Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Forward (+)

27562146 .. 27563639

Gene Structure 1494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G305100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGCTAAAAAGATTATTATGTTTTGCCGCCACTATGTTCCACCTATTCTTCTCCTTCCTTATCAAACCTTCCAATTCCTCTACCCCAAGCTTTCATTTCAAGTCTCAAGGGCCTCTAACCACCATTTCCACAACCTCAAAGCTGATGAAATCCAAACCCATGTTCCCATTGAGACAAAACTCTCTTCTTCCTTCATCACAGACTCCGAAATCCAATCTGAATTTGCTCACCATGCTCCTGGTGTTGCCAGGATGAACAATGGCAGCTTTGGTTGCTGCCCTGCTTCTATCATCTCTGACTTACATCAATGGCAGCTCAAATTGCTCCGCCAGCCGGACCATTTCTACCTGAATGAGCTCCAGAACAGGATACTCGAATCAAGAACCGTAGTTAAAGACCTTATCAATGCAGAAGATGTGGATGAAGTCTCCATTGTAGACAATGTCTCCACTGCTGTAGCCATAGTCCTGCAGCAGACGGCATGGGCCTTTGCTGAAAGGAAATTCAACCAAGGGGATGCTCTCATTATGTTTCACTGTGCTTATGGAGCGGTGAAGAACTCAATCAAGGCCTACTTTCTGCGTGCTGGTGGGTACGTTATCGAAGTTCCATTTAAATTTCCGCTGAATTCCAATGAAGAAATCATAAGTGAATTTAGGAAAGCATTGGAGAGAGAAAAGGGTAATGGTAGGAGAGTGAGATTAGCTGTGATTGATCATGTCACATGCATGCCAAGTGTTATAATGCCAGTTAAGCATTTGGTCAAAATTTGTAGGGAAGAAGGTGTCGAACAAGTTTTAATAGATGCAGCTCATGGTGTTGGGTGCATAGATGTTGATATGCAAGAAATTGGGGCAGATTTTTATACTAGCAATTTGTATAAGTGGTTCTTTTGCCCACCTGCAGTTGCATTTCTGTATTGTAGGAAGTCAGTGACAAATTCAGATTTGCAATTGCATCACCCTGTGGTGTCTCATGAGTATGGCAATGGGTTGGCTAAAGAAACTGGTTGGGTTGGGACAAGGGATTACAGTCCTTATCTGGTGCTTCCTTCAGTTATGGAGTTTGTCAATAGGTTCGAAGGCGGTGTTGAGGGGATCAGAAAAATGAATCATGATGCTGTTGTTGAGATGGGGAAGATGTTGGCAGAAGCTTGGGGAACCAATCTAGGCTGTCCTCCTGATATGTGTGCTAGCATGATCATGGTTGGTTTGCCAGCTTGTTTGGGGATTTCAAGTGATGATGATGCTATAAAGTTATGGGCACGTTTATGCAAGAAATTTGGTGTTGAAGTCAAGATACATTATCAAGCTCCCAAAGATGCCGAGGTTGCGCCGACAACAGGGTATGTTCGAATTTGTCATCAGATTTACAACAAAGTTGATGACTATAACAAGCTCAGAGATGCAATTAATCAACTCGTTCGTGACGGTTTCACTTGCGCTCTTGAGGTATATATATGCTCTGCCTTCATCCACTTTATTGGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

498

Amino Acids

56.05

Weight (kDa)

6.37

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	743, 1492
AarI	CACCTGC	1 cut(s)	910
Acc36I	ACCTGC	1 cut(s)	910
AccBSI	CCGCTC	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	5 cut(s)	28, 328, 551, 623, 1086
AclWI	GGATC	1 cut(s)	1106
AcsI	RAATTY	9 cut(s)	221, 503, 617, 628, 653, 768, 940, 1280, 1356
AcuI	CTGAAG	1 cut(s)	1038
AdeI	CACNNNGTG	1 cut(s)	967
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	2 cut(s)	334, 1343
AgsI	TTSAA	4 cut(s)	101, 508, 1236, 1292
AjnI	CCWGG	2 cut(s)	238, 248
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	5 cut(s)	109, 167, 433, 451, 978
AlwI	GGATC	1 cut(s)	1106
AoxI	GGCC	3 cut(s)	111, 486, 570
ApeKI	GCWGC	5 cut(s)	264, 276, 313, 472, 809
ApoI	RAATTY	9 cut(s)	221, 503, 617, 628, 653, 768, 940, 1280, 1356
AseI	ATTAAT	1 cut(s)	1413
AspLEI	GCGC	2 cut(s)	1336, 1445
AspS9I	GGNCC	3 cut(s)	111, 337, 486
AsuHPI	GGTGA	3 cut(s)	221, 565, 953
AsuII	TTCGAA	2 cut(s)	1080, 1354
AsuNHI	GCTAGC	1 cut(s)	1193
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	1267
BanII	GRGCYC	1 cut(s)	360
BarI	GAAGNNNNNNTAC	2 cut(s)	1284, 1316
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	5 cut(s)	263, 276, 325, 484, 821
BccI	CCATC	1 cut(s)	1126
BceAI	ACGGC	1 cut(s)	495
BciT130I	CCWGG	2 cut(s)	240, 250
BciVI	GTATCC	1 cut(s)	363
BclI	TGATCA	2 cut(s)	715, 1200
BcoDI	GTCTC	5 cut(s)	109, 167, 433, 451, 978
BfaI	CTAG	3 cut(s)	870, 1169, 1194
BfmI	CTRYAG	3 cut(s)	456, 470, 903
BfuAI	ACCTGC	1 cut(s)	910
BfuI	GTATCC	1 cut(s)	363
BisI	GCNGC	6 cut(s)	28, 265, 277, 314, 473, 810
BlsI	GCNGC	6 cut(s)	29, 266, 278, 315, 474, 811
Bme1390I	CCNGG	2 cut(s)	240, 250
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	3 cut(s)	111, 337, 486
BmiI	GGNNCC	1 cut(s)	1162
BmrFI	CCNGG	2 cut(s)	240, 250
BmsI	GCATC	7 cut(s)	508, 796, 967, 1108, 1237, 1312, 1396
BmtI	GCTAGC	1 cut(s)	1197
BpmI	CTGGAG	1 cut(s)	344
Bpu14I	TTCGAA	2 cut(s)	1080, 1354
BpuEI	CTTGAG	2 cut(s)	91, 1469
BsaJI	CCNNGG	2 cut(s)	511, 1326
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 1343
Bse1I	ACTGG	2 cut(s)	749, 1012
Bse3DI	GCAATG	1 cut(s)	994
BseBI	CCWGG	2 cut(s)	240, 250
BseDI	CCNNGG	2 cut(s)	511, 1326
BseGI	GGATG	4 cut(s)	258, 427, 523, 1473
BseLI	CCNNNNNNNGG	2 cut(s)	334, 1343
BseMI	GCAATG	1 cut(s)	994
BseMII	CTCAG	1 cut(s)	1414
BseNI	ACTGG	2 cut(s)	749, 1012
BseSI	GKGCMC	1 cut(s)	1267
BseXI	GCAGC	5 cut(s)	263, 276, 325, 484, 821
BshFI	GGCC	3 cut(s)	113, 488, 572
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	1033
BslI	CCNNNNNNNGG	2 cut(s)	334, 1343
BsmAI	GTCTC	5 cut(s)	109, 167, 433, 451, 978
BsmFI	GGGAC	1 cut(s)	1033
BsnI	GGCC	3 cut(s)	113, 488, 572
Bsp119I	TTCGAA	2 cut(s)	1080, 1354
Bsp1286I	GDGCHC	2 cut(s)	360, 1267
Bsp143I	GATC	3 cut(s)	715, 1098, 1200
BspACI	CCGC	5 cut(s)	28, 328, 551, 623, 1086
BspANI	GGCC	3 cut(s)	113, 488, 572
BspCNI	CTCAG	1 cut(s)	1413
BspHI	TCATGA	2 cut(s)	976, 1114
BspLI	GGNNCC	1 cut(s)	1162
BspMAI	CTGCAG	2 cut(s)	474, 907
BspMI	ACCTGC	1 cut(s)	910
BspOI	GCTAGC	1 cut(s)	1197
BspPI	GGATC	1 cut(s)	1106
BspT104I	TTCGAA	2 cut(s)	1080, 1354
BsrBI	CCGCTC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	994
BsrI	ACTGG	2 cut(s)	749, 1012
BssECI	CCNNGG	2 cut(s)	511, 1326
BssMI	GATC	3 cut(s)	715, 1098, 1200
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	2 cut(s)	240, 250
Bst4CI	ACNGT	4 cut(s)	388, 539, 1034, 1433
Bst6I	CTCTTC	1 cut(s)	190
BstBI	TTCGAA	2 cut(s)	1080, 1354
BstC8I	GCNNGC	5 cut(s)	332, 585, 731, 1195, 1218
BstDEI	CTNAG	1 cut(s)	1400
BstF5I	GGATG	4 cut(s)	258, 427, 523, 1473
BstHHI	GCGC	2 cut(s)	1336, 1445
BstKTI	GATC	3 cut(s)	718, 1101, 1203
BstMAI	GTCTC	5 cut(s)	109, 167, 433, 451, 978
BstMBI	GATC	3 cut(s)	715, 1098, 1200
BstMWI	GCNNNNNNNGC	7 cut(s)	233, 273, 322, 331, 548, 754, 1331
BstNI	CCWGG	2 cut(s)	240, 250
BstNSI	RCATGY	2 cut(s)	729, 733
BstSCI	CCNGG	2 cut(s)	238, 248
BstSFI	CTRYAG	3 cut(s)	456, 470, 903
BstSLI	GKGCMC	1 cut(s)	1267
BstV1I	GCAGC	5 cut(s)	263, 276, 325, 484, 821
BstXI	CCANNNNNNTGG	2 cut(s)	239, 1484
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	113, 488, 572
BtsCI	GGATG	4 cut(s)	258, 427, 523, 1473
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	3 cut(s)	450, 535, 939
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	5 cut(s)	332, 585, 731, 1195, 1218
CciI	TCATGA	2 cut(s)	976, 1114
CfoI	GCGC	2 cut(s)	1336, 1445
Cfr13I	GGNCC	3 cut(s)	111, 337, 486
Csp6I	GTAC	1 cut(s)	595
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	1 cut(s)	1400
DpnI	GATC	3 cut(s)	717, 1100, 1202
DpnII	GATC	3 cut(s)	715, 1098, 1200
DraI	TTTAAA	1 cut(s)	616
DraIII	CACNNNGTG	1 cut(s)	967
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	317
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	511
Eco147I	AGGCCT	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	1038
EcoICRI	GAGCTC	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	628
EcoRII	CCWGG	2 cut(s)	238, 248
EcoT14I	CCWWGG	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	731
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	511
FalI	AAGNNNNNCTT	4 cut(s)	560, 592, 875, 907
FaqI	GGGAC	1 cut(s)	1033
FbaI	TGATCA	2 cut(s)	715, 1200
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	6 cut(s)	28, 265, 277, 314, 473, 810
FokI	GGATG	4 cut(s)	265, 434, 530, 1460
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	6 cut(s)	28, 265, 277, 314, 473, 810
FspBI	CTAG	3 cut(s)	870, 1169, 1194
GlaI	GCGC	2 cut(s)	1335, 1444
GluI	GCNGC	6 cut(s)	28, 265, 277, 314, 473, 810
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	3 cut(s)	113, 488, 572
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	2 cut(s)	1336, 1445
Hin6I	GCGC	2 cut(s)	1334, 1443
HinP1I	GCGC	2 cut(s)	1334, 1443
HindIII	AAGCTT	2 cut(s)	89, 1152
HinfI	GANTC	3 cut(s)	203, 377, 1111
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	3 cut(s)	221, 565, 953
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	7 cut(s)	208, 220, 298, 946, 1103, 1368, 1403
Hpy188III	TCNNGA	8 cut(s)	361, 381, 977, 1115, 1181, 1297, 1427, 1448
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	7 cut(s)	65, 79, 202, 776, 1062, 1076, 1480
HpyCH4III	ACNGT	4 cut(s)	388, 539, 1034, 1433
HpyCH4IV	ACGT	2 cut(s)	597, 1267
HpyF10VI	GCNNNNNNNGC	7 cut(s)	233, 273, 322, 331, 548, 754, 1331
HpyF3I	CTNAG	1 cut(s)	1400
HpySE526I	ACGT	2 cut(s)	597, 1267
HspAI	GCGC	2 cut(s)	1334, 1443
Ksp22I	TGATCA	2 cut(s)	715, 1200
Kzo9I	GATC	3 cut(s)	715, 1098, 1200
LmnI	GCTCC	5 cut(s)	241, 330, 363, 548, 1318
Lsp1109I	GCAGC	5 cut(s)	263, 276, 325, 484, 821
LweI	GCATC	7 cut(s)	508, 796, 967, 1108, 1237, 1312, 1396
MaeI	CTAG	3 cut(s)	870, 1169, 1194
MaeII	ACGT	2 cut(s)	597, 1267
MaeIII	GTNAC	3 cut(s)	721, 934, 1427
MalI	GATC	3 cut(s)	717, 1100, 1202
MbiI	CCGCTC	1 cut(s)	551
MboI	GATC	3 cut(s)	715, 1098, 1200
MboII	GAAGA	8 cut(s)	41, 177, 180, 425, 568, 650, 791, 1150
MfeI	CAATTG	1 cut(s)	953
MhlI	GDGCHC	2 cut(s)	360, 1267
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	7 cut(s)	89, 124, 146, 1087, 1188, 1321, 1444
Mph1103I	ATGCAT	1 cut(s)	731
MseI	TTAA	5 cut(s)	393, 615, 753, 800, 1413
MslI	CAYNNNNRTG	4 cut(s)	728, 981, 1202, 1270
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	240, 250
MunI	CAATTG	1 cut(s)	953
MvaI	CCWGG	2 cut(s)	240, 250
MwoI	GCNNNNNNNGC	7 cut(s)	233, 273, 322, 331, 548, 754, 1331
NdeII	GATC	3 cut(s)	715, 1098, 1200
NheI	GCTAGC	1 cut(s)	1193
NlaIV	GGNNCC	1 cut(s)	1162
NmeAIII	GCCGAG	1 cut(s)	1351
NmuCI	GTSAC	3 cut(s)	721, 934, 1427
NsiI	ATGCAT	1 cut(s)	731
NspI	RCATGY	2 cut(s)	729, 733
NspV	TTCGAA	2 cut(s)	1080, 1354
PaeI	GCATGC	1 cut(s)	733
PagI	TCATGA	2 cut(s)	976, 1114
PaqCI	CACCTGC	1 cut(s)	910
PceI	AGGCCT	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	377, 1111
PflFI	GACNNNGTC	1 cut(s)	443
PkrI	GCNGC	6 cut(s)	29, 266, 278, 315, 474, 811
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PshBI	ATTAAT	1 cut(s)	1413
PsiI	TTATAA	2 cut(s)	743, 1492
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	238, 248
PspGI	CCWGG	2 cut(s)	238, 248
PspN4I	GGNNCC	1 cut(s)	1162
PspPI	GGNCC	3 cut(s)	111, 337, 486
PsrI	GAACNNNNNNTAC	2 cut(s)	872, 904
PstI	CTGCAG	2 cut(s)	474, 907
PsyI	GACNNNGTC	1 cut(s)	443
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	4 cut(s)	728, 981, 1202, 1270
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	5 cut(s)	393, 615, 753, 800, 1413
SatI	GCNGC	6 cut(s)	28, 265, 277, 314, 473, 810
Sau3AI	GATC	3 cut(s)	715, 1098, 1200
Sau96I	GGNCC	3 cut(s)	111, 337, 486
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	240, 250
SduI	GDGCHC	2 cut(s)	360, 1267
SfaNI	GCATC	7 cut(s)	508, 796, 967, 1108, 1237, 1312, 1396
SfcI	CTRYAG	3 cut(s)	456, 470, 903
SfuI	TTCGAA	2 cut(s)	1080, 1354
SinI	GGWCC	1 cut(s)	337
SmiI	ATTTAAAT	1 cut(s)	616
SmiMI	CAYNNNNRTG	4 cut(s)	728, 981, 1202, 1270
SmlI	CTYRAG	2 cut(s)	106, 1448
SmoI	CTYRAG	2 cut(s)	106, 1448
SphI	GCATGC	1 cut(s)	733
SseBI	AGGCCT	1 cut(s)	572
SsiI	CCGC	5 cut(s)	28, 328, 551, 623, 1086
SspMI	CTAG	3 cut(s)	870, 1169, 1194
SstI	GAGCTC	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	238, 248
StyI	CCWWGG	1 cut(s)	511
SwaI	ATTTAAAT	1 cut(s)	616
TaaI	ACNGT	4 cut(s)	388, 539, 1034, 1433
TaiI	ACGT	2 cut(s)	600, 1270
TaqI	TCGA	5 cut(s)	375, 603, 789, 1080, 1354
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	377, 1111
Tru1I	TTAA	5 cut(s)	393, 615, 753, 800, 1413
Tru9I	TTAA	5 cut(s)	393, 615, 753, 800, 1413
TscAI	CASTG	3 cut(s)	457, 542, 939
TseFI	GTSAC	3 cut(s)	721, 934, 1427
TseI	GCWGC	5 cut(s)	264, 276, 313, 472, 809
Tsp45I	GTSAC	3 cut(s)	721, 934, 1427
TspDTI	ATGAA	8 cut(s)	84, 162, 184, 269, 438, 651, 1124, 1462
TspRI	CASTG	3 cut(s)	457, 542, 939
Tth111I	GACNNNGTC	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	337
VspI	ATTAAT	1 cut(s)	1413
XapI	RAATTY	9 cut(s)	221, 503, 617, 628, 653, 768, 940, 1280, 1356
XceI	RCATGY	2 cut(s)	729, 733
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	3 cut(s)	870, 1169, 1194
Zsp2I	ATGCAT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.