Rmu_sc0002620.1_g000002

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002620.1
OG0000651
Physical Location & Seq
Reverse (-)
2583 .. 4672
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002620.1_g000002.1.cds

Sequence Viewer

Length: 453 bp
atggataatcaccaaggcatacgcggagatggaaggtgtttgtttcgttctgtggttcatggagcttgtctaagagcagggaagccatctccaagtgacagccatcagaaagaacttgcagatgagcttagagagaaggtagcagatgaattcattaagaggagggctgacactgaatggtttcttgaagatgattttgagagatacgttgtacagatgcggcaaccccacatttggggaggcgagcctgagttgcttatgtcctcgcatgtcctgcagataccgattacagtttatatgagggacaagaattctaggagtctcagaatcatagctgaatatggcaaagagtatggtaaggataaccctatccgtgtactttatcatggctatggacactacgatgcattgcgtggtgcaagtccaactactggtacagcgtccaagctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

150

Amino Acids

17.19

Weight (kDa)

7.06

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 431
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 24, 220
AcsI RAATTY 2 cut(s) 149, 310
AfaI GTAC 3 cut(s) 213, 378, 436
AfiI CCNNNNNNNGG 3 cut(s) 234, 235, 431
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 4 cut(s) 65, 127, 335, 448
AluI AGCT 4 cut(s) 65, 127, 335, 448
Alw26I GTCTC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 149, 310
Asp700I GAANNNNTTC 1 cut(s) 180
BccI CCATC 3 cut(s) 23, 94, 111
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
BmsI GCATC 2 cut(s) 207, 394
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 235, 431
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 3 cut(s) 234, 235, 431
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 2 cut(s) 240, 337
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 3 cut(s) 234, 235, 431
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 317
Bsp1407I TGTACA 1 cut(s) 211
BspACI CCGC 2 cut(s) 24, 220
BspCNI CTCAG 2 cut(s) 241, 336
BspFNI CGCG 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 274
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 4 cut(s) 71, 128, 249, 323
BstFNI CGCG 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 326
BstMWI GCNNNNNNNGC 2 cut(s) 253, 274
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 275
BstUI CGCG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 245
CseI GACGC 1 cut(s) 429
Csp6I GTAC 3 cut(s) 212, 377, 435
CviAII CATG 3 cut(s) 59, 269, 386
CviJI RGCY 9 cut(s) 65, 85, 102, 127, 167, 247, 335, 390, 448
CviKI_1 RGCY 9 cut(s) 65, 85, 102, 127, 167, 247, 335, 390, 448
CviQI GTAC 3 cut(s) 212, 377, 435
DdeI CTNAG 4 cut(s) 71, 128, 249, 323
Eco130I CCWWGG 1 cut(s) 13
EcoRI GAATTC 2 cut(s) 149, 310
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 3 cut(s) 62, 272, 389
FaqI GGGAC 1 cut(s) 317
FatI CATG 3 cut(s) 58, 268, 385
Fnu4HI GCNGC 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 221
HgaI GACGC 1 cut(s) 429
Hin1II CATG 3 cut(s) 62, 272, 389
HinfI GANTC 2 cut(s) 319, 327
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 108, 326
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 27, 130
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 4 cut(s) 119, 277, 407, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 274
HpyF3I CTNAG 4 cut(s) 71, 128, 249, 323
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 62, 272, 389
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 4 cut(s) 63, 261, 287, 417
LweI GCATC 2 cut(s) 207, 394
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 1 cut(s) 200
MluCI AATT 2 cut(s) 149, 310
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 5 cut(s) 153, 156, 233, 274, 294
Mph1103I ATGCAT 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 2 cut(s) 390, 402
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 253, 274
NlaIII CATG 3 cut(s) 62, 272, 389
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PstI CTGCAG 1 cut(s) 279
RsaI GTAC 3 cut(s) 213, 378, 436
RsaNI GTAC 3 cut(s) 212, 377, 435
RseI CAYNNNNRTG 2 cut(s) 390, 402
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 221
SchI GAGTC 1 cut(s) 328
SetI ASST 7 cut(s) 38, 67, 129, 141, 210, 337, 450
SfaNI GCATC 2 cut(s) 207, 394
SfcI CTRYAG 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 390, 402
Sse9I AATT 2 cut(s) 149, 310
SsiI CCGC 2 cut(s) 24, 220
SspMI CTAG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 210
TasI AATT 2 cut(s) 149, 310
TatI WGTACW 2 cut(s) 211, 376
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 47, 142, 162
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 431
XapI RAATTY 2 cut(s) 149, 310
XceI RCATGY 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.