAGGTCAATTGAGATGGGGAGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

496

Amino Acids

54.75

Weight (kDa)

6.97

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 88 - 174 3.2e-12 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 364
AatII GACGTC 1 cut(s) 1088
Acc65I GGTACC 2 cut(s) 693, 1074
AccB1I GGYRCC 2 cut(s) 693, 1074
AccI GTMKAC 1 cut(s) 34
AccII CGCG 4 cut(s) 581, 674, 974, 1142
AciI CCGC 8 cut(s) 90, 729, 891, 974, 1052, 1142, 1243, 1419
AclWI GGATC 5 cut(s) 338, 696, 1183, 1452, 1459
AcsI RAATTY 2 cut(s) 499, 583
AcyI GRCGYC 1 cut(s) 1085
AfiI CCNNNNNNNGG 4 cut(s) 770, 1227, 1405, 1441
AgsI TTSAA 6 cut(s) 124, 322, 411, 589, 740, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
AluBI AGCT 9 cut(s) 49, 109, 223, 446, 753, 870, 877, 1131, 1461
AluI AGCT 9 cut(s) 49, 109, 223, 446, 753, 870, 877, 1131, 1461
Alw26I GTCTC 2 cut(s) 335, 1211
AlwI GGATC 5 cut(s) 338, 696, 1183, 1452, 1459
Ama87I CYCGRG 1 cut(s) 1009
AoxI GGCC 5 cut(s) 126, 557, 571, 661, 1432
ApaI GGGCCC 1 cut(s) 561
ApeKI GCWGC 3 cut(s) 870, 924, 996
ApoI RAATTY 2 cut(s) 499, 583
Asp718I GGTACC 2 cut(s) 693, 1074
AspLEI GCGC 3 cut(s) 676, 979, 1142
AspS9I GGNCC 8 cut(s) 297, 557, 558, 601, 662, 784, 1096, 1433
AsuC2I CCSGG 5 cut(s) 686, 782, 854, 1162, 1431
AsuHPI GGTGA 3 cut(s) 75, 760, 998
AvaI CYCGRG 1 cut(s) 1009
AvaII GGWCC 4 cut(s) 297, 601, 784, 1096
BaeGI GKGCMC 1 cut(s) 561
BaeI ACNNNNGTAYC 2 cut(s) 685, 718
BanI GGYRCC 2 cut(s) 693, 1074
BanII GRGCYC 2 cut(s) 261, 561
BauI CACGAG 1 cut(s) 928
BbvI GCAGC 3 cut(s) 857, 911, 1008
BccI CCATC 4 cut(s) 773, 1063, 1171, 1471
BceAI ACGGC 4 cut(s) 218, 340, 1039, 1432
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 5 cut(s) 686, 782, 854, 1162, 1431
BcoDI GTCTC 2 cut(s) 335, 1211
BfaI CTAG 1 cut(s) 1199
BfmI CTRYAG 2 cut(s) 994, 1126
BisI GCNGC 6 cut(s) 871, 925, 975, 997, 1052, 1420
BlsI GCNGC 6 cut(s) 872, 926, 976, 998, 1053, 1421
Bme1390I CCNGG 5 cut(s) 686, 782, 854, 1162, 1431
Bme18I GGWCC 4 cut(s) 297, 601, 784, 1096
BmeT110I CYCGRG 1 cut(s) 1009
BmgT120I GGNCC 8 cut(s) 297, 557, 558, 601, 662, 784, 1096, 1433
BmiI GGNNCC 5 cut(s) 559, 664, 695, 785, 1076
BmrFI CCNGG 5 cut(s) 686, 782, 854, 1162, 1431
BmsI GCATC 3 cut(s) 370, 537, 1166
BplI GAGNNNNNCTC 2 cut(s) 941, 973
BpmI CTGGAG 1 cut(s) 432
BpuMI CCSGG 5 cut(s) 686, 782, 854, 1162, 1431
BsaAI YACGTR 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 1085
BsaI GGTCTC 1 cut(s) 1211
BsaJI CCNNGG 2 cut(s) 193, 697
BsaWI WCCGGW 3 cut(s) 786, 942, 983
BsaXI ACNNNNNCTCC 2 cut(s) 1374, 1404
Bsc4I CCNNNNNNNGG 4 cut(s) 770, 1227, 1405, 1441
Bse118I RCCGGY 2 cut(s) 770, 1398
Bse1I ACTGG 2 cut(s) 184, 1099
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 193, 697
BseGI GGATG 2 cut(s) 1157, 1219
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 4 cut(s) 770, 1227, 1405, 1441
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 4 cut(s) 36, 59, 246, 362
BseNI ACTGG 2 cut(s) 184, 1099
BseRI GAGGAG 6 cut(s) 130, 155, 389, 1048, 1395, 1398
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 3 cut(s) 857, 911, 1008
BseYI CCCAGC 1 cut(s) 219
BsgI GTGCAG 2 cut(s) 43, 1272
Bsh1236I CGCG 4 cut(s) 581, 674, 974, 1142
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 5 cut(s) 128, 559, 573, 663, 1434
BshNI GGYRCC 2 cut(s) 693, 1074
BsiEI CGRYCG 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 1009
BsiWI CGTACG 1 cut(s) 897
BslFI GGGAC 1 cut(s) 839
BslI CCNNNNNNNGG 4 cut(s) 770, 1227, 1405, 1441
BsmAI GTCTC 2 cut(s) 335, 1211
BsmFI GGGAC 1 cut(s) 839
BsnI GGCC 5 cut(s) 128, 559, 573, 663, 1434
Bso31I GGTCTC 1 cut(s) 1211
BsoBI CYCGRG 1 cut(s) 1009
Bsp120I GGGCCC 1 cut(s) 557
Bsp1286I GDGCHC 2 cut(s) 261, 561
Bsp1407I TGTACA 1 cut(s) 908
Bsp143I GATC 6 cut(s) 343, 385, 688, 1188, 1444, 1451
BspACI CCGC 8 cut(s) 90, 729, 891, 974, 1052, 1142, 1243, 1419
BspANI GGCC 5 cut(s) 128, 559, 573, 663, 1434
BspCNI CTCAG 4 cut(s) 35, 58, 247, 361
BspFNI CGCG 4 cut(s) 581, 674, 974, 1142
BspLI GGNNCC 5 cut(s) 559, 664, 695, 785, 1076
BspMAI CTGCAG 1 cut(s) 998
BspPI GGATC 5 cut(s) 338, 696, 1183, 1452, 1459
BspT107I GGYRCC 2 cut(s) 693, 1074
BspTNI GGTCTC 1 cut(s) 1211
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 2 cut(s) 770, 1398
BsrGI TGTACA 1 cut(s) 908
BsrI ACTGG 2 cut(s) 184, 1099
BssAI RCCGGY 2 cut(s) 770, 1398
BssECI CCNNGG 2 cut(s) 193, 697
BssMI GATC 6 cut(s) 343, 385, 688, 1188, 1444, 1451
BssNI GRCGYC 1 cut(s) 1085
BssSI CACGAG 1 cut(s) 928
Bst2BI CACGAG 1 cut(s) 928
Bst4CI ACNGT 4 cut(s) 305, 540, 1127, 1273
Bst6I CTCTTC 3 cut(s) 83, 1361, 1367
BstACI GRCGYC 1 cut(s) 1085
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 908
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 5 cut(s) 225, 292, 875, 889, 1459
BstDEI CTNAG 5 cut(s) 22, 45, 255, 348, 808
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 2 cut(s) 1157, 1219
BstFNI CGCG 4 cut(s) 581, 674, 974, 1142
BstHHI GCGC 3 cut(s) 676, 979, 1142
BstKTI GATC 6 cut(s) 346, 388, 691, 1191, 1447, 1454
BstMAI GTCTC 2 cut(s) 335, 1211
BstMBI GATC 6 cut(s) 343, 385, 688, 1188, 1444, 1451
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 5 cut(s) 278, 287, 556, 632, 1137
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 5 cut(s) 684, 780, 852, 1160, 1429
BstSFI CTRYAG 2 cut(s) 994, 1126
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 4 cut(s) 581, 674, 974, 1142
BstV1I GCAGC 3 cut(s) 857, 911, 1008
BstX2I RGATCY 1 cut(s) 1444
BstYI RGATCY 1 cut(s) 1444
BsuRI GGCC 5 cut(s) 128, 559, 573, 663, 1434
BtsCI GGATG 2 cut(s) 1157, 1219
BtsIMutI CAGTG 3 cut(s) 177, 375, 1106
Cac8I GCNNGC 5 cut(s) 225, 292, 875, 889, 1459
CfoI GCGC 3 cut(s) 676, 979, 1142
Cfr10I RCCGGY 2 cut(s) 770, 1398
Cfr13I GGNCC 8 cut(s) 297, 557, 558, 601, 662, 784, 1096, 1433
CviAII CATG 4 cut(s) 389, 453, 1174, 1405
DdeI CTNAG 5 cut(s) 22, 45, 255, 348, 808
DpnI GATC 6 cut(s) 345, 387, 690, 1190, 1446, 1453
DpnII GATC 6 cut(s) 343, 385, 688, 1188, 1444, 1451
DrdI GACNNNNNNGTC 1 cut(s) 364
DseDI GACNNNNNNGTC 1 cut(s) 364
Eam1104I CTCTTC 3 cut(s) 83, 1361, 1367
EarI CTCTTC 3 cut(s) 83, 1361, 1367
Eco24I GRGCYC 2 cut(s) 261, 561
Eco31I GGTCTC 1 cut(s) 1211
Eco47I GGWCC 4 cut(s) 297, 601, 784, 1096
Eco88I CYCGRG 1 cut(s) 1009
Eco91I GGTNACC 1 cut(s) 716
EcoO109I RGGNCCY 2 cut(s) 557, 662
EcoO65I GGTNACC 1 cut(s) 716
EcoT38I GRGCYC 2 cut(s) 261, 561
FaeI CATG 4 cut(s) 392, 456, 1177, 1408
FaqI GGGAC 1 cut(s) 839
FatI CATG 4 cut(s) 388, 452, 1173, 1404
FauI CCCGC 2 cut(s) 736, 1236
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 6 cut(s) 871, 925, 975, 997, 1052, 1420
FokI GGATG 2 cut(s) 1144, 1226
FriOI GRGCYC 2 cut(s) 261, 561
Fsp4HI GCNGC 6 cut(s) 871, 925, 975, 997, 1052, 1420
FspBI CTAG 1 cut(s) 1199
GlaI GCGC 3 cut(s) 675, 978, 1141
GluI GCNGC 6 cut(s) 871, 925, 975, 997, 1052, 1420
GsaI CCCAGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 5 cut(s) 128, 559, 573, 663, 1434
HhaI GCGC 3 cut(s) 676, 979, 1142
Hin1I GRCGYC 1 cut(s) 1085
Hin1II CATG 4 cut(s) 392, 456, 1177, 1408
Hin6I GCGC 3 cut(s) 674, 977, 1140
HinP1I GCGC 3 cut(s) 674, 977, 1140
HincII GTYRAC 2 cut(s) 211, 369
HindII GTYRAC 2 cut(s) 211, 369
HindIII AAGCTT 1 cut(s) 1459
HinfI GANTC 5 cut(s) 7, 137, 173, 207, 1005
HphI GGTGA 3 cut(s) 75, 760, 998
Hpy166II GTNNAC 4 cut(s) 35, 211, 369, 909
Hpy188III TCNNGA 3 cut(s) 134, 652, 1009
Hpy8I GTNNAC 4 cut(s) 35, 211, 369, 909
Hpy99I CGWCG 7 cut(s) 491, 737, 803, 1004, 1087, 1090, 1093
HpyAV CCTTC 5 cut(s) 62, 163, 271, 587, 653
HpyCH4III ACNGT 4 cut(s) 305, 540, 1127, 1273
HpyCH4IV ACGT 4 cut(s) 37, 243, 735, 1085
HpyCH4V TGCA 4 cut(s) 41, 60, 996, 1253
HpyF10VI GCNNNNNNNGC 5 cut(s) 278, 287, 556, 632, 1137
HpyF3I CTNAG 5 cut(s) 22, 45, 255, 348, 808
HpySE526I ACGT 4 cut(s) 37, 243, 735, 1085
Hsp92I GRCGYC 1 cut(s) 1085
Hsp92II CATG 4 cut(s) 392, 456, 1177, 1408
HspAI GCGC 3 cut(s) 674, 977, 1140
KpnI GGTACC 2 cut(s) 697, 1078
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 6 cut(s) 343, 385, 688, 1188, 1444, 1451
LmnI GCTCC 4 cut(s) 54, 451, 1385, 1408
Lsp1109I GCAGC 3 cut(s) 857, 911, 1008
LweI GCATC 3 cut(s) 370, 537, 1166
MaeI CTAG 1 cut(s) 1199
MaeII ACGT 4 cut(s) 37, 243, 735, 1085
MaeIII GTNAC 5 cut(s) 25, 716, 723, 986, 1169
MalI GATC 6 cut(s) 345, 387, 690, 1190, 1446, 1453
MboI GATC 6 cut(s) 343, 385, 688, 1188, 1444, 1451
MboII GAAGA 4 cut(s) 70, 1273, 1378, 1384
MfeI CAATTG 1 cut(s) 1470
MflI RGATCY 1 cut(s) 1444
MhlI GDGCHC 2 cut(s) 261, 561
MluCI AATT 6 cut(s) 184, 406, 499, 583, 1018, 1470
MlyI GAGTC 3 cut(s) 131, 167, 216
MmeI TCCRAC 4 cut(s) 181, 195, 324, 555
MseI TTAA 2 cut(s) 1149, 1236
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 223
MspR9I CCNGG 5 cut(s) 686, 782, 854, 1162, 1431
MunI CAATTG 1 cut(s) 1470
MvnI CGCG 4 cut(s) 581, 674, 974, 1142
MwoI GCNNNNNNNGC 5 cut(s) 278, 287, 556, 632, 1137
NciI CCSGG 5 cut(s) 686, 782, 854, 1162, 1431
NdeII GATC 6 cut(s) 343, 385, 688, 1188, 1444, 1451
NlaIII CATG 4 cut(s) 392, 456, 1177, 1408
NlaIV GGNNCC 5 cut(s) 559, 664, 695, 785, 1076
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 986
PcsI WCGNNNNNNNCGW 4 cut(s) 330, 339, 719, 1433
PfeI GAWTC 1 cut(s) 1005
Pfl23II CGTACG 1 cut(s) 897
PflFI GACNNNGTC 1 cut(s) 1087
PkrI GCNGC 6 cut(s) 872, 926, 976, 998, 1053, 1421
PleI GAGTC 3 cut(s) 131, 167, 215
PpsI GAGTC 3 cut(s) 131, 167, 215
Ppu21I YACGTR 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 716
PspFI CCCAGC 1 cut(s) 219
PspLI CGTACG 1 cut(s) 897
PspN4I GGNNCC 5 cut(s) 559, 664, 695, 785, 1076
PspOMI GGGCCC 1 cut(s) 557
PspPI GGNCC 8 cut(s) 297, 557, 558, 601, 662, 784, 1096, 1433
PstI CTGCAG 1 cut(s) 998
PsuI RGATCY 1 cut(s) 1444
PsyI GACNNNGTC 1 cut(s) 1087
PvuII CAGCTG 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 2 cut(s) 1149, 1236
SatI GCNGC 6 cut(s) 871, 925, 975, 997, 1052, 1420
Sau3AI GATC 6 cut(s) 343, 385, 688, 1188, 1444, 1451
Sau96I GGNCC 8 cut(s) 297, 557, 558, 601, 662, 784, 1096, 1433
SchI GAGTC 3 cut(s) 131, 167, 216
ScrFI CCNGG 5 cut(s) 686, 782, 854, 1162, 1431
SduI GDGCHC 2 cut(s) 261, 561
SfaNI GCATC 3 cut(s) 370, 537, 1166
SfcI CTRYAG 2 cut(s) 994, 1126
SinI GGWCC 4 cut(s) 297, 601, 784, 1096
SmiMI CAYNNNNRTG 1 cut(s) 378
Sse9I AATT 6 cut(s) 184, 406, 499, 583, 1018, 1470
SsiI CCGC 8 cut(s) 90, 729, 891, 974, 1052, 1142, 1243, 1419
SspMI CTAG 1 cut(s) 1199
StyD4I CCNGG 5 cut(s) 684, 780, 852, 1160, 1429
TaaI ACNGT 4 cut(s) 305, 540, 1127, 1273
TaiI ACGT 4 cut(s) 40, 246, 738, 1088
TaqI TCGA 5 cut(s) 465, 489, 545, 651, 833
TasI AATT 6 cut(s) 184, 406, 499, 583, 1018, 1470
TatI WGTACW 3 cut(s) 540, 908, 1484
TauI GCSGC 3 cut(s) 977, 1054, 1422
TfiI GAWTC 1 cut(s) 1005
Tru1I TTAA 2 cut(s) 1149, 1236
Tru9I TTAA 2 cut(s) 1149, 1236
TscAI CASTG 3 cut(s) 184, 382, 1106
TseFI GTSAC 1 cut(s) 986
TseI GCWGC 3 cut(s) 870, 924, 996
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 5 cut(s) 4, 556, 606, 672, 1393
TspGWI ACGGA 4 cut(s) 237, 549, 962, 1017
TspRI CASTG 3 cut(s) 184, 382, 1106
Tth111I GACNNNGTC 1 cut(s) 1087
VpaK11BI GGWCC 4 cut(s) 297, 601, 784, 1096
XapI RAATTY 2 cut(s) 499, 583
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 1 cut(s) 1199
ZraI GACGTC 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.