pycom14g05150

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000651
Physical Location & Seq
Reverse (-)
4950075 .. 4952707
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05150.1

Sequence Viewer

Length: 1044 bp
ATGAAGTTAAATCTCGATTACCAAGGCTATGCGAACGCAATTGTTTGTCCTCCCATTAACCATTCTTCGAAGACTACTGTCTGCCGGAGTGACTGTACTCTAATGCAGATGGGCAGTAAGATCTGTAGTGTGGTGTCACGAGGAGCATCAAGTTCATGTTGTTACGCCCTGCAGACGGGGAAGTCAGGAACAAAGTTTGTCCGTTTTTCTAACCCCAAGACTCGTCCATCCAGTATTGGCCAAACATCCTATACAAGCTGCTTCAAATCTTTCTTCTCCAAGGAAATAGGCAACTCACAGTCATTAACAGTTAATGCTGGAGGGCCTCATAAGCGATGTTTTGACATTTCATTTGCCTGTCACGGTATGAAAACCAGGCTTTTGGTTTCAGGACAAGGAATGCTTCCCAAAATCAAGTGTAATGTGCGCCGTGTATCTTGCCCACAAGGATGCGCCTCTTCTGGCTTATTATTTGGGTTGTTGGTCTGTAATTGTTCTGAATCAGCGAATGCTCAAGCAGCTCACAAGGACAATAAGGAAGAGGACAGTGATTTGTCATATGTAAAATTTTCTCATGGGAAAAAGGTTTACACTGACTATTCTATCATTGGAATACCTGGCGACGGGAGGTGCTTATTCCGTTCAGTTGCTCATGGGGCTCATTTACGAGCTGGAAAATCAGCTCCCAGTGAGAGCCTTCAGAGAGAATTAGCGGATAGCTTGAGAGCTAGAGTTGCGGATGAATTTATCAAAAGGAGGGAAGAAACCGAATGGTTTGTTGAAGGAAATTTTGACACTTACGTTTCCCAAATAAGAAAGCCACATGTATGGGGAGGTGAGCCTGAATTGTTCATGGCTTCACATGTTCTCCAGATGCCAATAACAGTATACATGTACGATGAGAAGGCTGGTGGCTTGATAACCATTGCCGAGTACGGGCAAGAATACGGTACGGACAACCCGATCAGAGTTCTCTACCACGGCTTTGGCCATTATGACGCGTTGCAGATTCCCGGAAAGAACCGAGGTAGATCGAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

348

Amino Acids

38.21

Weight (kDa)

9.08

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 206 - 332 7.6e-29 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 888
AccII CGCG 1 cut(s) 1001
AciI CCGC 2 cut(s) 713, 737
AcoI YGGCCR 2 cut(s) 238, 988
AcsI RAATTY 3 cut(s) 566, 743, 787
AcuI CTGAAG 1 cut(s) 683
AfaI GTAC 4 cut(s) 97, 896, 935, 952
AfiI CCNNNNNNNGG 3 cut(s) 175, 623, 936
AflIII ACRYGT 4 cut(s) 823, 862, 891, 999
AgsI TTSAA 2 cut(s) 265, 782
AjnI CCWGG 2 cut(s) 374, 616
AluBI AGCT 6 cut(s) 258, 521, 671, 683, 720, 728
AluI AGCT 6 cut(s) 258, 521, 671, 683, 720, 728
AoxI GGCC 3 cut(s) 238, 323, 988
ApeKI GCWGC 2 cut(s) 258, 518
ApoI RAATTY 3 cut(s) 566, 743, 787
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 2 cut(s) 429, 455
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 1 cut(s) 1014
AsuHPI GGTGA 1 cut(s) 848
AsuII TTCGAA 1 cut(s) 68
BalI TGGCCA 2 cut(s) 240, 990
BanII GRGCYC 1 cut(s) 661
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 245, 530
BccI CCATC 2 cut(s) 103, 235
BceAI ACGGC 2 cut(s) 414, 997
BciT130I CCWGG 2 cut(s) 376, 618
BcnI CCSGG 1 cut(s) 1014
BfaI CTAG 1 cut(s) 729
BfmI CTRYAG 2 cut(s) 124, 170
BglII AGATCT 1 cut(s) 120
BisI GCNGC 2 cut(s) 259, 519
BlsI GCNGC 2 cut(s) 260, 520
Bme1390I CCNGG 3 cut(s) 376, 618, 1014
BmgT120I GGNCC 1 cut(s) 323
BmrFI CCNGG 3 cut(s) 376, 618, 1014
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 3 cut(s) 155, 440, 864
BmuI ACTGGG 1 cut(s) 681
BoxI GACNNNNGTC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 2 cut(s) 339, 854
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 498, 742
BpuMI CCSGG 1 cut(s) 1014
BsaJI CCNNGG 4 cut(s) 22, 279, 979, 1024
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 852, 882
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 623, 936
Bse1I ACTGG 2 cut(s) 231, 687
Bse3DI GCAATG 1 cut(s) 924
BseBI CCWGG 2 cut(s) 376, 618
BseDI CCNNGG 4 cut(s) 22, 279, 979, 1024
BseGI GGATG 4 cut(s) 227, 245, 455, 745
BseLI CCNNNNNNNGG 3 cut(s) 175, 623, 936
BseMI GCAATG 1 cut(s) 924
BseNI ACTGG 2 cut(s) 231, 687
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 245, 530
Bsh1236I CGCG 1 cut(s) 1001
BshFI GGCC 3 cut(s) 240, 325, 990
BsiSI CCGG 2 cut(s) 85, 1014
BslI CCNNNNNNNGG 3 cut(s) 175, 623, 936
BsmI GAATGC 2 cut(s) 405, 514
BsnI GGCC 3 cut(s) 240, 325, 990
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 3 cut(s) 120, 963, 1031
BspACI CCGC 2 cut(s) 713, 737
BspANI GGCC 3 cut(s) 240, 325, 990
BspFNI CGCG 1 cut(s) 1001
BspMAI CTGCAG 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 2 cut(s) 231, 687
BssECI CCNNGG 4 cut(s) 22, 279, 979, 1024
BssMI GATC 3 cut(s) 120, 963, 1031
BssNAI GTATAC 1 cut(s) 889
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 22, 279
Bst1107I GTATAC 1 cut(s) 889
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 376, 618
Bst4CI ACNGT 8 cut(s) 79, 95, 300, 310, 365, 548, 886, 950
Bst6I CTCTTC 2 cut(s) 463, 534
BstBI TTCGAA 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 979
BstF5I GGATG 4 cut(s) 227, 245, 455, 745
BstFNI CGCG 1 cut(s) 1001
BstHHI GCGC 2 cut(s) 429, 455
BstKTI GATC 3 cut(s) 123, 966, 1034
BstMBI GATC 3 cut(s) 120, 963, 1031
BstMWI GCNNNNNNNGC 4 cut(s) 331, 518, 656, 734
BstNI CCWGG 2 cut(s) 376, 618
BstNSI RCATGY 3 cut(s) 827, 866, 895
BstPAI GACNNNNGTC 1 cut(s) 77
BstSCI CCNGG 3 cut(s) 374, 616, 1012
BstSFI CTRYAG 2 cut(s) 124, 170
BstUI CGCG 1 cut(s) 1001
BstV1I GCAGC 2 cut(s) 245, 530
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 120
BstXI CCANNNNNNTGG 3 cut(s) 382, 828, 986
BstYI RGATCY 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 889
BsuRI GGCC 3 cut(s) 240, 325, 990
BtgI CCRYGG 1 cut(s) 979
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 4 cut(s) 227, 245, 455, 745
BtsIMutI CAGTG 3 cut(s) 553, 591, 694
CfoI GCGC 2 cut(s) 429, 455
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 1007
Csp6I GTAC 4 cut(s) 96, 895, 934, 951
CviAII CATG 7 cut(s) 156, 575, 653, 824, 853, 863, 892
CviQI GTAC 4 cut(s) 96, 895, 934, 951
DpnI GATC 3 cut(s) 122, 965, 1033
DpnII GATC 3 cut(s) 120, 963, 1031
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 2 cut(s) 238, 988
Eam1104I CTCTTC 2 cut(s) 463, 534
EarI CTCTTC 2 cut(s) 463, 534
Eco130I CCWWGG 2 cut(s) 22, 279
Eco24I GRGCYC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 683
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 2 cut(s) 374, 616
EcoT14I CCWWGG 2 cut(s) 22, 279
EcoT38I GRGCYC 1 cut(s) 661
ErhI CCWWGG 2 cut(s) 22, 279
FaeI CATG 7 cut(s) 159, 578, 656, 827, 856, 866, 895
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FatI CATG 7 cut(s) 155, 574, 652, 823, 852, 862, 891
FauNDI CATATG 1 cut(s) 559
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 2 cut(s) 259, 519
FokI GGATG 4 cut(s) 214, 232, 462, 752
FriOI GRGCYC 1 cut(s) 661
Fsp4HI GCNGC 2 cut(s) 259, 519
FspBI CTAG 1 cut(s) 729
GlaI GCGC 2 cut(s) 428, 454
GluI GCNGC 2 cut(s) 259, 519
GsuI CTGGAG 2 cut(s) 339, 854
HaeIII GGCC 3 cut(s) 240, 325, 990
HapII CCGG 2 cut(s) 85, 1014
HgaI GACGC 1 cut(s) 1007
HhaI GCGC 2 cut(s) 429, 455
Hin1II CATG 7 cut(s) 159, 578, 656, 827, 856, 866, 895
Hin6I GCGC 2 cut(s) 427, 453
HinP1I GCGC 2 cut(s) 427, 453
HinfI GANTC 3 cut(s) 220, 500, 1009
HpaII CCGG 2 cut(s) 85, 1014
HphI GGTGA 1 cut(s) 848
Hpy166II GTNNAC 2 cut(s) 589, 889
Hpy188I TCNGA 3 cut(s) 499, 702, 968
Hpy188III TCNNGA 5 cut(s) 14, 138, 186, 390, 871
Hpy8I GTNNAC 2 cut(s) 589, 889
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 3 cut(s) 707, 776, 898
HpyCH4III ACNGT 8 cut(s) 79, 95, 300, 310, 365, 548, 886, 950
HpyCH4IV ACGT 1 cut(s) 801
HpyCH4V TGCA 3 cut(s) 106, 172, 1006
HpyF10VI GCNNNNNNNGC 4 cut(s) 331, 518, 656, 734
HpySE526I ACGT 1 cut(s) 801
Hsp92II CATG 7 cut(s) 159, 578, 656, 827, 856, 866, 895
HspAI GCGC 2 cut(s) 427, 453
Kzo9I GATC 3 cut(s) 120, 963, 1031
LmnI GCTCC 2 cut(s) 143, 688
Lsp1109I GCAGC 2 cut(s) 245, 530
LweI GCATC 3 cut(s) 155, 440, 864
MaeI CTAG 1 cut(s) 729
MaeII ACGT 1 cut(s) 801
MaeIII GTNAC 4 cut(s) 89, 135, 161, 359
MalI GATC 3 cut(s) 122, 965, 1033
MboI GATC 3 cut(s) 120, 963, 1031
MboII GAAGA 6 cut(s) 57, 82, 265, 450, 551, 773
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 661
MlsI TGGCCA 2 cut(s) 240, 990
MluCI AATT 7 cut(s) 39, 490, 566, 707, 743, 787, 845
MluI ACGCGT 1 cut(s) 999
MluNI TGGCCA 2 cut(s) 240, 990
MlyI GAGTC 1 cut(s) 214
Mox20I TGGCCA 2 cut(s) 240, 990
MscI TGGCCA 2 cut(s) 240, 990
MseI TTAA 4 cut(s) 8, 57, 305, 312
MslI CAYNNNNRTG 2 cut(s) 448, 826
Msp20I TGGCCA 2 cut(s) 240, 990
MspI CCGG 2 cut(s) 85, 1014
MspR9I CCNGG 3 cut(s) 376, 618, 1014
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 2 cut(s) 405, 514
MvaI CCWGG 2 cut(s) 376, 618
MvnI CGCG 1 cut(s) 1001
MwoI GCNNNNNNNGC 4 cut(s) 331, 518, 656, 734
NciI CCSGG 1 cut(s) 1014
NdeI CATATG 1 cut(s) 559
NdeII GATC 3 cut(s) 120, 963, 1031
NlaIII CATG 7 cut(s) 159, 578, 656, 827, 856, 866, 895
NmeAIII GCCGAG 1 cut(s) 955
NmuCI GTSAC 3 cut(s) 89, 135, 359
NspI RCATGY 3 cut(s) 827, 866, 895
NspV TTCGAA 1 cut(s) 68
PciI ACATGT 3 cut(s) 823, 862, 891
PcsI WCGNNNNNNNCGW 1 cut(s) 959
PctI GAATGC 2 cut(s) 405, 514
PfeI GAWTC 2 cut(s) 500, 1009
PfoI TCCNGGA 1 cut(s) 1012
PkrI GCNGC 2 cut(s) 260, 520
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PscI ACATGT 3 cut(s) 823, 862, 891
PshAI GACNNNNGTC 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 374, 616
PspGI CCWGG 2 cut(s) 374, 616
PspPI GGNCC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 4 cut(s) 97, 896, 935, 952
RsaNI GTAC 4 cut(s) 96, 895, 934, 951
RseI CAYNNNNRTG 2 cut(s) 448, 826
SaqAI TTAA 4 cut(s) 8, 57, 305, 312
SatI GCNGC 2 cut(s) 259, 519
Sau3AI GATC 3 cut(s) 120, 963, 1031
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 3 cut(s) 376, 618, 1014
SduI GDGCHC 1 cut(s) 661
SfaNI GCATC 3 cut(s) 155, 440, 864
SfcI CTRYAG 2 cut(s) 124, 170
SfuI TTCGAA 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 448, 826
SmlI CTYRAG 2 cut(s) 513, 721
SmoI CTYRAG 2 cut(s) 513, 721
Sse9I AATT 7 cut(s) 39, 490, 566, 707, 743, 787, 845
SsiI CCGC 2 cut(s) 713, 737
SspMI CTAG 1 cut(s) 729
StyD4I CCNGG 3 cut(s) 374, 616, 1012
StyI CCWWGG 2 cut(s) 22, 279
TaaI ACNGT 8 cut(s) 79, 95, 300, 310, 365, 548, 886, 950
TaiI ACGT 1 cut(s) 804
TaqI TCGA 3 cut(s) 15, 68, 1034
TasI AATT 7 cut(s) 39, 490, 566, 707, 743, 787, 845
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 2 cut(s) 500, 1009
Tru1I TTAA 4 cut(s) 8, 57, 305, 312
Tru9I TTAA 4 cut(s) 8, 57, 305, 312
TscAI CASTG 3 cut(s) 553, 598, 694
TseFI GTSAC 3 cut(s) 89, 135, 359
TseI GCWGC 2 cut(s) 258, 518
Tsp45I GTSAC 3 cut(s) 89, 135, 359
TspDTI ATGAA 6 cut(s) 17, 144, 339, 383, 756, 841
TspGWI ACGGA 3 cut(s) 191, 629, 968
TspRI CASTG 3 cut(s) 553, 598, 694
XapI RAATTY 3 cut(s) 566, 743, 787
XceI RCATGY 3 cut(s) 827, 866, 895
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.