Rorug04G0246500

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000651
Physical Location & Seq
Forward (+)
41708826 .. 41709868
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0246500.1

Sequence Viewer

Length: 189 bp
ATGGCAGCTTCGTCACATAATGTTGAGTTGGAAGCAGCCAAGTTTCTGCACAAGCTCATTCAGGATTCTACCCATGAGCCCGCCAAACTTGCCACCAAGCTCTATGTGATACTGCAACACACGAAGTCGAGTGGCAACGAACATTCCATGCCGTATCAAGTCATATCAAGGAATTATGCCATGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

62

Amino Acids

6.95

Weight (kDa)

8.13

Isoelectric Point (pI)

60.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AluBI AGCT 3 cut(s) 8, 55, 100
AluI AGCT 3 cut(s) 8, 55, 100
ApeKI GCWGC 2 cut(s) 5, 35
BanII GRGCYC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 17, 47
BceAI ACGGC 1 cut(s) 136
BisI GCNGC 2 cut(s) 6, 36
BlsI GCNGC 2 cut(s) 7, 37
BseXI GCAGC 2 cut(s) 17, 47
BsgI GTGCAG 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 81
BspACI CCGC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 17, 47
Cac8I GCNNGC 1 cut(s) 81
CviAII CATG 3 cut(s) 74, 148, 181
CviJI RGCY 5 cut(s) 8, 38, 55, 79, 100
CviKI_1 RGCY 5 cut(s) 8, 38, 55, 79, 100
Eco24I GRGCYC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 3 cut(s) 77, 151, 184
FaiI YATR 7 cut(s) 18, 75, 105, 149, 164, 177, 182
FatI CATG 3 cut(s) 73, 147, 180
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 6, 36
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 6, 36
GluI GCNGC 2 cut(s) 6, 36
Hin1II CATG 3 cut(s) 77, 151, 184
HinfI GANTC 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 49, 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
Hsp92II CATG 3 cut(s) 77, 151, 184
LpnPI CCDG 1 cut(s) 47
Lsp1109I GCAGC 2 cut(s) 17, 47
MaeIII GTNAC 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 9
MseI TTAA 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 89
NlaIII CATG 3 cut(s) 77, 151, 184
NmuCI GTSAC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 7, 37
SaqAI TTAA 1 cut(s) 187
SatI GCNGC 2 cut(s) 6, 36
SduI GDGCHC 1 cut(s) 81
SetI ASST 3 cut(s) 10, 57, 102
Sse9I AATT 1 cut(s) 172
SsiI CCGC 1 cut(s) 81
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 172
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 187
Tru9I TTAA 1 cut(s) 187
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 2 cut(s) 5, 35
Tsp45I GTSAC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.