Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Forward (+)

23004788 .. 23007006

Gene Structure 2219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGAGGCGGGAGAGCGGCGCAATGGCGATTCGATGAGTCACAATCACCGCGCACCGAAGAAGCCACGTCTCGCTGGGTTATTAACCGAGTCAGATATCGACTCTGAGTTCGCTCACCACCAGACCGGTGTTGCCAGAATCAACAACGGTAGCTTCGGGTGCTGTCCTGGCTCCGTTCTCGAGGCGCAACGCGAGTGGCAGCTTCGTTATCTCCGTCAGCCTGATGAGTTCTACTTCAACGGTCTCCGTCGTGGACTTCTCGCTTCTCGAACTGTGATCAGTGACCTAATCAACGCCGATGATGTTGATGAGGTCTCTCTCGTTGATAACGCCACCACTGCTGCTGCTATTGTTCTTCAGAAAGTTGGAAGGTGTTTCTCGGAAGGGAAGTATAAGAAGGAAGATACTGTAGTGATGTTTCACTGTGCGTTTCAGAGTGTGAAGAAGTCGATTCAGGCTTATGTCTCTCGTGTGGGAGGTTCTACTGTTGAGGTTAGGTTACCTTTCCCTGTAAATTCGAACGAAGAGATTATCTCCAAGTTTAGAGAAGGACTAGAGAAAGGTAGAGCGAATGGTAGAACGGTTAGGTTAGCTATCATTGATCATATAACGTCGATGCCGTGTGTTTTGATGCCGGTACGAGAATTGGTTAAGATCTGCAGAGAGGAAGGTGTGGAGCAGGTTTTTGTTGATGCAGCTCATGCCATTGGTAGTGTTAAAGTTGATGTGAAAGAAATCGGAGCTGATTACTATGTGAGTAATCTGCATAAATGGTTCTTTTGTCCACCGTCTATCGCGTTTTTCTATTGTAAGAAACGTGGTTCTGAGTCTGATGTTCATCACCCTGTGGTGTCTCATGAGTTTGGAAATGGTTTGCCTATAGAAAGTGCCTGGATTGGGACTAGGGATTACAGTTCACAGCTTGTGGTTCCATCTGTGATGGAGTTTGTAAACAGGTTCGAGGGAGGGATGGAAGGGATAATGATGAAGAACCATGATGAAGCTGTTAGAATGGGTTTAATGCTGGCTGATGCTTGGGGAACGAATCTAGGGTCACCTCCAGAAATGTGTGTTGGGATGGTTATGATCGGTTTACCTTCAAAACTCTGTGTTGGAAGTGATGAAGATGCTATTAAGTTGCGGTCATATCTGCGGGTTCATTACTCAGTTGAGGTTCCAGTTTTTTATCTCGGATTGAGGGATGGAGAGGAAGGAGTGAAAGACAAAGACAGTGGACTAATTACTGCGTATGTTCGGATCTCTCATCAGGTCTATAACAAAACTGAGGATTATGAGAGATTGAGAGACGCAATAACAGAGTTAGTCAAGGATCAGATGACTTGTCAAAACCTTCCTGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009987 GO:0016054 GO:0016829 GO:0016846 GO:0019448 GO:0019450 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046439 GO:0071704 GO:0080146 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

454

Amino Acids

50.69

Weight (kDa)

6.0

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	89 - 273	1.4e-14	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	670
AccBSI	CCGCTC	1 cut(s)	16
AccII	CGCG	3 cut(s)	51, 192, 797
AciI	CCGC	5 cut(s)	8, 16, 49, 1141, 1153
AclWI	GGATC	2 cut(s)	1265, 1338
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	847
AfaI	GTAC	1 cut(s)	639
AfiI	CCNNNNNNNGG	1 cut(s)	897
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	238, 1101
AjiI	CACGTC	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	166, 890
AjuI	GAANNNNNNNTTGG	2 cut(s)	1056, 1088
AluBI	AGCT	7 cut(s)	153, 202, 593, 698, 743, 922, 1004
AluI	AGCT	7 cut(s)	153, 202, 593, 698, 743, 922, 1004
Alw26I	GTCTC	6 cut(s)	74, 248, 319, 469, 858, 1299
AlwI	GGATC	2 cut(s)	1265, 1338
Ama87I	CYCGRG	1 cut(s)	179
ApeKI	GCWGC	4 cut(s)	199, 341, 344, 695
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	4 cut(s)	92, 124, 1037, 1069
AsiGI	ACCGGT	1 cut(s)	125
AspLEI	GCGC	3 cut(s)	21, 53, 187
AsuHPI	GGTGA	4 cut(s)	38, 107, 833, 1047
AsuII	TTCGAA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	179
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BauI	CACGAG	1 cut(s)	468
BbvI	GCAGC	4 cut(s)	211, 328, 331, 707
BccI	CCATC	5 cut(s)	934, 940, 964, 1072, 1196
BceAI	ACGGC	1 cut(s)	604
BciT130I	CCWGG	2 cut(s)	168, 892
BclI	TGATCA	2 cut(s)	276, 601
BcoDI	GTCTC	6 cut(s)	74, 248, 319, 469, 858, 1299
BfaI	CTAG	3 cut(s)	554, 903, 1049
BfmI	CTRYAG	3 cut(s)	408, 658, 879
BfuAI	ACCTGC	1 cut(s)	670
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	5 cut(s)	17, 200, 342, 345, 696
BlsI	GCNGC	5 cut(s)	18, 201, 343, 346, 697
Bme1390I	CCNGG	2 cut(s)	168, 892
BmeT110I	CYCGRG	1 cut(s)	179
BmgBI	CACGTC	1 cut(s)	68
BmiI	GGNNCC	3 cut(s)	172, 930, 1176
BmrFI	CCNGG	2 cut(s)	168, 892
BmsI	GCATC	5 cut(s)	606, 621, 682, 1021, 1117
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
BpmI	CTGGAG	1 cut(s)	1044
Bpu14I	TTCGAA	1 cut(s)	518
BsaBI	GATNNNNATC	1 cut(s)	837
BsaI	GGTCTC	2 cut(s)	248, 319
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	897
Bse118I	RCCGGY	2 cut(s)	125, 634
Bse1I	ACTGG	1 cut(s)	1178
Bse3DI	GCAATG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	168, 892
BseGI	GGATG	3 cut(s)	975, 1083, 1207
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	1 cut(s)	897
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	4 cut(s)	96, 816, 1179, 1275
BseNI	ACTGG	1 cut(s)	1178
BseXI	GCAGC	4 cut(s)	211, 328, 331, 707
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	3 cut(s)	51, 192, 797
BshTI	ACCGGT	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	126, 635
BslFI	GGGAC	1 cut(s)	913
BslI	CCNNNNNNNGG	1 cut(s)	897
BsmAI	GTCTC	6 cut(s)	74, 248, 319, 469, 858, 1299
BsmBI	CGTCTC	2 cut(s)	74, 1299
BsmFI	GGGAC	1 cut(s)	913
Bso31I	GGTCTC	2 cut(s)	248, 319
BsoBI	CYCGRG	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	518
Bsp143I	GATC	6 cut(s)	276, 601, 654, 1086, 1257, 1330
BspACI	CCGC	5 cut(s)	8, 16, 49, 1141, 1153
BspCNI	CTCAG	4 cut(s)	97, 817, 1178, 1276
BspFNI	CGCG	3 cut(s)	51, 192, 797
BspHI	TCATGA	1 cut(s)	856
BspLI	GGNNCC	3 cut(s)	172, 930, 1176
BspMAI	CTGCAG	1 cut(s)	662
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	2 cut(s)	1265, 1338
BspT104I	TTCGAA	1 cut(s)	518
BspTNI	GGTCTC	2 cut(s)	248, 319
BsrBI	CCGCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	28
BsrFI	RCCGGY	2 cut(s)	125, 634
BsrI	ACTGG	1 cut(s)	1178
BssAI	RCCGGY	2 cut(s)	125, 634
BssMI	GATC	6 cut(s)	276, 601, 654, 1086, 1257, 1330
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	168, 892
Bst6I	CTCTTC	1 cut(s)	519
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	1026
BstDEI	CTNAG	4 cut(s)	105, 825, 1165, 1284
BstEII	GGTNACC	2 cut(s)	498, 1053
BstF5I	GGATG	3 cut(s)	975, 1083, 1207
BstFNI	CGCG	3 cut(s)	51, 192, 797
BstHHI	GCGC	3 cut(s)	21, 53, 187
BstKTI	GATC	6 cut(s)	279, 604, 657, 1089, 1260, 1333
BstMAI	GTCTC	6 cut(s)	74, 248, 319, 469, 858, 1299
BstMBI	GATC	6 cut(s)	276, 601, 654, 1086, 1257, 1330
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 168, 338, 701
BstNI	CCWGG	2 cut(s)	168, 892
BstPI	GGTNACC	2 cut(s)	498, 1053
BstSCI	CCNGG	2 cut(s)	166, 890
BstSFI	CTRYAG	3 cut(s)	408, 658, 879
BstUI	CGCG	3 cut(s)	51, 192, 797
BstV1I	GCAGC	4 cut(s)	211, 328, 331, 707
BstX2I	RGATCY	2 cut(s)	654, 1257
BstYI	RGATCY	2 cut(s)	654, 1257
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	975, 1083, 1207
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	4 cut(s)	286, 336, 421, 1237
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	1026
CciI	TCATGA	1 cut(s)	856
CfoI	GCGC	3 cut(s)	21, 53, 187
Cfr10I	RCCGGY	2 cut(s)	125, 634
CseI	GACGC	1 cut(s)	1316
Csp6I	GTAC	1 cut(s)	638
CspAI	ACCGGT	1 cut(s)	125
CspCI	CAANNNNNGTGG	4 cut(s)	176, 211, 1213, 1248
CviAII	CATG	3 cut(s)	701, 857, 995
CviQI	GTAC	1 cut(s)	638
DdeI	CTNAG	4 cut(s)	105, 825, 1165, 1284
DpnI	GATC	6 cut(s)	278, 603, 656, 1088, 1259, 1332
DpnII	GATC	6 cut(s)	276, 601, 654, 1086, 1257, 1330
DraIII	CACNNNGTG	1 cut(s)	847
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco31I	GGTCTC	2 cut(s)	248, 319
Eco32I	GATATC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	179
Eco91I	GGTNACC	2 cut(s)	498, 1053
EcoO65I	GGTNACC	2 cut(s)	498, 1053
EcoRII	CCWGG	2 cut(s)	166, 890
EcoRV	GATATC	1 cut(s)	97
Esp3I	CGTCTC	2 cut(s)	74, 1299
FaeI	CATG	3 cut(s)	704, 860, 998
FaqI	GGGAC	1 cut(s)	913
FatI	CATG	3 cut(s)	700, 856, 994
FauI	CCCGC	1 cut(s)	1146
FbaI	TGATCA	2 cut(s)	276, 601
Fnu4HI	GCNGC	5 cut(s)	17, 200, 342, 345, 696
FokI	GGATG	3 cut(s)	982, 1090, 1214
Fsp4HI	GCNGC	5 cut(s)	17, 200, 342, 345, 696
FspBI	CTAG	3 cut(s)	554, 903, 1049
GlaI	GCGC	3 cut(s)	20, 52, 186
GluI	GCNGC	5 cut(s)	17, 200, 342, 345, 696
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	1044
HapII	CCGG	2 cut(s)	126, 635
HgaI	GACGC	1 cut(s)	1316
HhaI	GCGC	3 cut(s)	21, 53, 187
Hin1II	CATG	3 cut(s)	704, 860, 998
Hin6I	GCGC	3 cut(s)	19, 51, 185
HinP1I	GCGC	3 cut(s)	19, 51, 185
HinfI	GANTC	8 cut(s)	29, 37, 89, 101, 138, 451, 827, 1045
HpaII	CCGG	2 cut(s)	126, 635
HphI	GGTGA	4 cut(s)	38, 107, 833, 1047
Hpy166II	GTNNAC	6 cut(s)	254, 785, 917, 952, 1094, 1235
Hpy188III	TCNNGA	4 cut(s)	179, 267, 857, 1061
Hpy8I	GTNNAC	6 cut(s)	254, 785, 917, 952, 1094, 1235
Hpy99I	CGWCG	2 cut(s)	252, 616
HpyAV	CCTTC	9 cut(s)	363, 377, 391, 542, 662, 968, 1107, 1205, 1361
HpyCH4IV	ACGT	3 cut(s)	67, 611, 817
HpyCH4V	TGCA	4 cut(s)	660, 695, 766, 1358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 168, 338, 701
HpyF3I	CTNAG	4 cut(s)	105, 825, 1165, 1284
HpySE526I	ACGT	3 cut(s)	67, 611, 817
Hsp92II	CATG	3 cut(s)	704, 860, 998
HspAI	GCGC	3 cut(s)	19, 51, 185
Ksp22I	TGATCA	2 cut(s)	276, 601
Kzo9I	GATC	6 cut(s)	276, 601, 654, 1086, 1257, 1330
LmnI	GCTCC	3 cut(s)	176, 676, 740
Lsp1109I	GCAGC	4 cut(s)	211, 328, 331, 707
LweI	GCATC	5 cut(s)	606, 621, 682, 1021, 1117
MaeI	CTAG	3 cut(s)	554, 903, 1049
MaeII	ACGT	3 cut(s)	67, 611, 817
MaeIII	GTNAC	4 cut(s)	38, 281, 498, 1053
MalI	GATC	6 cut(s)	278, 603, 656, 1088, 1259, 1332
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	6 cut(s)	276, 601, 654, 1086, 1257, 1330
MboII	GAAGA	7 cut(s)	70, 347, 413, 454, 536, 1000, 1136
MflI	RGATCY	2 cut(s)	654, 1257
MluCI	AATT	3 cut(s)	514, 644, 1239
MlyI	GAGTC	4 cut(s)	46, 95, 98, 836
MmeI	TCCRAC	2 cut(s)	346, 1093
MseI	TTAA	5 cut(s)	83, 651, 717, 1019, 1134
MspI	CCGG	2 cut(s)	126, 635
MspR9I	CCNGG	2 cut(s)	168, 892
MvaI	CCWGG	2 cut(s)	168, 892
MvnI	CGCG	3 cut(s)	51, 192, 797
MwoI	GCNNNNNNNGC	4 cut(s)	159, 168, 338, 701
NdeII	GATC	6 cut(s)	276, 601, 654, 1086, 1257, 1330
NlaIII	CATG	3 cut(s)	704, 860, 998
NlaIV	GGNNCC	3 cut(s)	172, 930, 1176
NmuCI	GTSAC	3 cut(s)	38, 281, 1053
NspV	TTCGAA	1 cut(s)	518
PaeR7I	CTCGAG	1 cut(s)	179
PagI	TCATGA	1 cut(s)	856
PcsI	WCGNNNNNNNCGW	2 cut(s)	211, 617
PfeI	GAWTC	4 cut(s)	29, 138, 451, 1045
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	18, 201, 343, 346, 697
PleI	GAGTC	4 cut(s)	45, 95, 97, 835
PpsI	GAGTC	4 cut(s)	45, 95, 97, 835
Psp6I	CCWGG	2 cut(s)	166, 890
PspEI	GGTNACC	2 cut(s)	498, 1053
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	166, 890
PspN4I	GGNNCC	3 cut(s)	172, 930, 1176
PstI	CTGCAG	1 cut(s)	662
PsuI	RGATCY	2 cut(s)	654, 1257
RsaI	GTAC	1 cut(s)	639
RsaNI	GTAC	1 cut(s)	638
SaqAI	TTAA	5 cut(s)	83, 651, 717, 1019, 1134
SatI	GCNGC	5 cut(s)	17, 200, 342, 345, 696
Sau3AI	GATC	6 cut(s)	276, 601, 654, 1086, 1257, 1330
SchI	GAGTC	4 cut(s)	46, 95, 98, 836
ScrFI	CCNGG	2 cut(s)	168, 892
SfaNI	GCATC	5 cut(s)	606, 621, 682, 1021, 1117
SfcI	CTRYAG	3 cut(s)	408, 658, 879
Sfr274I	CTCGAG	1 cut(s)	179
SfuI	TTCGAA	1 cut(s)	518
SlaI	CTCGAG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	514, 644, 1239
SsiI	CCGC	5 cut(s)	8, 16, 49, 1141, 1153
SspMI	CTAG	3 cut(s)	554, 903, 1049
StyD4I	CCNGG	2 cut(s)	166, 890
TaiI	ACGT	3 cut(s)	70, 614, 820
TaqI	TCGA	8 cut(s)	32, 99, 180, 268, 449, 518, 614, 960
TasI	AATT	3 cut(s)	514, 644, 1239
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	4 cut(s)	29, 138, 451, 1045
Tru1I	TTAA	5 cut(s)	83, 651, 717, 1019, 1134
Tru9I	TTAA	5 cut(s)	83, 651, 717, 1019, 1134
TscAI	CASTG	4 cut(s)	286, 343, 428, 1237
TseFI	GTSAC	3 cut(s)	38, 281, 1053
TseI	GCWGC	4 cut(s)	199, 341, 344, 695
Tsp45I	GTSAC	3 cut(s)	38, 281, 1053
TspDTI	ATGAA	5 cut(s)	827, 1001, 1014, 1137, 1148
TspGWI	ACGGA	3 cut(s)	163, 203, 236
TspRI	CASTG	4 cut(s)	286, 343, 428, 1237
XapI	RAATTY	1 cut(s)	514
XhoI	CTCGAG	1 cut(s)	179
XspI	CTAG	3 cut(s)	554, 903, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.