Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Reverse (-)

41623580 .. 41625486

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG328800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAGTGAATTTCGGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAAGAGTCAGATTAGCGATGATTGATCATGTTACATCCATGCCATATGTTGTACTTCCAGTTAAGAAATTGGTTAAAGTTTGCAGGGAAGAAGGTGTTGATCTAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGACATGCAAGAAATTGGAGCAGATTTTTACACTAGTAATTTGCACAAGTGGTTCTTCTCCCCTGCTTCGGTTGCATTTTTATATTGTAGGAAGTCAGTCACACATTTAGAATTGCATCATCCTATGGTGTCTCATGACTATGATAAAGGGTTGGCTATTGAAAGTAGTTGGATAGGGACTAGGGATTATAGTCCATCTTTAGTGGTTCCTTCAGTTGTGGAGTTCACAAATAGGTTTGAAGGCGGTATTAAGGGAATCAAAATGATGAATCATGATGCTGTTGTTGAGATGGGTAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCGCCAGATATGTGTGCAAGCATGATCATGGTGGGAATACCGGCTTGTTTGGAGGTTTCAAGTGATGATGATGCTTTGAAGTTAAGGACACATTTAAGGGAGAAATTTGGTGTTGAAGTCCACATATTACCAGATGCCAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

223

Amino Acids

24.77

Weight (kDa)

6.36

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	15 - 97	1.6e-11	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	435, 527
AcsI	RAATTY	2 cut(s)	8, 629
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	259, 519
AgsI	TTSAA	5 cut(s)	353, 431, 585, 604, 641
AhlI	ACTAGT	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	327, 528
ApoI	RAATTY	2 cut(s)	8, 629
AsuHPI	GGTGA	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	169
BccI	CCATC	4 cut(s)	10, 155, 394, 475
BclI	TGATCA	2 cut(s)	70, 549
BcoDI	GTCTC	2 cut(s)	327, 528
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	4 cut(s)	39, 149, 225, 372
BmiI	GGNNCC	2 cut(s)	399, 511
BmsI	GCATC	4 cut(s)	316, 457, 586, 649
BsaI	GGTCTC	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 519
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	1 cut(s)	104
BseGI	GGATG	3 cut(s)	21, 80, 310
BseLI	CCNNNNNNNGG	2 cut(s)	259, 519
BseNI	ACTGG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	259, 519
BsmAI	GTCTC	2 cut(s)	327, 528
BsmFI	GGGAC	1 cut(s)	382
Bso31I	GGTCTC	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	70, 145, 549
BspACI	CCGC	2 cut(s)	435, 527
BspHI	TCATGA	2 cut(s)	325, 463
BspLI	GGNNCC	2 cut(s)	399, 511
BspTNI	GGTCTC	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	565
BssMI	GATC	3 cut(s)	70, 145, 549
Bst6I	CTCTTC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	21, 80, 310
BstKTI	GATC	3 cut(s)	73, 148, 552
BstMAI	GTCTC	2 cut(s)	327, 528
BstMBI	GATC	3 cut(s)	70, 145, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	21, 80, 310
Cac8I	GCNNGC	1 cut(s)	544
CciI	TCATGA	2 cut(s)	325, 463
Cfr10I	RCCGGY	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	9 cut(s)	74, 85, 170, 196, 326, 464, 547, 553, 669
CviJI	RGCY	6 cut(s)	20, 38, 167, 347, 503, 569
CviKI_1	RGCY	6 cut(s)	20, 38, 167, 347, 503, 569
CviQI	GTAC	1 cut(s)	98
DpnI	GATC	3 cut(s)	72, 147, 551
DpnII	GATC	3 cut(s)	70, 145, 549
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	9 cut(s)	77, 88, 173, 199, 329, 467, 550, 556, 672
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	9 cut(s)	73, 84, 169, 195, 325, 463, 546, 552, 668
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	2 cut(s)	70, 549
FokI	GGATG	3 cut(s)	28, 67, 297
FriOI	GRGCYC	1 cut(s)	169
FspBI	CTAG	4 cut(s)	39, 149, 225, 372
HapII	CCGG	1 cut(s)	566
Hin1II	CATG	9 cut(s)	77, 88, 173, 199, 329, 467, 550, 556, 672
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	51, 447, 460
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	193, 417, 646
Hpy188I	TCNGA	2 cut(s)	15, 56
Hpy188III	TCNNGA	2 cut(s)	326, 464
Hpy8I	GTNNAC	3 cut(s)	193, 417, 646
HpyAV	CCTTC	4 cut(s)	22, 131, 411, 425
HpyCH4V	TGCA	6 cut(s)	129, 199, 235, 266, 307, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
Hsp92II	CATG	9 cut(s)	77, 88, 173, 199, 329, 467, 550, 556, 672
Ksp22I	TGATCA	2 cut(s)	70, 549
Kzo9I	GATC	3 cut(s)	70, 145, 549
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	5 cut(s)	115, 117, 267, 543, 579
LweI	GCATC	4 cut(s)	316, 457, 586, 649
MaeI	CTAG	4 cut(s)	39, 149, 225, 372
MaeIII	GTNAC	2 cut(s)	76, 289
MalI	GATC	3 cut(s)	72, 147, 551
MboI	GATC	3 cut(s)	70, 145, 549
MboII	GAAGA	3 cut(s)	60, 146, 238
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	6 cut(s)	8, 113, 204, 229, 302, 629
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	1 cut(s)	571
MseI	TTAA	5 cut(s)	108, 120, 441, 608, 620
MslI	CAYNNNNRTG	2 cut(s)	330, 551
MspI	CCGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	70, 145, 549
NlaIII	CATG	9 cut(s)	77, 88, 173, 199, 329, 467, 550, 556, 672
NlaIV	GGNNCC	2 cut(s)	399, 511
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	199
PagI	TCATGA	2 cut(s)	325, 463
PfeI	GAWTC	2 cut(s)	447, 460
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	399, 511
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	2 cut(s)	330, 551
SaqAI	TTAA	5 cut(s)	108, 120, 441, 608, 620
Sau3AI	GATC	3 cut(s)	70, 145, 549
SchI	GAGTC	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	3 cut(s)	142, 428, 582
SfaNI	GCATC	4 cut(s)	316, 457, 586, 649
SmiMI	CAYNNNNRTG	2 cut(s)	330, 551
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	6 cut(s)	8, 113, 204, 229, 302, 629
SsiI	CCGC	2 cut(s)	435, 527
SspMI	CTAG	4 cut(s)	39, 149, 225, 372
TasI	AATT	6 cut(s)	8, 113, 204, 229, 302, 629
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	447, 460
Tru1I	TTAA	5 cut(s)	108, 120, 441, 608, 620
Tru9I	TTAA	5 cut(s)	108, 120, 441, 608, 620
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	145, 473
XapI	RAATTY	2 cut(s)	8, 629
XceI	RCATGY	1 cut(s)	199
XspI	CTAG	4 cut(s)	39, 149, 225, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.