Rmu_sc0003902.1_g000027

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003902.1
OG0000651
Physical Location & Seq
Forward (+)
112052 .. 114643
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003902.1_g000027.1.cds

Sequence Viewer

Length: 1032 bp
atgaaggtaaatcttgattatcaaggctatgtgaatacgattgtttgtactcacatcgaccagggtgcaaagaatgttgtctgcatgagtggcagtattgaagtgcagatgggcagtaagatctgtagtgtagtgtctcgaggagcatccagttcatgttgttaccgactgcagccagggaaatcgggaaataaatttggtggcttatccctcaccaagagtcgtccatctggtcaaacaccccatggaagctgtttcaggtcttacttctccacggatatgggcaactcacggtcattaacagttaatgctagaaaacctcagaaacgatgtctagaaatttcattggcatgtcagggtatgaaaacgagatttttggtcccaagacaaggaatgcttcccaaaatcaagtgtaatgtgggcccactgtcgtggccacaaggatgtgcgtctgctggtttgatttttgggttgctgatttgtaattcttctgagccaacacacgctgaagcagcttgtaaaactgatgataaggaatatgacgatgatttgtcatattcacatggaaaaaaagtttatactgattattccattattggaatacctggagatggaaggtgcatgttccgctctgttgctcatggcgcttgtttgcgagctggaaaatcagctcctagtccaagccttcagagagaattagcagatgacttgagagctagagttgcagatgagtttatcaaaaggagagaagagacagaatggtttgttgaaggtgattttgacacttatgtctcccaaataagaaagccacatgtatggggaggcgagcccgaattgttaatggcttcacatgttcttgaaatgccgatcacagtatacatgtatgatgaaaaggctggcggcttgataaccattgctgagtatgggcaagagtatgggaaggaaaatccaatcagagttctctatcatggttttggccattatgatgcattgcaaattctgggaaagagtggtggtaaatctaggctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

343

Amino Acids

37.68

Weight (kDa)

8.66

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 788
AccBSI CCGCTC 1 cut(s) 630
AccI GTMKAC 1 cut(s) 876
AciI CCGC 2 cut(s) 628, 900
AcoI YGGCCR 2 cut(s) 434, 976
AcsI RAATTY 3 cut(s) 194, 339, 996
AcuI CTGAAG 2 cut(s) 528, 671
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 389, 611
AflIII ACRYGT 3 cut(s) 811, 850, 879
AgsI TTSAA 3 cut(s) 101, 770, 860
AjnI CCWGG 3 cut(s) 60, 175, 604
AleI CACNNNNGTG 1 cut(s) 430
AluBI AGCT 5 cut(s) 252, 515, 659, 671, 716
AluI AGCT 5 cut(s) 252, 515, 659, 671, 716
Alw26I GTCTC 3 cut(s) 141, 746, 796
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 3 cut(s) 421, 434, 976
ApaI GGGCCC 1 cut(s) 425
ApeKI GCWGC 2 cut(s) 172, 512
ApoI RAATTY 3 cut(s) 194, 339, 996
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 3 cut(s) 379, 421, 422
AsuHPI GGTGA 2 cut(s) 205, 785
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 425
BalI TGGCCA 2 cut(s) 436, 978
BanII GRGCYC 2 cut(s) 425, 831
BbvI GCAGC 2 cut(s) 184, 524
BccI CCATC 3 cut(s) 103, 235, 605
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 3 cut(s) 62, 177, 606
BcoDI GTCTC 3 cut(s) 141, 746, 796
BfaI CTAG 5 cut(s) 312, 335, 675, 717, 1023
BfmI CTRYAG 2 cut(s) 124, 170
BfoI RGCGCY 1 cut(s) 648
BglII AGATCT 1 cut(s) 120
BisI GCNGC 3 cut(s) 173, 513, 901
BlsI GCNGC 3 cut(s) 174, 514, 902
Bme1390I CCNGG 3 cut(s) 62, 177, 606
Bme18I GGWCC 1 cut(s) 379
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 3 cut(s) 379, 421, 422
BmiI GGNNCC 2 cut(s) 381, 423
BmrFI CCNGG 3 cut(s) 62, 177, 606
BmsI GCATC 2 cut(s) 155, 976
BpmI CTGGAG 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 730
BsaJI CCNNGG 4 cut(s) 61, 176, 244, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 611
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 2 cut(s) 912, 989
BseBI CCWGG 3 cut(s) 62, 177, 606
BseDI CCNNGG 4 cut(s) 61, 176, 244, 273
BseGI GGATG 2 cut(s) 146, 449
BseLI CCNNNNNNNGG 2 cut(s) 389, 611
BseMI GCAATG 2 cut(s) 912, 989
BseMII CTCAG 3 cut(s) 335, 483, 909
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 425
BseXI GCAGC 2 cut(s) 184, 524
BsgI GTGCAG 1 cut(s) 125
BshFI GGCC 3 cut(s) 423, 436, 978
BsiHKCI CYCGRG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 389, 611
BsmAI GTCTC 3 cut(s) 141, 746, 796
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 3 cut(s) 423, 436, 978
BsoBI CYCGRG 1 cut(s) 138
Bsp120I GGGCCC 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 425, 831
Bsp143I GATC 2 cut(s) 120, 867
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 2 cut(s) 628, 900
BspANI GGCC 3 cut(s) 423, 436, 978
BspCNI CTCAG 3 cut(s) 334, 484, 910
BspLI GGNNCC 2 cut(s) 381, 423
BspMAI CTGCAG 1 cut(s) 174
BsrBI CCGCTC 1 cut(s) 630
BsrDI GCAATG 2 cut(s) 912, 989
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 4 cut(s) 61, 176, 244, 273
BssMI GATC 2 cut(s) 120, 867
BssNAI GTATAC 1 cut(s) 877
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 877
Bst2UI CCWGG 3 cut(s) 62, 177, 606
Bst4CI ACNGT 4 cut(s) 294, 304, 429, 874
Bst6I CTCTTC 1 cut(s) 744
BstC8I GCNNGC 3 cut(s) 657, 827, 898
BstDEI CTNAG 3 cut(s) 321, 492, 918
BstDSI CCRYGG 2 cut(s) 244, 273
BstF5I GGATG 2 cut(s) 146, 449
BstH2I RGCGCY 1 cut(s) 648
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 2 cut(s) 123, 870
BstMAI GTCTC 3 cut(s) 141, 746, 796
BstMBI GATC 2 cut(s) 120, 867
BstMWI GCNNNNNNNGC 5 cut(s) 90, 512, 627, 644, 722
BstNI CCWGG 3 cut(s) 62, 177, 606
BstNSI RCATGY 5 cut(s) 354, 625, 815, 854, 883
BstSCI CCNGG 3 cut(s) 60, 175, 604
BstSFI CTRYAG 2 cut(s) 124, 170
BstSLI GKGCMC 1 cut(s) 425
BstV1I GCAGC 2 cut(s) 184, 524
BstX2I RGATCY 1 cut(s) 120
BstXI CCANNNNNNTGG 3 cut(s) 280, 432, 816
BstYI RGATCY 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 877
BsuRI GGCC 3 cut(s) 423, 436, 978
BtgI CCRYGG 2 cut(s) 244, 273
BtsCI GGATG 2 cut(s) 146, 449
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 3 cut(s) 657, 827, 898
CfoI GCGC 1 cut(s) 647
Cfr13I GGNCC 3 cut(s) 379, 421, 422
CseI GACGC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 48
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 3 cut(s) 321, 492, 918
DpnI GATC 2 cut(s) 122, 869
DpnII GATC 2 cut(s) 120, 867
DrdI GACNNNNNNGTC 1 cut(s) 788
DseDI GACNNNNNNGTC 1 cut(s) 788
EaeI YGGCCR 2 cut(s) 434, 976
Eam1104I CTCTTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 744
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 2 cut(s) 425, 831
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 528, 671
Eco88I CYCGRG 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 60, 175, 604
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 991
EcoT38I GRGCYC 2 cut(s) 425, 831
ErhI CCWWGG 1 cut(s) 244
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 1 cut(s) 365
FblI GTMKAC 1 cut(s) 876
Fnu4HI GCNGC 3 cut(s) 173, 513, 901
FokI GGATG 2 cut(s) 133, 456
FriOI GRGCYC 2 cut(s) 425, 831
Fsp4HI GCNGC 3 cut(s) 173, 513, 901
FspBI CTAG 5 cut(s) 312, 335, 675, 717, 1023
GlaI GCGC 1 cut(s) 646
GluI GCNGC 3 cut(s) 173, 513, 901
GsuI CTGGAG 1 cut(s) 627
HaeII RGCGCY 1 cut(s) 648
HaeIII GGCC 3 cut(s) 423, 436, 978
HgaI GACGC 1 cut(s) 438
HhaI GCGC 1 cut(s) 647
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HinfI GANTC 1 cut(s) 220
HphI GGTGA 2 cut(s) 205, 785
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 4 cut(s) 324, 493, 690, 956
Hpy188III TCNNGA 5 cut(s) 14, 138, 186, 335, 857
Hpy8I GTNNAC 1 cut(s) 877
HpyAV CCTTC 4 cut(s) 609, 695, 764, 934
HpyCH4III ACNGT 4 cut(s) 294, 304, 429, 874
HpyCH4V TGCA 8 cut(s) 68, 84, 106, 172, 621, 725, 989, 994
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 512, 627, 644, 722
HpyF3I CTNAG 3 cut(s) 321, 492, 918
HspAI GCGC 1 cut(s) 645
Kzo9I GATC 2 cut(s) 120, 867
LmnI GCTCC 2 cut(s) 143, 676
Lsp1109I GCAGC 2 cut(s) 184, 524
LweI GCATC 2 cut(s) 155, 976
MaeI CTAG 5 cut(s) 312, 335, 675, 717, 1023
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 122, 869
MbiI CCGCTC 1 cut(s) 630
MboI GATC 2 cut(s) 120, 867
MboII GAAGA 2 cut(s) 480, 761
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 2 cut(s) 425, 831
MlsI TGGCCA 2 cut(s) 436, 978
MluCI AATT 6 cut(s) 194, 339, 484, 695, 833, 996
MluNI TGGCCA 2 cut(s) 436, 978
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 4 cut(s) 134, 221, 330, 815
Mox20I TGGCCA 2 cut(s) 436, 978
Mph1103I ATGCAT 1 cut(s) 991
MscI TGGCCA 2 cut(s) 436, 978
MseI TTAA 4 cut(s) 299, 306, 839, 1030
MslI CAYNNNNRTG 6 cut(s) 278, 349, 430, 442, 814, 984
Msp20I TGGCCA 2 cut(s) 436, 978
MspR9I CCNGG 3 cut(s) 62, 177, 606
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 3 cut(s) 62, 177, 606
MwoI GCNNNNNNNGC 5 cut(s) 90, 512, 627, 644, 722
NcoI CCATGG 1 cut(s) 244
NdeII GATC 2 cut(s) 120, 867
NlaIV GGNNCC 2 cut(s) 381, 423
NsiI ATGCAT 1 cut(s) 991
NspI RCATGY 5 cut(s) 354, 625, 815, 854, 883
OliI CACNNNNGTG 1 cut(s) 430
PaeR7I CTCGAG 1 cut(s) 138
PciI ACATGT 3 cut(s) 811, 850, 879
PctI GAATGC 1 cut(s) 399
PkrI GCNGC 3 cut(s) 174, 514, 902
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 3 cut(s) 811, 850, 879
Psp6I CCWGG 3 cut(s) 60, 175, 604
PspGI CCWGG 3 cut(s) 60, 175, 604
PspN4I GGNNCC 2 cut(s) 381, 423
PspOMI GGGCCC 1 cut(s) 421
PspPI GGNCC 3 cut(s) 379, 421, 422
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 6 cut(s) 278, 349, 430, 442, 814, 984
SaqAI TTAA 4 cut(s) 299, 306, 839, 1030
SatI GCNGC 3 cut(s) 173, 513, 901
Sau3AI GATC 2 cut(s) 120, 867
Sau96I GGNCC 3 cut(s) 379, 421, 422
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 3 cut(s) 62, 177, 606
SduI GDGCHC 2 cut(s) 425, 831
SfaNI GCATC 2 cut(s) 155, 976
SfcI CTRYAG 2 cut(s) 124, 170
Sfr274I CTCGAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 379
SlaI CTCGAG 1 cut(s) 138
SmiMI CAYNNNNRTG 6 cut(s) 278, 349, 430, 442, 814, 984
SmlI CTYRAG 2 cut(s) 138, 709
SmoI CTYRAG 2 cut(s) 138, 709
Sse9I AATT 6 cut(s) 194, 339, 484, 695, 833, 996
SsiI CCGC 2 cut(s) 628, 900
SspMI CTAG 5 cut(s) 312, 335, 675, 717, 1023
StyD4I CCNGG 3 cut(s) 60, 175, 604
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 4 cut(s) 294, 304, 429, 874
TaqI TCGA 2 cut(s) 57, 139
TasI AATT 6 cut(s) 194, 339, 484, 695, 833, 996
TatI WGTACW 1 cut(s) 47
TauI GCSGC 1 cut(s) 903
Tru1I TTAA 4 cut(s) 299, 306, 839, 1030
Tru9I TTAA 4 cut(s) 299, 306, 839, 1030
TscAI CASTG 1 cut(s) 432
TseI GCWGC 2 cut(s) 172, 512
TspDTI ATGAA 5 cut(s) 17, 144, 333, 377, 903
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 3 cut(s) 194, 339, 996
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 5 cut(s) 354, 625, 815, 854, 883
XhoI CTCGAG 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 876
XspI CTAG 5 cut(s) 312, 335, 675, 717, 1023
Zsp2I ATGCAT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.