Rh3DG091400

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002899
Physical Location & Seq
Reverse (-)
7049285 .. 7050031
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG091400.1

Sequence Viewer

Length: 747 bp
ATGCCATCTGTTGTACTTCCAGTTAAGAAATTGGTTAAAGTTTGCAGGGAAGAAGGTGTTGATCAAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGACATGCAAGAAATTGGAGCAGATTTTTACACTAGTAATTTGCACAAGTGGTTCTTCTGCCCTGCTTCGGTTGCATTTTTATATTGTAGGAAGTCAGTCACACATTTAGAATTGCATCATCCTATGGTGTCTCATGACTATGGTAAAGGGTTGGCTATTGAAAGTAGTTGGATAGGGACTAGGGATTATAGTCCATCTTTAGTGGTTCCTTCAGTTGCGGAGTTCACAAATAGGTTTGAAGGCGGTATTGAGGGAATCAAAAGGAGGAACCATGATGCTGTTGTTGAGATGGGTAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCACCAGATATGTGTGCGAGCATGATCATGGTCGGACTACCGACTTGTTTGGGGATTTCAAGTAATGATGATGCTTTGAAGTTAAGGACACATCTACGGGAGCAATTTGGTGTTGAAGTCCCAATATATTACCAGATGCCGAAACATGAAGAGGTTGCAACAACAACAGGCTATGCTCGAATTTCTTATCAAGTCTACAACAAAATTGATGACTATTATAAGTTCAGAGATGCAATTAATCAACTTGTTTGTGATGGTTTCACCTGTGCTCAATCTTTAGGTAAATATGGTCTGCCTTCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

248

Amino Acids

27.59

Weight (kDa)

6.13

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 4 - 70 4.7e-09 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AccI GTMKAC 1 cut(s) 636
AciI CCGC 2 cut(s) 326, 351
AcsI RAATTY 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 175, 435
AgsI TTSAA 5 cut(s) 269, 347, 501, 520, 557
AhlI ACTAGT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 712
Alw26I GTCTC 2 cut(s) 243, 444
ApoI RAATTY 1 cut(s) 621
AseI ATTAAT 1 cut(s) 678
AsuHPI GGTGA 1 cut(s) 694
BanII GRGCYC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 712
BccI CCATC 5 cut(s) 13, 71, 310, 391, 689
BclI TGATCA 2 cut(s) 61, 465
BcoDI GTCTC 2 cut(s) 243, 444
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 2 cut(s) 141, 288
BmiI GGNNCC 3 cut(s) 315, 377, 427
BmsI GCATC 5 cut(s) 232, 373, 502, 567, 661
BsaI GGTCTC 1 cut(s) 444
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 435
Bse1I ACTGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 226, 740
BseLI CCNNNNNNNGG 2 cut(s) 175, 435
BseNI ACTGG 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 712
BslFI GGGAC 2 cut(s) 298, 545
BslI CCNNNNNNNGG 2 cut(s) 175, 435
BsmAI GTCTC 2 cut(s) 243, 444
BsmFI GGGAC 2 cut(s) 298, 545
Bso31I GGTCTC 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 85, 712
Bsp143I GATC 2 cut(s) 61, 465
BspACI CCGC 2 cut(s) 326, 351
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 315, 377, 427
BspTNI GGTCTC 1 cut(s) 444
BsrI ACTGG 1 cut(s) 20
BssMI GATC 2 cut(s) 61, 465
Bst6I CTCTTC 1 cut(s) 585
BstC8I GCNNGC 1 cut(s) 460
BstF5I GGATG 2 cut(s) 226, 740
BstKTI GATC 2 cut(s) 64, 468
BstMAI GTCTC 2 cut(s) 243, 444
BstMBI GATC 2 cut(s) 61, 465
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 115
BtsCI GGATG 2 cut(s) 226, 740
Cac8I GCNNGC 1 cut(s) 460
CciI TCATGA 1 cut(s) 241
Csp6I GTAC 1 cut(s) 14
CviAII CATG 7 cut(s) 86, 112, 242, 380, 463, 469, 587
CviJI RGCY 4 cut(s) 83, 263, 419, 612
CviKI_1 RGCY 4 cut(s) 83, 263, 419, 612
CviQI GTAC 1 cut(s) 14
DpnI GATC 2 cut(s) 63, 467
DpnII GATC 2 cut(s) 61, 465
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 7 cut(s) 89, 115, 245, 383, 466, 472, 590
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 2 cut(s) 298, 545
FatI CATG 7 cut(s) 85, 111, 241, 379, 462, 468, 586
FbaI TGATCA 2 cut(s) 61, 465
FblI GTMKAC 1 cut(s) 636
FokI GGATG 2 cut(s) 213, 727
FriOI GRGCYC 1 cut(s) 85
FspBI CTAG 2 cut(s) 141, 288
Hin1II CATG 7 cut(s) 89, 115, 245, 383, 466, 472, 590
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 1 cut(s) 363
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 3 cut(s) 109, 333, 637
Hpy188I TCNGA 2 cut(s) 476, 668
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 3 cut(s) 109, 333, 637
HpyAV CCTTC 4 cut(s) 47, 327, 341, 747
HpyCH4V TGCA 7 cut(s) 45, 115, 151, 182, 223, 599, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
Hsp92II CATG 7 cut(s) 89, 115, 245, 383, 466, 472, 590
Ksp22I TGATCA 2 cut(s) 61, 465
Kzo9I GATC 2 cut(s) 61, 465
LmnI GCTCC 2 cut(s) 125, 541
LpnPI CCDG 7 cut(s) 31, 33, 183, 459, 587, 594, 718
LweI GCATC 5 cut(s) 232, 373, 502, 567, 661
MaeI CTAG 2 cut(s) 141, 288
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 63, 467
MboI GATC 2 cut(s) 61, 465
MboII GAAGA 3 cut(s) 62, 154, 602
MhlI GDGCHC 2 cut(s) 85, 712
MluCI AATT 8 cut(s) 29, 120, 145, 218, 545, 621, 645, 675
MmeI TCCRAC 2 cut(s) 257, 454
MnlI CCTC 3 cut(s) 352, 366, 586
MseI TTAA 4 cut(s) 24, 36, 524, 678
MslI CAYNNNNRTG 2 cut(s) 246, 467
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 61, 465
NlaIII CATG 7 cut(s) 89, 115, 245, 383, 466, 472, 590
NlaIV GGNNCC 3 cut(s) 315, 377, 427
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 115
PagI TCATGA 1 cut(s) 241
PfeI GAWTC 1 cut(s) 363
PshBI ATTAAT 1 cut(s) 678
PsiI TTATAA 1 cut(s) 660
PspN4I GGNNCC 3 cut(s) 315, 377, 427
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 246, 467
SaqAI TTAA 4 cut(s) 24, 36, 524, 678
Sau3AI GATC 2 cut(s) 61, 465
SduI GDGCHC 2 cut(s) 85, 712
SetI ASST 5 cut(s) 58, 344, 597, 707, 724
SfaNI GCATC 5 cut(s) 232, 373, 502, 567, 661
SmiMI CAYNNNNRTG 2 cut(s) 246, 467
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 8 cut(s) 29, 120, 145, 218, 545, 621, 645, 675
SsiI CCGC 2 cut(s) 326, 351
SspMI CTAG 2 cut(s) 141, 288
TaqI TCGA 1 cut(s) 619
TasI AATT 8 cut(s) 29, 120, 145, 218, 545, 621, 645, 675
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 4 cut(s) 24, 36, 524, 678
Tru9I TTAA 4 cut(s) 24, 36, 524, 678
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 61, 603, 729
VspI ATTAAT 1 cut(s) 678
XapI RAATTY 1 cut(s) 621
XceI RCATGY 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 2 cut(s) 141, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.