Prupe.1G231600_v2.0.a1

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000651
Physical Location & Seq
Forward (+)
24670788 .. 24673255
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G231600.1

Sequence Viewer

Length: 468 bp
ATGCCGAAACGAGAAACTCTGCTTGGCATACCTGGAGATGGAAGATGTTTGTTCCGGTCTGTGGTTCACGGTGCTTGTCTAAGAGCAGGGAAGCCATCTCCAAGCGACGCTCTTCAGAGAGAACTTGCAGATGAGCTTAGAGCGAAAGTAGCAGATGAGTTCATTAAAAGGAGGGCAGACACCGAATGGTTTCTTGAAGATGATTTTGAAACGTATGTTGTACAGATGCGACAACCGCACATTTGGGGAGGCGAACCTGAGTTGCTTATGTCCTCACATGTCCTAAAGATGCCGATTACAGTTTATATGCGGGACAATGATTCTGGTAGCCTGAAAATCATAGCTGAATATGGTCAAGAGTACGGTAAGGATAACCCTATCCGTGTACTTTATCATGGTTATGGACACTACGATACAATGCGCGGTTCGGCTACTGGTGCACAGTCCAAGTTGTACAAACAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

156

Amino Acids

17.68

Weight (kDa)

6.97

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 423
AciI CCGC 3 cut(s) 236, 310, 423
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 4 cut(s) 222, 362, 387, 455
AfiI CCNNNNNNNGG 2 cut(s) 38, 61
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 2 cut(s) 197, 209
AjnI CCWGG 1 cut(s) 31
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 136, 344
AluI AGCT 2 cut(s) 136, 344
Alw21I GWGCWC 1 cut(s) 442
Alw44I GTGCAC 1 cut(s) 438
ApaLI GTGCAC 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 442
BccI CCATC 2 cut(s) 32, 103
BciT130I CCWGG 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 2 cut(s) 216, 279
BpmI CTGGAG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 61
Bse1I ACTGG 1 cut(s) 439
BseBI CCWGG 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 38, 61
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 439
BseSI GKGCMC 1 cut(s) 442
Bsh1236I CGCG 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 442
BsiSI CCGG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 38, 61
BsmFI GGGAC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 442
Bsp1407I TGTACA 2 cut(s) 220, 453
BspACI CCGC 3 cut(s) 236, 310, 423
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 1 cut(s) 423
BspQI GCTCTTC 1 cut(s) 117
BsrGI TGTACA 2 cut(s) 220, 453
BsrI ACTGG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 4 cut(s) 71, 301, 365, 444
Bst6I CTCTTC 1 cut(s) 117
BstAUI TGTACA 2 cut(s) 220, 453
BstDEI CTNAG 3 cut(s) 80, 137, 258
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 1 cut(s) 423
BstMWI GCNNNNNNNGC 3 cut(s) 149, 235, 437
BstNI CCWGG 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 1 cut(s) 423
CfoI GCGC 1 cut(s) 423
CseI GACGC 1 cut(s) 116
Csp6I GTAC 4 cut(s) 221, 361, 386, 454
CviAII CATG 2 cut(s) 278, 395
CviJI RGCY 5 cut(s) 94, 136, 330, 344, 431
CviKI_1 RGCY 5 cut(s) 94, 136, 330, 344, 431
CviQI GTAC 4 cut(s) 221, 361, 386, 454
DdeI CTNAG 3 cut(s) 80, 137, 258
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 281, 398
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 277, 394
FauI CCCGC 1 cut(s) 303
GlaI GCGC 1 cut(s) 422
GsuI CTGGAG 1 cut(s) 54
HapII CCGG 1 cut(s) 55
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 423
Hin1II CATG 2 cut(s) 281, 398
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 1 cut(s) 320
HpaII CCGG 1 cut(s) 55
Hpy166II GTNNAC 3 cut(s) 67, 386, 440
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 194, 356
Hpy8I GTNNAC 3 cut(s) 67, 386, 440
Hpy99I CGWCG 1 cut(s) 110
HpyCH4III ACNGT 4 cut(s) 71, 301, 365, 444
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 128, 440
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 235, 437
HpyF3I CTNAG 3 cut(s) 80, 137, 258
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 2 cut(s) 281, 398
HspAI GCGC 1 cut(s) 421
LguI GCTCTTC 1 cut(s) 117
LpnPI CCDG 8 cut(s) 18, 45, 68, 72, 270, 309, 344, 420
LweI GCATC 2 cut(s) 216, 279
MaeII ACGT 1 cut(s) 212
MboII GAAGA 3 cut(s) 54, 104, 209
MhlI GDGCHC 1 cut(s) 442
MnlI CCTC 3 cut(s) 165, 242, 283
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 3 cut(s) 149, 235, 437
NlaIII CATG 2 cut(s) 281, 398
NspI RCATGY 1 cut(s) 281
PciI ACATGT 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 320
PscI ACATGT 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
RsaI GTAC 4 cut(s) 222, 362, 387, 455
RsaNI GTAC 4 cut(s) 221, 361, 386, 454
RseI CAYNNNNRTG 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 442
SetI ASST 5 cut(s) 34, 138, 215, 259, 346
SfaNI GCATC 2 cut(s) 216, 279
SmiMI CAYNNNNRTG 1 cut(s) 399
SsiI CCGC 3 cut(s) 236, 310, 423
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 4 cut(s) 71, 301, 365, 444
TaiI ACGT 1 cut(s) 215
TatI WGTACW 3 cut(s) 220, 385, 453
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 151
TspGWI ACGGA 1 cut(s) 371
VneI GTGCAC 1 cut(s) 438
XceI RCATGY 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.