Rorug04G0246300

OTU domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
41672844 .. 41673251
408 bp
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UTR
Exon/CDS
Intron
Rorug04G0246300.1

Sequence Viewer

Length: 408 bp
ATGCTCATTCTTGGCCCAGTTGCCCACAAAGACCTCAACAAGGTCAATCTGGGAGTGAACAAAGCCCTCTATTTTTACTACTGGGTCGAAACCCATTTTGAGTTCAACCACAATGAGCGAACTTGTAGAGACATGGCTATCGTTTTGGCTAAATTGAATCGGTTGAAGGCCCTCTGGGATTTGAAAGACATGCCAAAGAGAGTGAGTAGTGAAAGCCCTATTGTAATAACACAGTCCATCACCTGTTTGATGAAATGCATAGGAGAAGAGGGATTGGTTAATGAAGCATTGGCGGCTTTCTATAGAATGATGCAGTTTCATTGGAAATCGGATGTGTATGCTTACAACACTACTATTTACGCGCTTTGCAGAGTTGGGAATTTCAAGAAGGCCCGATTTTTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.76

Weight (kDa)

9.21

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 362
AciI CCGC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 5 cut(s) 106, 157, 166, 184, 385
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 3 cut(s) 13, 168, 390
ApoI RAATTY 1 cut(s) 379
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 3 cut(s) 14, 169, 391
AsuHPI GGTGA 1 cut(s) 232
BccI CCATC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 123
BfmI CTRYAG 2 cut(s) 301, 404
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmgT120I GGNCC 3 cut(s) 14, 169, 391
BmrI ACTGGG 2 cut(s) 11, 91
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 2 cut(s) 11, 91
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 17, 86
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 40
BseNI ACTGG 2 cut(s) 17, 86
Bsh1236I CGCG 1 cut(s) 362
BshFI GGCC 3 cut(s) 15, 170, 392
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 3 cut(s) 15, 170, 392
BspACI CCGC 1 cut(s) 293
BspANI GGCC 3 cut(s) 15, 170, 392
BspFNI CGCG 1 cut(s) 362
BsrI ACTGG 2 cut(s) 17, 86
Bst4CI ACNGT 2 cut(s) 234, 405
Bst6I CTCTTC 1 cut(s) 261
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 362
BstHHI GCGC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 193
BstSFI CTRYAG 2 cut(s) 301, 404
BstUI CGCG 1 cut(s) 362
BsuRI GGCC 3 cut(s) 15, 170, 392
BtsCI GGATG 1 cut(s) 337
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 14, 169, 391
CviAII CATG 2 cut(s) 133, 190
CviJI RGCY 8 cut(s) 15, 65, 137, 149, 170, 216, 296, 392
CviKI_1 RGCY 8 cut(s) 15, 65, 137, 149, 170, 216, 296, 392
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 260
FaeI CATG 2 cut(s) 136, 193
FaiI YATR 5 cut(s) 134, 191, 260, 303, 339
FatI CATG 2 cut(s) 132, 189
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 294
GlaI GCGC 1 cut(s) 363
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 3 cut(s) 15, 170, 392
HhaI GCGC 1 cut(s) 364
Hin1II CATG 2 cut(s) 136, 193
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HinfI GANTC 1 cut(s) 157
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 160, 382
HpyCH4III ACNGT 2 cut(s) 234, 405
HpyCH4V TGCA 3 cut(s) 258, 313, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
Hsp92II CATG 2 cut(s) 136, 193
HspAI GCGC 1 cut(s) 362
LpnPI CCDG 5 cut(s) 30, 35, 67, 160, 256
LweI GCATC 1 cut(s) 300
MboII GAAGA 1 cut(s) 278
MluCI AATT 2 cut(s) 152, 379
MnlI CCTC 4 cut(s) 44, 77, 182, 262
Mph1103I ATGCAT 1 cut(s) 260
MseI TTAA 1 cut(s) 279
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 293
NlaIII CATG 2 cut(s) 136, 193
NsiI ATGCAT 1 cut(s) 260
NspI RCATGY 1 cut(s) 193
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 295
PspPI GGNCC 3 cut(s) 14, 169, 391
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 294
Sau96I GGNCC 3 cut(s) 14, 169, 391
SetI ASST 3 cut(s) 36, 45, 245
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 2 cut(s) 301, 404
Sse9I AATT 2 cut(s) 152, 379
SsiI CCGC 1 cut(s) 293
TaaI ACNGT 2 cut(s) 234, 405
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 152, 379
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TspDTI ATGAA 3 cut(s) 266, 297, 308
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.