Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000651

Physical Location & Seq

Genomic Coordinates Forward (+)

61573039 .. 61574901

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG303300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATGACCAAGCAAAATGGCATACGCGGAGATGGAAGGTGTTTGTTTCGTTCTGTGGTTCATGGAGCTTGTCTAAGAGCAGGGAAGCCATCTCCAAGTGACAGCCATCAGAAAGAACTTGCAGATGAGCTTAGAGAGAAGGTAGCAGATGAATTCATTAAGAGGAGGGCTGACACTGAATGGTTTCTTGAAGATGATTTTGAGAGATACGTTGTACAGATGCGGCAACCCCACATTTGGGGAGGCGAGCCTGAGTTGCTTATGTCCTCGCATGTCCTGCAGATACCGATTACAGTTTATATGCGGGACAAGAATTCTAGGAGTCTCAGAATCATAGCTGAATATGGCAAAGAGTATGGTAAGGATAACCCTATCCGTGTACTTTATCATGGCTATGGACACTACGATGCATTGCGTGGTCCAAGTCCAACTACTGGTACAGCGTCCAAGCTGTTGAAACAAAGAACAGAGATGCAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

160

Amino Acids

18.5

Weight (kDa)

8.85

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTU	PF02338	9 - 135	1.2e-28	OTU-like cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57810 AT3G57810 AT3G57810 AT3G57810
fragaria_vesca	FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_2g35301 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_4g24091 FvH4_6g22905
malus_domestica	MD14G1063700.v1.1 MD16G1115500.v1.1
prunus_persica	Prupe.1G231600_v2.0.a1 Prupe.1G231600_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1 Prupe.7G070500_v2.0.a1
pyrus_communis	pycom14g05150 pycom16g09800
rosa_chinensis	RchiOBHm_Chr2g0153721 RchiOBHm_Chr2g0156231 RchiOBHm_Chr3g0465711 RchiOBHm_Chr3g0480701 RchiOBHm_Chr4g0430871
rosa_laevigata	RLG00000006944 RLG00000023460
rosa_multiflora	Rmu_sc0001135.1_g000009 Rmu_sc0002620.1_g000002 Rmu_sc0003902.1_g000027 Rmu_sc0006263.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372540 Rroxscaffold_6G00401150
rosa_rugosa	Rorug03G0184800 Rorug03G0184900 Rorug04G0246100 Rorug04G0246200 Rorug04G0246300 Rorug04G0246400 Rorug04G0246500 Rorug04G0246600
rosa_samantha	Rh3AG237100 Rh3BG270200 Rh3CG266400 Rh3DG262500 Rh4AG302400 Rh4AG303300 Rh4BG310500 Rh4CG326900 Rh4DG306600
rosa_wichuraiana	Rw3G021230 Rw4G026280 Rw5G016580 Rw6G016010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccII	CGCG	1 cut(s)	27
AciI	CCGC	3 cut(s)	27, 223, 304
AcsI	RAATTY	2 cut(s)	152, 313
AfaI	GTAC	3 cut(s)	216, 381, 439
AfiI	CCNNNNNNNGG	3 cut(s)	237, 238, 434
AgsI	TTSAA	2 cut(s)	191, 457
AluBI	AGCT	4 cut(s)	68, 130, 338, 451
AluI	AGCT	4 cut(s)	68, 130, 338, 451
Alw26I	GTCTC	1 cut(s)	329
ApoI	RAATTY	2 cut(s)	152, 313
Asp700I	GAANNNNTTC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	419
BccI	CCATC	3 cut(s)	26, 97, 114
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmsI	GCATC	3 cut(s)	210, 397, 462
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 238, 434
Bse1I	ACTGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	237, 238, 434
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	243, 340
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	237, 238, 434
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	320
Bsp1407I	TGTACA	1 cut(s)	214
BspACI	CCGC	3 cut(s)	27, 223, 304
BspCNI	CTCAG	2 cut(s)	244, 339
BspFNI	CGCG	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	439
Bst4CI	ACNGT	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	4 cut(s)	74, 131, 252, 326
BstFNI	CGCG	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 277
BstNSI	RCATGY	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	3 cut(s)	215, 380, 438
CviAII	CATG	3 cut(s)	62, 272, 389
CviJI	RGCY	9 cut(s)	68, 88, 105, 130, 170, 250, 338, 393, 451
CviKI_1	RGCY	9 cut(s)	68, 88, 105, 130, 170, 250, 338, 393, 451
CviQI	GTAC	3 cut(s)	215, 380, 438
DdeI	CTNAG	4 cut(s)	74, 131, 252, 326
Eco47I	GGWCC	1 cut(s)	419
EcoRI	GAATTC	2 cut(s)	152, 313
EcoT22I	ATGCAT	1 cut(s)	412
FaeI	CATG	3 cut(s)	65, 275, 392
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	61, 271, 388
FauI	CCCGC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	224
HgaI	GACGC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	65, 275, 392
HinfI	GANTC	2 cut(s)	322, 330
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	2 cut(s)	111, 329
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	30, 133
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	4 cut(s)	122, 280, 410, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 277
HpyF3I	CTNAG	4 cut(s)	74, 131, 252, 326
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	65, 275, 392
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	4 cut(s)	66, 264, 290, 420
LweI	GCATC	3 cut(s)	210, 397, 462
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	98
MboII	GAAGA	1 cut(s)	203
MluCI	AATT	2 cut(s)	152, 313
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	4 cut(s)	156, 159, 236, 277
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	2 cut(s)	393, 405
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	256, 277
NlaIII	CATG	3 cut(s)	65, 275, 392
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	1 cut(s)	225
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	3 cut(s)	216, 381, 439
RsaNI	GTAC	3 cut(s)	215, 380, 438
RseI	CAYNNNNRTG	2 cut(s)	393, 405
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	224
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	331
SetI	ASST	7 cut(s)	41, 70, 132, 144, 213, 340, 453
SfaNI	GCATC	3 cut(s)	210, 397, 462
SfcI	CTRYAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	393, 405
Sse9I	AATT	2 cut(s)	152, 313
SsiI	CCGC	3 cut(s)	27, 223, 304
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	213
TasI	AATT	2 cut(s)	152, 313
TatI	WGTACW	2 cut(s)	214, 379
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	50, 145, 165
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	2 cut(s)	152, 313
XceI	RCATGY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	318
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.