Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Forward (+)

27559309 .. 27561469

Gene Structure 2161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGACTGGGAATGCAGGATCATCTACGCAAGAAAACCACTTTCGACAACGGCTAAGGGTCATGGCCGAGAAGATTGTTATATTTTGCCGTTACTACGTTCCACTTATTGTTCTTCTTCCTTATCGAACCCTCCAATTCTTCTACCAAATCAAAACCCAAGTTCCCATTGAGCCAAAACACTCTTCTTCCTTCATCACAGACTCCGAAATCCAATCCGAATTTGCTCACCATGCTCCTGGTGTTGCCATGATGAACAATGGCAGCTTTGGTTGCTGCCCTGCTTCTGTCATCTCTGCCTTGCATCAATGGCAGCTCAAAATGTTCCGCCAGCCGAGCCATTTCTTATTGAATGAGCTCAAGAACAGGATACTTGAATCAAGAACCATAATTAAAGACCATATCAACGCAGAAGATGTGGATGAAGTCTCCATTGTAGACAACATCTCCACTGCTGCTGCCATAGTCCTGCAGCAAACAGCATGGGCCTTTGCTGAAGGGAAATTCAACAAAGGGGATGCTGTCATTATGTTTAGCTGCACTTACGGTGCGGTGAAGAACTCAATCGAGGCCTACTTTTCACGTGCTGGTGGGTCCGTTATCGAAGTTCCATTTAACTTTCCATTGAATTCCAATGAAGAAATCATAAGTGAATTTAGGAAAGCATTGGAGAGAGAAAAGGGTAATGGTAGGAGAGTGAGATTGGCTGTGATTGATCATGTTACATGTGTGCCAACTGTTGTAATGCCAGTTAAGCAATTGGTTAAAATCTGTAGGGATGAAGGTGTTGAACAAGTGTTCATAGATGCAGCTCATGCTGTTGGGAGCGTAGATGTTGATATGCAAGAAATTGGGGCAGATTTTTATGCTAGTACTTTGTATAAGTGGTTCTTCTGCCCGCCTGTTGTTTCATTTCTGTATTGTAGGAAATCAGCTACACATTCAGATTTGGAATTGCATCACCCTATTGTGTCTCATAGGTATGGTAAGGGGTTGGCTGAAGAAAGTTTTTGGGTTGGGACAAGGGATTATAGTCCATATCTGGTGCTTCCTTCAGTTATGGAGTTCGTTAACAGGTTCGAAGGCGGTCTTAAGGGAATCATAAAAAGGAATCATGATGCTGTTGTTGAGATGGGGAAGATGTTGGCAGAAGCTTGGGGAACCAATCTAGGGTGTCCTCCTGATATGTGCGCTAGCATGATCATGGTAGGGTTACCGGCTTGTTTGGGGATTTCAAGTGATGATGATGCTACGAAGTTAAGGCCACATTTATGTGATAAATTTGGTGTTGAAGTCAGAATACATTATCAAGCTCCCAAAGATGGAGAGGTTGGATCAACGACGGGGTATGTTCGAATTTGTCATCAGATTTACAACAAAGTTGATGACTATTACAAGCTCAGAGATGCAGTTAATCAACTAGTTCGTGATGGATTCACTTGCGCTCTTGAGGTATGTATATGCTCTGCCTTCATCCAGTTTATTGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

497

Amino Acids

55.61

Weight (kDa)

6.29

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	4 cut(s)	325, 548, 896, 1083
AclWI	GGATC	2 cut(s)	25, 1339
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	6 cut(s)	218, 500, 625, 650, 1277, 1353
AcuI	CTGAAG	3 cut(s)	513, 1017, 1035
AcvI	CACGTG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	871
AfiI	CCNNNNNNNGG	2 cut(s)	1167, 1319
AflII	CTTAAG	1 cut(s)	1088
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	7 cut(s)	349, 374, 505, 625, 788, 1233, 1289
AhlI	ACTAGT	1 cut(s)	1417
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	9 cut(s)	264, 313, 355, 534, 809, 932, 1151, 1310, 1396
AluI	AGCT	9 cut(s)	264, 313, 355, 534, 809, 932, 1151, 1310, 1396
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	430, 975
AlwI	GGATC	2 cut(s)	25, 1339
AoxI	GGCC	4 cut(s)	63, 483, 567, 1259
ApeKI	GCWGC	8 cut(s)	261, 273, 310, 452, 455, 469, 534, 806
ApoI	RAATTY	6 cut(s)	218, 500, 625, 650, 1277, 1353
AspLEI	GCGC	2 cut(s)	1190, 1442
AspS9I	GGNCC	2 cut(s)	483, 591
AsuHPI	GGTGA	3 cut(s)	218, 562, 950
AsuII	TTCGAA	2 cut(s)	1077, 1351
AsuNHI	GCTAGC	1 cut(s)	1190
AvaII	GGWCC	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	357
BarI	GAAGNNNNNNTAC	2 cut(s)	1281, 1313
BbrPI	CACGTG	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	8 cut(s)	260, 273, 322, 439, 442, 481, 521, 818
BccI	CCATC	3 cut(s)	1123, 1313, 1421
BceAI	ACGGC	2 cut(s)	65, 72
BciT130I	CCWGG	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	2 cut(s)	712, 1197
BcoDI	GTCTC	2 cut(s)	430, 975
BcuI	ACTAGT	1 cut(s)	1417
BfaI	CTAG	4 cut(s)	867, 1166, 1191, 1418
BfmI	CTRYAG	2 cut(s)	467, 769
BfrI	CTTAAG	1 cut(s)	1088
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	8 cut(s)	262, 274, 311, 453, 456, 470, 535, 807
BlsI	GCNGC	8 cut(s)	263, 275, 312, 454, 457, 471, 536, 808
BmcAI	AGTACT	1 cut(s)	871
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	591
BmgT120I	GGNCC	2 cut(s)	483, 591
BmiI	GGNNCC	2 cut(s)	592, 1159
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	15
BmsI	GCATC	7 cut(s)	310, 505, 793, 964, 1105, 1234, 1393
BmtI	GCTAGC	1 cut(s)	1194
BmuI	ACTGGG	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	2 cut(s)	1077, 1351
BpuEI	CTTGAG	2 cut(s)	341, 1466
BsaAI	YACGTR	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	1167, 1319
Bse118I	RCCGGY	1 cut(s)	1213
Bse1I	ACTGG	3 cut(s)	10, 746, 1474
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	4 cut(s)	424, 520, 781, 1470
BseLI	CCNNNNNNNGG	2 cut(s)	1167, 1319
BseMII	CTCAG	1 cut(s)	1411
BseNI	ACTGG	3 cut(s)	10, 746, 1474
BseXI	GCAGC	8 cut(s)	260, 273, 322, 439, 442, 481, 521, 818
BsgI	GTGCAG	1 cut(s)	520
BshFI	GGCC	4 cut(s)	65, 485, 569, 1261
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	1214
BslFI	GGGAC	1 cut(s)	1030
BslI	CCNNNNNNNGG	2 cut(s)	1167, 1319
BsmAI	GTCTC	2 cut(s)	430, 975
BsmFI	GGGAC	1 cut(s)	1030
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	4 cut(s)	65, 485, 569, 1261
Bsp119I	TTCGAA	2 cut(s)	1077, 1351
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	17, 712, 1197, 1331
BspACI	CCGC	4 cut(s)	325, 548, 896, 1083
BspANI	GGCC	4 cut(s)	65, 485, 569, 1261
BspCNI	CTCAG	1 cut(s)	1410
BspHI	TCATGA	1 cut(s)	1111
BspLI	GGNNCC	2 cut(s)	592, 1159
BspMAI	CTGCAG	1 cut(s)	471
BspOI	GCTAGC	1 cut(s)	1194
BspPI	GGATC	2 cut(s)	25, 1339
BspT104I	TTCGAA	2 cut(s)	1077, 1351
BspTI	CTTAAG	1 cut(s)	1088
BsrFI	RCCGGY	1 cut(s)	1213
BsrI	ACTGG	3 cut(s)	10, 746, 1474
BssAI	RCCGGY	1 cut(s)	1213
BssMI	GATC	4 cut(s)	17, 712, 1197, 1331
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	545, 736
Bst6I	CTCTTC	1 cut(s)	187
BstAFI	CTTAAG	1 cut(s)	1088
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstBAI	YACGTR	1 cut(s)	581
BstBI	TTCGAA	2 cut(s)	1077, 1351
BstC8I	GCNNGC	3 cut(s)	329, 896, 1192
BstDEI	CTNAG	2 cut(s)	53, 1397
BstEII	GGTNACC	1 cut(s)	1209
BstF5I	GGATG	4 cut(s)	424, 520, 781, 1470
BstHHI	GCGC	2 cut(s)	1190, 1442
BstKTI	GATC	4 cut(s)	20, 715, 1200, 1334
BstMAI	GTCTC	2 cut(s)	430, 975
BstMBI	GATC	4 cut(s)	17, 712, 1197, 1331
BstMWI	GCNNNNNNNGC	6 cut(s)	230, 270, 307, 333, 751, 812
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	726
BstPI	GGTNACC	1 cut(s)	1209
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	2 cut(s)	467, 769
BstV1I	GCAGC	8 cut(s)	260, 273, 322, 439, 442, 481, 521, 818
BstXI	CCANNNNNNTGG	2 cut(s)	236, 1481
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	65, 485, 569, 1261
BtsCI	GGATG	4 cut(s)	424, 520, 781, 1470
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	329, 896, 1192
CciI	TCATGA	1 cut(s)	1111
CfoI	GCGC	2 cut(s)	1190, 1442
Cfr10I	RCCGGY	1 cut(s)	1213
Cfr13I	GGNCC	2 cut(s)	483, 591
Csp6I	GTAC	1 cut(s)	870
CviQI	GTAC	1 cut(s)	870
DdeI	CTNAG	2 cut(s)	53, 1397
DpnI	GATC	4 cut(s)	19, 714, 1199, 1333
DpnII	GATC	4 cut(s)	17, 712, 1197, 1331
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	355
Eco147I	AGGCCT	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	513, 1017, 1035
Eco72I	CACGTG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	1209
EcoICRI	GAGCTC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	1209
EcoRI	GAATTC	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	357
FalI	AAGNNNNNCTT	4 cut(s)	872, 904, 1071, 1103
FaqI	GGGAC	1 cut(s)	1030
FauI	CCCGC	1 cut(s)	903
FbaI	TGATCA	2 cut(s)	712, 1197
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	8 cut(s)	262, 274, 311, 453, 456, 470, 535, 807
FokI	GGATG	4 cut(s)	431, 527, 788, 1457
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	8 cut(s)	262, 274, 311, 453, 456, 470, 535, 807
FspBI	CTAG	4 cut(s)	867, 1166, 1191, 1418
GlaI	GCGC	2 cut(s)	1189, 1441
GluI	GCNGC	8 cut(s)	262, 274, 311, 453, 456, 470, 535, 807
HaeIII	GGCC	4 cut(s)	65, 485, 569, 1261
HapII	CCGG	1 cut(s)	1214
HhaI	GCGC	2 cut(s)	1190, 1442
Hin6I	GCGC	2 cut(s)	1188, 1440
HinP1I	GCGC	2 cut(s)	1188, 1440
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HindIII	AAGCTT	1 cut(s)	1149
HinfI	GANTC	5 cut(s)	200, 374, 1095, 1108, 1431
HpaI	GTTAAC	1 cut(s)	1069
HpaII	CCGG	1 cut(s)	1214
HphI	GGTGA	3 cut(s)	218, 562, 950
Hpy166II	GTNNAC	2 cut(s)	436, 1069
Hpy188I	TCNGA	6 cut(s)	205, 217, 943, 1295, 1365, 1400
Hpy188III	TCNNGA	6 cut(s)	358, 378, 1112, 1178, 1424, 1445
Hpy8I	GTNNAC	2 cut(s)	436, 1069
Hpy99I	CGWCG	1 cut(s)	1342
HpyAV	CCTTC	6 cut(s)	199, 488, 773, 1059, 1073, 1477
HpyCH4III	ACNGT	2 cut(s)	545, 736
HpyCH4IV	ACGT	2 cut(s)	96, 580
HpyCH4V	TGCA	8 cut(s)	14, 301, 469, 537, 806, 841, 955, 1406
HpyF10VI	GCNNNNNNNGC	6 cut(s)	230, 270, 307, 333, 751, 812
HpyF3I	CTNAG	2 cut(s)	53, 1397
HpySE526I	ACGT	2 cut(s)	96, 580
HspAI	GCGC	2 cut(s)	1188, 1440
Ksp22I	TGATCA	2 cut(s)	712, 1197
KspAI	GTTAAC	1 cut(s)	1069
Kzo9I	GATC	4 cut(s)	17, 712, 1197, 1331
LmnI	GCTCC	3 cut(s)	238, 822, 1315
Lsp1109I	GCAGC	8 cut(s)	260, 273, 322, 439, 442, 481, 521, 818
LweI	GCATC	7 cut(s)	310, 505, 793, 964, 1105, 1234, 1393
MaeI	CTAG	4 cut(s)	867, 1166, 1191, 1418
MaeII	ACGT	2 cut(s)	96, 580
MaeIII	GTNAC	3 cut(s)	89, 718, 1209
MalI	GATC	4 cut(s)	19, 714, 1199, 1333
MboI	GATC	4 cut(s)	17, 712, 1197, 1331
MfeI	CAATTG	1 cut(s)	755
MhlI	GDGCHC	1 cut(s)	357
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	1309
MnlI	CCTC	5 cut(s)	140, 559, 1185, 1318, 1441
MseI	TTAA	8 cut(s)	390, 612, 750, 762, 1068, 1089, 1256, 1410
MslI	CAYNNNNRTG	4 cut(s)	978, 1199, 1267, 1269
MspCI	CTTAAG	1 cut(s)	1088
MspI	CCGG	1 cut(s)	1214
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	755
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	6 cut(s)	230, 270, 307, 333, 751, 812
NdeII	GATC	4 cut(s)	17, 712, 1197, 1331
NheI	GCTAGC	1 cut(s)	1190
NlaIV	GGNNCC	2 cut(s)	592, 1159
NmeAIII	GCCGAG	2 cut(s)	91, 357
NspI	RCATGY	1 cut(s)	726
NspV	TTCGAA	2 cut(s)	1077, 1351
PagI	TCATGA	1 cut(s)	1111
PceI	AGGCCT	1 cut(s)	569
PciI	ACATGT	1 cut(s)	722
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	4 cut(s)	374, 1095, 1108, 1431
PkrI	GCNGC	8 cut(s)	263, 275, 312, 454, 457, 471, 536, 808
PleI	GAGTC	1 cut(s)	194
PmaCI	CACGTG	1 cut(s)	581
PmlI	CACGTG	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	581
PscI	ACATGT	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	235
PspCI	CACGTG	1 cut(s)	581
PspEI	GGTNACC	1 cut(s)	1209
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	592, 1159
PspPI	GGNCC	2 cut(s)	483, 591
PsrI	GAACNNNNNNTAC	2 cut(s)	869, 901
PstI	CTGCAG	1 cut(s)	471
RsaI	GTAC	1 cut(s)	871
RsaNI	GTAC	1 cut(s)	870
RseI	CAYNNNNRTG	4 cut(s)	978, 1199, 1267, 1269
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	8 cut(s)	390, 612, 750, 762, 1068, 1089, 1256, 1410
SatI	GCNGC	8 cut(s)	262, 274, 311, 453, 456, 470, 535, 807
Sau3AI	GATC	4 cut(s)	17, 712, 1197, 1331
Sau96I	GGNCC	2 cut(s)	483, 591
ScaI	AGTACT	1 cut(s)	871
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	7 cut(s)	310, 505, 793, 964, 1105, 1234, 1393
SfcI	CTRYAG	2 cut(s)	467, 769
SfuI	TTCGAA	2 cut(s)	1077, 1351
SinI	GGWCC	1 cut(s)	591
SmiMI	CAYNNNNRTG	4 cut(s)	978, 1199, 1267, 1269
SmlI	CTYRAG	3 cut(s)	356, 1088, 1445
SmoI	CTYRAG	3 cut(s)	356, 1088, 1445
SpeI	ACTAGT	1 cut(s)	1417
SseBI	AGGCCT	1 cut(s)	569
SsiI	CCGC	4 cut(s)	325, 548, 896, 1083
SspMI	CTAG	4 cut(s)	867, 1166, 1191, 1418
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	569
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	545, 736
TaiI	ACGT	2 cut(s)	99, 583
TaqI	TCGA	6 cut(s)	43, 124, 564, 600, 1077, 1351
TatI	WGTACW	1 cut(s)	869
TfiI	GAWTC	4 cut(s)	374, 1095, 1108, 1431
Tru1I	TTAA	8 cut(s)	390, 612, 750, 762, 1068, 1089, 1256, 1410
Tru9I	TTAA	8 cut(s)	390, 612, 750, 762, 1068, 1089, 1256, 1410
TscAI	CASTG	1 cut(s)	454
TseI	GCWGC	8 cut(s)	261, 273, 310, 452, 455, 469, 534, 806
TspDTI	ATGAA	8 cut(s)	181, 266, 435, 648, 787, 792, 897, 1459
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	1088
VpaK11BI	GGWCC	1 cut(s)	591
XapI	RAATTY	6 cut(s)	218, 500, 625, 650, 1277, 1353
XceI	RCATGY	1 cut(s)	726
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	4 cut(s)	867, 1166, 1191, 1418
ZrmI	AGTACT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.