RLG00000006944

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000651
Physical Location & Seq
Reverse (-)
12069968 .. 12071610
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006944

Sequence Viewer

Length: 474 bp
ATGACTTGTACAGGCATACGTGGAGATGGAAGGTGTTTGTTTCGATCTGTGGTTCATGGAGCTTGTCTAAGAGCAGGGAAGCCATCTCCAAGTGACCGCCATCAGAAAGAACTTGCAGATGAGCTTAGAGAGAAGGTAGCAGATGAATTCATTAAGAGGAGGGCTGACACTGAATGGTTTCTTGAAGATGATTTTGAGAGATACGTTGTACAGATGCGGCAACCCCACATTTGGGGAGGCGAGCCTGAGTTGCTTATGTCCTCACATGTCCTACAGATACCGATTACAGTTTATATGCGGGACAAGAATTCTAGGAGTCACAGAATCATAGCTGAATATGGTCAAGAGTATGGTAAGGATAACCCTATCCGTGTACTTTATCATGGCTATGGACACTACGATGCATTGCGTGGTCCAAGTCCAACTACTGCTGCAGCGTCCAAGCCGTTGAAACAAAGAACAGAGATGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

158

Amino Acids

18.1

Weight (kDa)

8.44

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 7 - 133 1e-28 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 97, 217, 298
AcsI RAATTY 2 cut(s) 146, 307
AfaI GTAC 3 cut(s) 10, 210, 375
AfiI CCNNNNNNNGG 2 cut(s) 231, 232
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 2 cut(s) 185, 451
AluBI AGCT 3 cut(s) 62, 124, 332
AluI AGCT 3 cut(s) 62, 124, 332
ApeKI GCWGC 2 cut(s) 431, 434
ApoI RAATTY 2 cut(s) 146, 307
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 413
AvaII GGWCC 1 cut(s) 413
BbvI GCAGC 2 cut(s) 418, 446
BccI CCATC 3 cut(s) 20, 91, 108
BceAI ACGGC 1 cut(s) 430
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 2 cut(s) 272, 432
BisI GCNGC 3 cut(s) 218, 432, 435
BlsI GCNGC 3 cut(s) 219, 433, 436
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmsI GCATC 3 cut(s) 204, 391, 456
BsaAI YACGTR 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 232
Bse3DI GCAATG 1 cut(s) 404
BseLI CCNNNNNNNGG 2 cut(s) 231, 232
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 418, 446
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 231, 232
BsmFI GGGAC 1 cut(s) 314
Bsp1407I TGTACA 2 cut(s) 8, 208
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 3 cut(s) 97, 217, 298
BspCNI CTCAG 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 404
BsrGI TGTACA 2 cut(s) 8, 208
BssMI GATC 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 289
BstAUI TGTACA 2 cut(s) 8, 208
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 68, 125, 246
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 269
BstSFI CTRYAG 2 cut(s) 272, 432
BstV1I GCAGC 2 cut(s) 418, 446
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 413
CseI GACGC 1 cut(s) 426
Csp6I GTAC 3 cut(s) 9, 209, 374
CviAII CATG 3 cut(s) 56, 266, 383
CviJI RGCY 8 cut(s) 62, 82, 124, 164, 244, 332, 387, 445
CviKI_1 RGCY 8 cut(s) 62, 82, 124, 164, 244, 332, 387, 445
CviQI GTAC 3 cut(s) 9, 209, 374
DdeI CTNAG 3 cut(s) 68, 125, 246
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 413
EcoRI GAATTC 2 cut(s) 146, 307
EcoT22I ATGCAT 1 cut(s) 406
FaeI CATG 3 cut(s) 59, 269, 386
FaqI GGGAC 1 cut(s) 314
FatI CATG 3 cut(s) 55, 265, 382
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 218, 432, 435
Fsp4HI GCNGC 3 cut(s) 218, 432, 435
FspBI CTAG 1 cut(s) 312
GluI GCNGC 3 cut(s) 218, 432, 435
HgaI GACGC 1 cut(s) 426
Hin1II CATG 3 cut(s) 59, 269, 386
HinfI GANTC 2 cut(s) 316, 324
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 182, 344
Hpy8I GTNNAC 1 cut(s) 374
HpyAV CCTTC 2 cut(s) 24, 127
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 2 cut(s) 19, 204
HpyCH4V TGCA 4 cut(s) 116, 404, 434, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 3 cut(s) 68, 125, 246
HpySE526I ACGT 2 cut(s) 19, 204
Hsp92II CATG 3 cut(s) 59, 269, 386
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 2 cut(s) 60, 258
Lsp1109I GCAGC 2 cut(s) 418, 446
LweI GCATC 3 cut(s) 204, 391, 456
MaeI CTAG 1 cut(s) 312
MaeII ACGT 2 cut(s) 19, 204
MaeIII GTNAC 2 cut(s) 92, 317
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 1 cut(s) 197
MluCI AATT 2 cut(s) 146, 307
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 446
MnlI CCTC 4 cut(s) 150, 153, 230, 271
Mph1103I ATGCAT 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 2 cut(s) 387, 399
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 1 cut(s) 44
NlaIII CATG 3 cut(s) 59, 269, 386
NmuCI GTSAC 2 cut(s) 92, 317
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 269
PciI ACATGT 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 3 cut(s) 219, 433, 436
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
Ppu21I YACGTR 1 cut(s) 20
PscI ACATGT 1 cut(s) 265
PspPI GGNCC 1 cut(s) 413
PstI CTGCAG 1 cut(s) 436
RsaI GTAC 3 cut(s) 10, 210, 375
RsaNI GTAC 3 cut(s) 9, 209, 374
RseI CAYNNNNRTG 2 cut(s) 387, 399
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 218, 432, 435
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 325
SetI ASST 7 cut(s) 22, 35, 64, 126, 138, 207, 334
SfaNI GCATC 3 cut(s) 204, 391, 456
SfcI CTRYAG 2 cut(s) 272, 432
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 2 cut(s) 387, 399
Sse9I AATT 2 cut(s) 146, 307
SsiI CCGC 3 cut(s) 97, 217, 298
SspMI CTAG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 2 cut(s) 22, 207
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 146, 307
TatI WGTACW 3 cut(s) 8, 208, 373
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 92, 317
TseI GCWGC 2 cut(s) 431, 434
Tsp45I GTSAC 2 cut(s) 92, 317
TspDTI ATGAA 3 cut(s) 44, 139, 159
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 2 cut(s) 146, 307
XceI RCATGY 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.