Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000651

Physical Location & Seq

Genomic Coordinates Forward (+)

53970330 .. 53973123

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACTTTATGGTTATTTTGTACAGGCATACGCGGAGATGGAAGGTGTTTGTTTCGTTCTGTGGTTCATGGGGCTTGTCTAAGAGCAGGGAAGCCATCTCCAAATGACAGCCATCAGAAAGAACTTGCTGATGAGCTTAGAGAGAAGGTAGCAGATGAATTCATTAAGAGAAGGGCTGACACTGAATGGTTTCTTGAAGATGATTTTGAGAGATACGTTGTACAGATGCGGCAACCCCACATTTGGGGAGGCGAGCCTGAGTTGCTTATGTCCTCGCATGTCCTGCAGATACCGATTACAGTTTATATGCGGGACAAGAATTCAAGGAGTCTCAGAATCATAGCTGAATATGGTAAAGAGTATGGTAAGGATAACCCTATCCGTGTACTTTATCATGGCTATGGACACTACGATGCACTGCGTGGTCCAAGTCCAACTACTGGTGCAGCGTCCAAGCCGTTGAAACAAAGAACAGAGATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

161

Amino Acids

18.58

Weight (kDa)

8.43

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTU	PF02338	11 - 137	1.2e-28	OTU-like cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57810 AT3G57810 AT3G57810 AT3G57810
fragaria_vesca	FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_6g22905
malus_domestica	MD14G1063700.v1.1 MD16G1115500.v1.1
prunus_persica	Prupe.1G231600_v2.0.a1 Prupe.1G231600_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1
pyrus_communis	pycom14g05150 pycom16g09800
rosa_chinensis	RchiOBHm_Chr2g0153721 RchiOBHm_Chr2g0156231 RchiOBHm_Chr3g0465711 RchiOBHm_Chr3g0480701 RchiOBHm_Chr4g0430871
rosa_laevigata	RLG00000006944 RLG00000023460
rosa_multiflora	Rmu_sc0001135.1_g000009 Rmu_sc0002620.1_g000002 Rmu_sc0003902.1_g000027 Rmu_sc0006263.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372540 Rroxscaffold_6G00401150
rosa_rugosa	Rorug03G0184800 Rorug03G0184900 Rorug04G0246100 Rorug04G0246200 Rorug04G0246300 Rorug04G0246400 Rorug04G0246500 Rorug04G0246600
rosa_samantha	Rh3AG237100 Rh3BG270200 Rh3CG266400 Rh3DG262500 Rh4AG302400 Rh4AG303300 Rh4BG310500 Rh4CG326900 Rh4DG306600
rosa_wichuraiana	Rw3G021230 Rw4G026280 Rw5G016580 Rw6G016010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccII	CGCG	1 cut(s)	33
AciI	CCGC	3 cut(s)	33, 229, 310
AcsI	RAATTY	2 cut(s)	158, 319
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	3 cut(s)	22, 222, 387
AfiI	CCNNNNNNNGG	3 cut(s)	243, 244, 440
AgsI	TTSAA	3 cut(s)	197, 324, 463
AluBI	AGCT	2 cut(s)	136, 344
AluI	AGCT	2 cut(s)	136, 344
Alw26I	GTCTC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	158, 319
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	3 cut(s)	32, 103, 120
BceAI	ACGGC	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	284
BisI	GCNGC	2 cut(s)	230, 447
BlsI	GCNGC	2 cut(s)	231, 448
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmsI	GCATC	3 cut(s)	216, 403, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 244, 440
Bse1I	ACTGG	1 cut(s)	445
BseLI	CCNNNNNNNGG	3 cut(s)	243, 244, 440
BseMII	CTCAG	2 cut(s)	249, 346
BseNI	ACTGG	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	243, 244, 440
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	326
Bsp1407I	TGTACA	2 cut(s)	20, 220
BspACI	CCGC	3 cut(s)	33, 229, 310
BspCNI	CTCAG	2 cut(s)	250, 345
BspFNI	CGCG	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	288
BsrGI	TGTACA	2 cut(s)	20, 220
BsrI	ACTGG	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstAUI	TGTACA	2 cut(s)	20, 220
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	4 cut(s)	80, 137, 258, 332
BstFNI	CGCG	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 283
BstNSI	RCATGY	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	458
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	2 cut(s)	180, 416
Cac8I	GCNNGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	425
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	21, 221, 386
CviAII	CATG	3 cut(s)	68, 278, 395
CviJI	RGCY	9 cut(s)	74, 94, 111, 136, 176, 256, 344, 399, 457
CviKI_1	RGCY	9 cut(s)	74, 94, 111, 136, 176, 256, 344, 399, 457
CviQI	GTAC	3 cut(s)	21, 221, 386
DdeI	CTNAG	4 cut(s)	80, 137, 258, 332
DraIII	CACNNNGTG	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	425
EcoRI	GAATTC	2 cut(s)	158, 319
FaeI	CATG	3 cut(s)	71, 281, 398
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	3 cut(s)	67, 277, 394
FauI	CCCGC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	230, 447
Fsp4HI	GCNGC	2 cut(s)	230, 447
GluI	GCNGC	2 cut(s)	230, 447
HgaI	GACGC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	71, 281, 398
HinfI	GANTC	2 cut(s)	328, 336
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	117, 335
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	3 cut(s)	36, 139, 165
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	4 cut(s)	286, 416, 446, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 283
HpyF3I	CTNAG	4 cut(s)	80, 137, 258, 332
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	71, 281, 398
LpnPI	CCDG	5 cut(s)	9, 72, 270, 296, 426
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	3 cut(s)	216, 403, 468
MaeII	ACGT	1 cut(s)	216
MboII	GAAGA	1 cut(s)	209
MluCI	AATT	2 cut(s)	158, 319
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	2 cut(s)	242, 283
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	2 cut(s)	399, 411
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	262, 283
NlaIII	CATG	3 cut(s)	71, 281, 398
NspI	RCATGY	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	336
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	231, 448
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	288
RsaI	GTAC	3 cut(s)	22, 222, 387
RsaNI	GTAC	3 cut(s)	21, 221, 386
RseI	CAYNNNNRTG	2 cut(s)	399, 411
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	230, 447
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	337
SetI	ASST	5 cut(s)	47, 138, 150, 219, 346
SfaNI	GCATC	3 cut(s)	216, 403, 468
SfcI	CTRYAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	399, 411
Sse9I	AATT	2 cut(s)	158, 319
SsiI	CCGC	3 cut(s)	33, 229, 310
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	219
TasI	AATT	2 cut(s)	158, 319
TatI	WGTACW	3 cut(s)	20, 220, 385
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	187, 423
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	3 cut(s)	56, 151, 171
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	2 cut(s)	187, 423
Van91I	CCANNNNNTGG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	2 cut(s)	158, 319
XceI	RCATGY	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.